File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/f63a13c0013a300576a2a862b63910/.command.log
Size
14.2 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (tih_rna_sample_00574_B23MVV7LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/9790922142f9fcfaf19cb9beb28122/tih_rna_sample_00574_B23MVV7LT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/e29a6a5d3a63c66aaa4556663d225d/tih_rna_sample_00574_B23MVV7LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-7324c8a8-f474-426a-a5c9-715912777f94/c4/140ab148cdcf1ed9bdffe91f534e47/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/f63a13c0013a300576a2a862b63910/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/f63a13c0013a300576a2a862b63910/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
ESR1--UBR5-AS1
starfusion
arriba
MARK2--CD44
starfusion
ZNF236--ALG1L2
starfusion
arriba
NACA--PRIM1
starfusion
FSIP1--AC013652.1
starfusion
arriba
PDS5B--FRY
starfusion
STX16--NPEPL1
starfusion
arriba
TLK2P1--AC110079.1
starfusion
ATP10A--ANKS1B
starfusion
arriba
MFSD6--TLK1
starfusion
TLK2--AC240565.1
starfusion
GNA13--BPTF
starfusion
NFE2L2--PDE11A
starfusion
GLI3--AC034187.1
starfusion
DDTL--CCDC117
starfusion
arriba
DDT--CCDC117
starfusion
RNA5SP150--MIGA1
starfusion
RHPN2--RGS9
starfusion
TAX1BP1--AC007130.1
starfusion
NFE2L2--CYCTP
starfusion
MIR4713HG--GLDN
starfusion
arriba
AC091132.4--AC091132.1
starfusion
TBK1--SRGAP1
starfusion
ERBB4--ERBB4
arriba
FGFR3--LETM1
arriba
RBM14--RBM4
arriba
ESR1--RRM2B
arriba
PCDHGA5--PCDHGA8
arriba
PCDHGA5--PCDHGA11
arriba
PCDHGA5--PCDHGC5
arriba
PCDHGA5--PCDHGA10
arriba
PCDHGA5--PCDHGC4
arriba
PCDHGA5--PCDHGB6
arriba
PCDHGA5--PCDHGA9
arriba
PCDHGA5--PCDHGB7
arriba
PCDHGA5--PCDHGA12
arriba
PCDHGA5--PCDHGC3
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGC3
arriba
TVP23C--CDRT4
arriba
GREB1--E2F6
arriba
FRY--UACA
arriba
CRK--NTRK3
arriba
AGO3--AGO1
arriba
TAF4--CDH4
arriba
KLRC4--KLRK1
arriba
DDHD2--ADAM2
arriba
LMBR1--ESYT2
arriba
LMBR1--DYNC2I1
arriba
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHA13
arriba
PCDHA3--PCDHAC2
arriba
PCDHA3--PCDHAC1
arriba
PCDHA6--PCDHAC2
arriba
PCDHA6--PCDHAC1
arriba
PCDHA3--PCDHA13
arriba
PCDHA6--PCDHA13
arriba
ZDHHC17--PLD1
arriba
TLK2--BET1L
arriba

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Processing ESR1--UBR5-AS1:   0%|          | 0/68 [00:00<?, ?it/s]
Processing ESR1--UBR5-AS1:   1%|▏         | 1/68 [00:00<00:07,  9.24it/s]
Processing MARK2--CD44:   1%|▏         | 1/68 [00:00<00:07,  9.24it/s]   
