Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/da3b58fe5c69f4c766ac934e8571dc/FFPE_V4_0002_RNA_0001_B23MVV7LT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/432e31b2e62ce7f25e683e04e0e215/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/432e31b2e62ce7f25e683e04e0e215/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory