Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/a05e11941d61bc5bf455a425521907/tih_rna_sample_00586_B23MVV7LT4_1_1.fastp.fastq.gz
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/ensembl/Homo_sapiens.GRCh38.102.gtf
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/39/01d77bb445449e6d654716ff9d4f1f/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/0a594ab6c0ca65a871c6e125dd857a/kallisto
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/39/01d77bb445449e6d654716ff9d4f1f/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/a05e11941d61bc5bf455a425521907/tih_rna_sample_00586_B23MVV7LT4_1_2.fastp.fastq.gz
==> STAGING COMPLETE (6 inputs)
[quant] fragment length distribution will be estimated from the data
[index] k-mer length: 31
[index] number of targets: 194,360
[index] number of k-mers: 112,035,259
[quant] running in paired-end mode
[quant] will process pair 1: tih_rna_sample_00586_B23MVV7LT4_1_1.fastp.fastq.gz
tih_rna_sample_00586_B23MVV7LT4_1_2.fastp.fastq.gz
[quant] finding pseudoalignments for the reads ...
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[quant] processed 182,496,019 reads, 178,516,375 reads pseudoaligned
[quant] estimated average fragment length: 166.5
[ em] quantifying the abundances ... done
[ em] the Expectation-Maximization algorithm ran for 1,666 rounds