File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/72376a10c7c31d4cbae033125cd11c/.command.log
Size
1.1 KB
Task
NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (tih_rna_sample_00574_B23MVV7LT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/ee04f79784cc04aa61f81e5b8fb538/tih_rna_sample_00574_B23MVV7LT4_1.sample_qc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/72376a10c7c31d4cbae033125cd11c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/8220ed6ed9557780c5c1a101f4965c/tih_rna_sample_00574_B23MVV7LT4_1
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/72376a10c7c31d4cbae033125cd11c/.command.run
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: tih_rna_sample_00574_B23MVV7LT4_1/abundance.h5
Successfully converted tih_rna_sample_00574_B23MVV7LT4_1/abundance.h5 to tih_rna_sample_00574_B23MVV7LT4_1_kallisto_mqc.tsv
  Sample: tih_rna_sample_00574_B23MVV7LT4_1
  Mean Fragment Length: 148.1 bp
  Median Fragment Length: 135.0 bp
  pct_mito_est_counts: 0.017%
  pct_ribo_est_counts: 0.691%
  pct_hk_est_counts: 0.338%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.041%
  pct_ribo_tpm: 2.27%
  pct_hk_tpm: 0.532%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 0.001%