Processing MARK2--CD44:   3%|▎         | 2/68 [00:00<00:06,  9.47it/s]
Processing ZNF236--ALG1L2:   3%|▎         | 2/68 [00:00<00:06,  9.47it/s]
Processing ZNF236--ALG1L2:   4%|▍         | 3/68 [00:00<00:06,  9.55it/s]
Processing NACA--PRIM1:   4%|▍         | 3/68 [00:00<00:06,  9.55it/s]   
Processing NACA--PRIM1:   6%|▌         | 4/68 [00:00<00:06,  9.59it/s]
Processing FSIP1--AC013652.1:   6%|▌         | 4/68 [00:00<00:06,  9.59it/s]
Processing FSIP1--AC013652.1:   7%|▋         | 5/68 [00:00<00:06,  9.61it/s]
Processing PDS5B--FRY:   7%|▋         | 5/68 [00:00<00:06,  9.61it/s]       
Processing PDS5B--FRY:   9%|▉         | 6/68 [00:00<00:06,  9.62it/s]
Processing STX16--NPEPL1:   9%|▉         | 6/68 [00:00<00:06,  9.62it/s]
Processing STX16--NPEPL1:  10%|█         | 7/68 [00:00<00:06,  9.63it/s]
Processing TLK2P1--AC110079.1:  10%|█         | 7/68 [00:00<00:06,  9.63it/s]
Processing TLK2P1--AC110079.1:  12%|█▏        | 8/68 [00:00<00:06,  9.63it/s]
Processing ATP10A--ANKS1B:  12%|█▏        | 8/68 [00:00<00:06,  9.63it/s]    
Processing ATP10A--ANKS1B:  13%|█▎        | 9/68 [00:00<00:06,  9.63it/s]
Processing MFSD6--TLK1:  13%|█▎        | 9/68 [00:00<00:06,  9.63it/s]   
Processing MFSD6--TLK1:  15%|█▍        | 10/68 [00:01<00:06,  9.64it/s]
Processing TLK2--AC240565.1:  15%|█▍        | 10/68 [00:01<00:06,  9.64it/s]
Processing TLK2--AC240565.1:  16%|█▌        | 11/68 [00:01<00:05,  9.64it/s]
Processing GNA13--BPTF:  16%|█▌        | 11/68 [00:01<00:05,  9.64it/s]     
Processing GNA13--BPTF:  18%|█▊        | 12/68 [00:01<00:05,  9.64it/s]
Processing NFE2L2--PDE11A:  18%|█▊        | 12/68 [00:01<00:05,  9.64it/s]
Processing NFE2L2--PDE11A:  19%|█▉        | 13/68 [00:01<00:05,  9.64it/s]
Processing GLI3--AC034187.1:  19%|█▉        | 13/68 [00:01<00:05,  9.64it/s]
Processing GLI3--AC034187.1:  21%|██        | 14/68 [00:01<00:05,  9.64it/s]
Processing DDTL--CCDC117:  21%|██        | 14/68 [00:01<00:05,  9.64it/s]   
Processing DDTL--CCDC117:  22%|██▏       | 15/68 [00:01<00:05,  9.64it/s]
Processing DDT--CCDC117:  22%|██▏       | 15/68 [00:01<00:05,  9.64it/s] 
Processing DDT--CCDC117:  24%|██▎       | 16/68 [00:01<00:05,  9.64it/s]
Processing RNA5SP150--MIGA1:  24%|██▎       | 16/68 [00:01<00:05,  9.64it/s]
Processing RNA5SP150--MIGA1:  25%|██▌       | 17/68 [00:01<00:05,  9.64it/s]
Processing RHPN2--RGS9:  25%|██▌       | 17/68 [00:01<00:05,  9.64it/s]     
Processing RHPN2--RGS9:  26%|██▋       | 18/68 [00:01<00:05,  9.64it/s]
Processing TAX1BP1--AC007130.1:  26%|██▋       | 18/68 [00:01<00:05,  9.64it/s]
