File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/3ce7360f86aebe30b57c724cab4521/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 08:50:58
                             Started mapping on |	Jun 08 08:57:43
                                    Finished on |	Jun 08 09:19:13
       Mapping speed, Million of reads per hour |	208.14

                          Number of input reads |	74584505
                      Average input read length |	233
                                    UNIQUE READS:
                   Uniquely mapped reads number |	70902230
                        Uniquely mapped reads % |	95.06%
                          Average mapped length |	231.86
                       Number of splices: Total |	65036230
            Number of splices: Annotated (sjdb) |	64010307
                       Number of splices: GT/AG |	64233346
                       Number of splices: GC/AG |	399008
                       Number of splices: AT/AC |	36127
               Number of splices: Non-canonical |	367749
                      Mismatch rate per base, % |	0.34%
                         Deletion rate per base |	0.03%
                        Deletion average length |	2.05
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.61
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	2485132
             % of reads mapped to multiple loci |	3.33%
        Number of reads mapped to too many loci |	279843
             % of reads mapped to too many loci |	0.38%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	802106
                 % of reads unmapped: too short |	1.08%
                Number of reads unmapped: other |	115194
                     % of reads unmapped: other |	0.15%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%