Processing TAX1BP1--AC007130.1:  28%|██▊       | 19/68 [00:01<00:05,  9.64it/s]
Processing NFE2L2--CYCTP:  28%|██▊       | 19/68 [00:01<00:05,  9.64it/s]      
Processing NFE2L2--CYCTP:  29%|██▉       | 20/68 [00:02<00:04,  9.63it/s]
Processing MIR4713HG--GLDN:  29%|██▉       | 20/68 [00:02<00:04,  9.63it/s]
Processing MIR4713HG--GLDN:  31%|███       | 21/68 [00:02<00:04,  9.63it/s]
Processing AC091132.4--AC091132.1:  31%|███       | 21/68 [00:02<00:04,  9.63it/s]
Processing AC091132.4--AC091132.1:  32%|███▏      | 22/68 [00:02<00:04,  9.64it/s]
Processing TBK1--SRGAP1:  32%|███▏      | 22/68 [00:02<00:04,  9.64it/s]          
Processing TBK1--SRGAP1:  34%|███▍      | 23/68 [00:02<00:04,  9.64it/s]
Processing ERBB4--ERBB4:  34%|███▍      | 23/68 [00:02<00:04,  9.64it/s]
Processing ERBB4--ERBB4:  35%|███▌      | 24/68 [00:02<00:04,  9.64it/s]
Processing FGFR3--LETM1:  35%|███▌      | 24/68 [00:02<00:04,  9.64it/s]
Processing FGFR3--LETM1:  37%|███▋      | 25/68 [00:02<00:04,  9.64it/s]
Processing RBM14--RBM4:  37%|███▋      | 25/68 [00:02<00:04,  9.64it/s] 
Processing RBM14--RBM4:  38%|███▊      | 26/68 [00:02<00:04,  9.64it/s]
Processing ESR1--RRM2B:  38%|███▊      | 26/68 [00:02<00:04,  9.64it/s]
Processing ESR1--RRM2B:  40%|███▉      | 27/68 [00:02<00:04,  9.64it/s]
Processing PCDHGA5--PCDHGA8:  40%|███▉      | 27/68 [00:02<00:04,  9.64it/s]
Processing PCDHGA5--PCDHGA8:  41%|████      | 28/68 [00:02<00:04,  9.64it/s]
Processing PCDHGA5--PCDHGA11:  41%|████      | 28/68 [00:02<00:04,  9.64it/s]
Processing PCDHGA5--PCDHGA11:  43%|████▎     | 29/68 [00:03<00:04,  9.64it/s]
Processing PCDHGA5--PCDHGC5:  43%|████▎     | 29/68 [00:03<00:04,  9.64it/s] 
Processing PCDHGA5--PCDHGC5:  44%|████▍     | 30/68 [00:03<00:03,  9.64it/s]
Processing PCDHGA5--PCDHGA10:  44%|████▍     | 30/68 [00:03<00:03,  9.64it/s]
Processing PCDHGA5--PCDHGA10:  46%|████▌     | 31/68 [00:03<00:03,  9.64it/s]
Processing PCDHGA5--PCDHGC4:  46%|████▌     | 31/68 [00:03<00:03,  9.64it/s] 
Processing PCDHGA5--PCDHGC4:  47%|████▋     | 32/68 [00:03<00:03,  9.64it/s]
Processing PCDHGA5--PCDHGB6:  47%|████▋     | 32/68 [00:03<00:03,  9.64it/s]
Processing PCDHGA5--PCDHGB6:  49%|████▊     | 33/68 [00:03<00:03,  9.64it/s]
Processing PCDHGA5--PCDHGA9:  49%|████▊     | 33/68 [00:03<00:03,  9.64it/s]
Processing PCDHGA5--PCDHGA9:  50%|█████     | 34/68 [00:03<00:03,  9.64it/s]
Processing PCDHGA5--PCDHGB7:  50%|█████     | 34/68 [00:03<00:03,  9.64it/s]
Processing PCDHGA5--PCDHGB7:  51%|█████▏    | 35/68 [00:03<00:03,  9.64it/s]
Processing PCDHGA5--PCDHGA12:  51%|█████▏    | 35/68 [00:03<00:03,  9.64it/s]
Processing PCDHGA5--PCDHGA12:  53%|█████▎    | 36/68 [00:03<00:03,  9.64it/s]
Processing PCDHGA5--PCDHGC3:  53%|█████▎    | 36/68 [00:03<00:03,  9.64it/s] 
Processing PCDHGA5--PCDHGC3:  54%|█████▍    | 37/68 [00:03<00:03,  9.64it/s]
Processing PCDHGB2--PCDHGA8:  54%|█████▍    | 37/68 [00:03<00:03,  9.64it/s]
Processing PCDHGB2--PCDHGA8:  56%|█████▌    | 38/68 [00:03<00:03,  9.64it/s]
Processing PCDHGB2--PCDHGA11:  56%|█████▌    | 38/68 [00:03<00:03,  9.64it/s]
Processing PCDHGB2--PCDHGA11:  57%|█████▋    | 39/68 [00:04<00:03,  9.64it/s]
Processing PCDHGB2--PCDHGC5:  57%|█████▋    | 39/68 [00:04<00:03,  9.64it/s] 
Processing PCDHGB2--PCDHGC5:  59%|█████▉    | 40/68 [00:04<00:02,  9.64it/s]
Processing PCDHGB2--PCDHGA10:  59%|█████▉    | 40/68 [00:04<00:02,  9.64it/s]
Processing PCDHGB2--PCDHGA10:  60%|██████    | 41/68 [00:04<00:02,  9.64it/s]
Processing PCDHGB2--PCDHGC4:  60%|██████    | 41/68 [00:04<00:02,  9.64it/s] 
Processing PCDHGB2--PCDHGC4:  62%|██████▏   | 42/68 [00:04<00:02,  9.62it/s]
Processing PCDHGB2--PCDHGB6:  62%|██████▏   | 42/68 [00:04<00:02,  9.62it/s]
Processing PCDHGB2--PCDHGB6:  63%|██████▎   | 43/68 [00:04<00:02,  9.62it/s]
Processing PCDHGB2--PCDHGA9:  63%|██████▎   | 43/68 [00:04<00:02,  9.62it/s]
Processing PCDHGB2--PCDHGA9:  65%|██████▍   | 44/68 [00:04<00:02,  9.63it/s]
Processing PCDHGB2--PCDHGB7:  65%|██████▍   | 44/68 [00:04<00:02,  9.63it/s]
Processing PCDHGB2--PCDHGB7:  66%|██████▌   | 45/68 [00:04<00:02,  9.63it/s]
Processing PCDHGB2--PCDHGA12:  66%|██████▌   | 45/68 [00:04<00:02,  9.63it/s]
Processing PCDHGB2--PCDHGA12:  68%|██████▊   | 46/68 [00:04<00:02,  9.64it/s]
Processing PCDHGB2--PCDHGC3:  68%|██████▊   | 46/68 [00:04<00:02,  9.64it/s] 
Processing PCDHGB2--PCDHGC3:  69%|██████▉   | 47/68 [00:04<00:02,  9.64it/s]
Processing TVP23C--CDRT4:  69%|██████▉   | 47/68 [00:04<00:02,  9.64it/s]   
Processing TVP23C--CDRT4:  71%|███████   | 48/68 [00:04<00:02,  9.63it/s]
Processing GREB1--E2F6:  71%|███████   | 48/68 [00:04<00:02,  9.63it/s]  
Processing GREB1--E2F6:  72%|███████▏  | 49/68 [00:05<00:01,  9.63it/s]
Processing FRY--UACA:  72%|███████▏  | 49/68 [00:05<00:01,  9.63it/s]  
Processing FRY--UACA:  74%|███████▎  | 50/68 [00:05<00:01,  9.63it/s]
Processing CRK--NTRK3:  74%|███████▎  | 50/68 [00:05<00:01,  9.63it/s]
Processing CRK--NTRK3:  75%|███████▌  | 51/68 [00:05<00:01,  9.63it/s]
Processing AGO3--AGO1:  75%|███████▌  | 51/68 [00:05<00:01,  9.63it/s]
Processing AGO3--AGO1:  76%|███████▋  | 52/68 [00:05<00:01,  9.64it/s]
Processing TAF4--CDH4:  76%|███████▋  | 52/68 [00:05<00:01,  9.64it/s]
Processing TAF4--CDH4:  78%|███████▊  | 53/68 [00:05<00:01,  9.64it/s]
Processing KLRC4--KLRK1:  78%|███████▊  | 53/68 [00:05<00:01,  9.64it/s]
Processing KLRC4--KLRK1:  79%|███████▉  | 54/68 [00:05<00:01,  9.64it/s]
Processing DDHD2--ADAM2:  79%|███████▉  | 54/68 [00:05<00:01,  9.64it/s]
Processing DDHD2--ADAM2:  81%|████████  | 55/68 [00:05<00:01,  9.64it/s]
Processing LMBR1--ESYT2:  81%|████████  | 55/68 [00:05<00:01,  9.64it/s]
Processing LMBR1--ESYT2:  82%|████████▏ | 56/68 [00:05<00:01,  9.64it/s]
Processing LMBR1--DYNC2I1:  82%|████████▏ | 56/68 [00:05<00:01,  9.64it/s]
Processing LMBR1--DYNC2I1:  84%|████████▍ | 57/68 [00:05<00:01,  9.64it/s]
Processing PCDHA4--PCDHAC2:  84%|████████▍ | 57/68 [00:05<00:01,  9.64it/s]
Processing PCDHA4--PCDHAC2:  85%|████████▌ | 58/68 [00:06<00:01,  9.64it/s]
Processing PCDHA4--PCDHAC1:  85%|████████▌ | 58/68 [00:06<00:01,  9.64it/s]
Processing PCDHA4--PCDHAC1:  87%|████████▋ | 59/68 [00:06<00:00,  9.64it/s]
Processing PCDHA4--PCDHA13:  87%|████████▋ | 59/68 [00:06<00:00,  9.64it/s]
Processing PCDHA4--PCDHA13:  88%|████████▊ | 60/68 [00:06<00:00,  9.63it/s]
Processing PCDHA3--PCDHAC2:  88%|████████▊ | 60/68 [00:06<00:00,  9.63it/s]
Processing PCDHA3--PCDHAC2:  90%|████████▉ | 61/68 [00:06<00:00,  9.63it/s]
Processing PCDHA3--PCDHAC1:  90%|████████▉ | 61/68 [00:06<00:00,  9.63it/s]
Processing PCDHA3--PCDHAC1:  91%|█████████ | 62/68 [00:06<00:00,  9.64it/s]
Processing PCDHA6--PCDHAC2:  91%|█████████ | 62/68 [00:06<00:00,  9.64it/s]
Processing PCDHA6--PCDHAC2:  93%|█████████▎| 63/68 [00:06<00:00,  9.63it/s]
Processing PCDHA6--PCDHAC1:  93%|█████████▎| 63/68 [00:06<00:00,  9.63it/s]
Processing PCDHA6--PCDHAC1:  94%|█████████▍| 64/68 [00:06<00:00,  9.63it/s]
Processing PCDHA3--PCDHA13:  94%|█████████▍| 64/68 [00:06<00:00,  9.63it/s]
Processing PCDHA3--PCDHA13:  96%|█████████▌| 65/68 [00:06<00:00,  9.63it/s]
Processing PCDHA6--PCDHA13:  96%|█████████▌| 65/68 [00:06<00:00,  9.63it/s]
Processing PCDHA6--PCDHA13:  97%|█████████▋| 66/68 [00:06<00:00,  9.63it/s]
Processing ZDHHC17--PLD1:  97%|█████████▋| 66/68 [00:06<00:00,  9.63it/s]  
Processing ZDHHC17--PLD1:  99%|█████████▊| 67/68 [00:06<00:00,  9.62it/s]
Processing TLK2--BET1L:  99%|█████████▊| 67/68 [00:06<00:00,  9.62it/s]  
Processing TLK2--BET1L: 100%|██████████| 68/68 [00:07<00:00,  9.62it/s]
Processing TLK2--BET1L: 100%|██████████| 68/68 [00:07<00:00,  9.63it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory