Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/cfaba1e10aeca995c0191cc19c4e39/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/f65016ba237998926cb8c2773f2ba9/tih_rna_sample_00574_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/cfaba1e10aeca995c0191cc19c4e39/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 293160693
unpaired = 5817588
MERGED PAIRED END READS = 293160693
MATES PROCESSED = 592138974
TOTAL READS     = 298978281
DISTINCT READS  = 1.50005e+08
DISTINCT COUNTS = 1304
MAX COUNT       = 1275060
COUNTS OF 1     = 8.8381e+07
MAX TERMS       = 100
OBSERVED COUNTS (1275061)
1	88380982
2	33219355
3	13684063
4	6215462
5	3106248
6	1700081
7	1004785
8	635893
9	425843
10	298698
11	218210
12	165075
13	128249
14	102163
15	82502
16	68153
17	56609
18	47936
19	40934
20	35385
21	30799
22	26716
23	23501
24	20963
25	18983
26	16912
27	15251
28	13640
29	12528
30	11536
31	10248
32	9391
33	8664
34	8224
35	7501
36	6913
37	6535
38	5938
39	5601
40	5194
41	4950
42	4636
43	4296
44	4013
45	3763
46	3645
47	3423
48	3048
49	2906
50	2873
51	2722
52	2597
53	2365
54	2269
55	2195
56	2116
57	2015
58	2010
59	1831
60	1749
61	1698
62	1643
63	1523
64	1429
65	1440
66	1395
67	1307
68	1239
69	1254
70	1142
71	1144
72	1177
73	1064
74	1020
75	987
76	969
77	891
78	952
79	813
80	793
81	794
82	803
83	759
84	704
85	752
86	694
87	710
88	657
89	637
90	584
91	528
92	582
93	572
94	559
95	499
96	504
97	479
98	463
99	468
100	464
101	462
102	463
103	396
104	396
105	429
106	389
107	400
108	409
109	404
110	356
111	387
112	303
113	347
114	297
115	326
116	334
117	318
118	327
119	286
120	263
121	252
122	262
123	259
124	269
125	232
126	274
127	251
128	246
129	244
130	220
131	237
132	233
133	216
134	218
135	190
136	197
137	208
138	207
139	208
140	203
141	186
142	182
143	165
144	167
145	186
146	168
147	168
148	154
149	172
150	169
151	170
152	149
153	172
154	172
155	158
156	153
157	147
158	141
159	134
160	122
161	121
162	128
163	113
164	130
165	114
166	127
167	108
168	106
169	119
170	109
171	97
172	102
173	95
174	105
175	93
176	110
177	106
178	87
179	108
180	88
181	94
182	101
183	95
184	92
185	91
186	95
187	95
188	81
189	94
190	100
191	80
192	70
193	80
194	82
195	80
196	105
197	73
198	70
199	76
200	75
201	70
202	72
203	75
204	79
205	62
206	69
207	68
208	69
209	67
210	67
211	57
212	71
213	57
214	74
215	60
216	49
217	59
218	57
219	55
220	50
221	61
222	74
223	48
224	51
225	45
226	53
227	55
228	64
229	52
230	53
231	63
232	54
233	44
234	51
235	53
236	54
237	45
238	44
239	35
240	44
241	42
242	51
243	44
244	44
245	44
246	37
247	36
248	41
249	50
250	36
251	40
252	46
253	39
254	41
255	26
256	30
257	31
258	43
259	32
260	21
261	31
262	34
263	35
264	54
265	38
266	36
267	35
268	28
269	32
270	34
271	38
272	32
273	32
274	37
275	27
276	35
277	28
278	35
279	37
280	22
281	32
282	31
283	35
284	36
285	39
286	31
287	22
288	29
289	33
290	31
291	37
292	28
293	17
294	36
295	29
296	28
297	28
298	16
299	24
300	27
301	30
302	21
303	17
304	27
305	24
306	21
307	25
308	19
309	20
310	18
311	27
312	20
313	24
314	19
315	20
316	22
317	22
318	21
319	26
320	25
321	21
322	22
323	21
324	31
325	18
326	17
327	19
328	26
329	24
330	12
331	21
332	9
333	12
334	16
335	20
336	19
337	13
338	18
339	23
340	20
341	14
342	11
343	20
344	19
345	17
346	30
347	15
348	15
349	19
350	17
351	19
352	18
353	18
354	10
355	17
356	14
357	14
358	16
359	17
360	16
361	10
362	15
363	15
364	9
365	18
366	20
367	10
368	13
369	9
370	20
371	11
372	16
373	13
374	10
375	14
376	9
377	16
378	11
379	12
380	17
381	14
382	14
383	10
384	10
385	11
386	16
387	12
388	16
389	13
390	12
391	12
392	16
393	17
394	10
395	17
396	10
397	14
398	5
399	8
400	11
401	8
402	13
403	9
404	11
405	13
406	8
407	9
408	12
409	12
410	12
411	11
412	11
413	10
414	7
415	11
416	8
417	11
418	15
419	9
420	9
421	11
422	9
423	12
424	15
425	6
426	6
427	14
428	3
429	7
430	11
431	8
432	7
433	11
434	7
435	7
436	2
437	8
438	7
439	15
440	10
441	9
442	4
443	11
444	9
445	8
446	9
447	7
448	9
449	9
450	5
451	12
452	6
453	5
454	7
455	3
456	12
457	11
458	9
459	10
460	10
461	7
462	10
463	4
464	11
465	5
466	7
467	8
468	8
469	6
470	9
471	5
472	13
473	11
474	8
475	3
476	7
477	5
478	6
479	9
480	1
481	11
482	2
483	7
484	8
485	13
486	2
487	5
488	2
489	13
490	9
491	5
492	4
493	7
494	6
495	7
496	7
497	8
498	10
499	7
500	8
501	7
502	8
503	7
504	5
505	7
506	11
507	9
508	4
509	4
510	6
511	7
512	4
513	6
514	7
515	6
516	6
517	6
518	5
519	7
520	3
521	6
522	8
523	6
524	4
525	5
526	4
527	7
528	10
529	6
530	3
531	4
532	4
533	3
534	7
535	4
536	5
537	5
538	2
539	6
540	4
541	8
542	3
543	4
544	4
545	3
546	2
547	3
548	4
549	5
550	4
551	2
552	3
553	2
554	2
555	5
556	2
557	4
558	6
559	6
560	3
561	2
562	2
563	4
564	7
565	4
566	3
567	6
568	5
569	3
570	3
571	5
572	2
573	3
574	4
575	3
576	7
577	4
578	7
579	7
580	1
581	3
582	1
583	6
584	4
585	4
586	3
587	1
588	5
589	5
590	4
591	4
592	5
593	8
594	2
595	3
596	3
597	2
598	2
599	7
600	6
601	2
602	2
603	3
604	4
605	2
606	4
607	5
608	7
609	2
610	3
611	2
612	5
613	4
614	5
615	6
616	4
617	2
618	8
619	4
620	3
621	6
622	2
623	3
624	2
625	3
626	1
628	3
629	1
630	4
631	3
632	4
633	1
634	3
635	2
636	1
637	3
638	2
639	1
640	3
641	5
642	2
644	1
645	3
646	4
647	2
648	2
649	3
650	5
651	3
652	5
653	6
654	5
655	3
656	1
657	4
658	1
659	2
660	2
661	5
662	4
663	1
665	5
666	1
667	3
668	1
669	3
670	5
671	3
672	3
673	5
674	1
675	2
676	2
677	1
678	3
679	1
681	4
683	5
684	3
685	3
686	2
688	4
690	2
691	1
692	3
693	2
694	3
695	1
696	4
697	1
699	4
700	1
701	3
702	2
703	4
704	4
705	1
706	3
707	2
708	2
709	2
711	2
712	2
713	2
714	2
715	1
716	2
718	3
719	4
720	7
722	4
723	3
724	4
725	4
726	1
727	3
728	1
729	1
730	4
731	1
732	1
733	4
734	2
735	2
736	2
737	3
738	1
739	1
740	5
741	2
742	3
745	3
747	1
748	2
749	3
750	1
752	2
753	2
754	2
756	2
757	2
758	3
759	1
760	3
762	5
763	2
765	1
766	1
767	1
768	2
770	2
771	2
772	1
774	3
775	1
776	2
777	2
778	1
779	1
780	1
783	1
784	3
785	3
787	3
788	4
789	3
790	2
791	3
792	3
793	3
794	3
795	1
796	1
798	4
799	5
802	1
803	3
804	1
805	3
806	1
808	3
809	1
810	4
811	2
812	2
815	1
816	2
817	2
819	1
820	1
821	1
822	2
824	3
825	1
827	3
828	1
829	2
831	3
832	3
833	1
835	1
836	2
837	1
838	2
839	4
840	1
841	2
842	1
843	2
844	3
846	5
847	1
848	1
849	2
850	3
851	1
852	2
853	2
855	1
856	2
857	2
858	2
859	2
860	3
861	3
862	2
863	1
864	1
865	2
866	1
867	5
868	2
869	3
870	1
871	1
872	2
873	1
874	2
875	1
876	1
878	1
879	3
880	3
881	3
883	1
884	1
885	2
886	1
888	2
889	2
891	2
892	2
893	1
894	2
898	1
900	1
901	1
902	1
903	3
904	1
905	1
908	1
911	1
912	1
913	2
914	3
918	2
919	1
920	2
921	2
924	1
925	3
926	1
927	1
928	1
929	3
930	1
932	2
933	2
934	1
937	1
939	1
940	2
941	1
944	4
946	2
947	1
949	2
961	1
962	1
963	1
964	1
967	1
968	2
969	1
971	4
973	1
975	2
979	3
983	2
984	1
986	1
987	3
989	1
991	1
992	2
993	1
994	1
996	1
997	1
1000	2
1001	2
1002	1
1003	2
1005	3
1006	2
1007	1
1008	1
1009	2
1013	1
1014	1
1016	3
1017	2
1018	1
1019	1
1020	2
1021	1
1023	1
1024	1
1025	1
1027	1
1028	1
1030	3
1031	2
1034	1
1037	2
1039	2
1042	2
1043	1
1044	1
1046	1
1047	1
1049	1
1050	1
1052	1
1053	1
1054	2
1055	1
1056	1
1057	2
1061	1
1062	3
1064	1
1065	1
1067	2
1070	1
1071	1
1072	2
1073	1
1075	1
1076	1
1078	2
1080	1
1081	1
1087	1
1092	1
1095	1
1097	1
1102	1
1103	1
1106	2
1109	1
1111	1
1112	3
1115	1
1116	1
1117	2
1118	1
1120	1
1122	1
1123	1
1125	1
1127	2
1129	1
1131	2
1133	1
1135	1
1136	1
1138	1
1139	3
1141	1
1144	1
1146	1
1147	2
1148	1
1150	1
1152	1
1156	1
1165	1
1166	1
1167	2
1168	2
1169	1
1170	3
1175	1
1178	1
1179	1
1181	2
1182	2
1183	1
1186	1
1187	1
1188	1
1191	1
1194	1
1198	1
1203	1
1207	1
1221	1
1222	1
1223	1
1224	1
1225	1
1228	1
1229	1
1232	1
1235	1
1236	1
1240	1
1243	1
1254	1
1257	1
1259	1
1260	1
1264	1
1268	2
1270	1
1283	1
1285	1
1287	1
1293	1
1299	2
1312	1
1318	1
1320	1
1324	1
1328	1
1329	1
1337	1
1339	1
1343	1
1347	1
1353	1
1355	1
1357	2
1360	1
1368	2
1370	1
1372	1
1375	1
1378	2
1380	1
1381	2
1382	1
1387	2
1390	1
1392	2
1393	2
1397	1
1398	1
1404	1
1405	1
1406	1
1409	1
1413	1
1414	1
1420	2
1422	1
1429	1
1433	1
1436	1
1440	1
1445	1
1451	1
1459	1
1463	2
1466	1
1467	1
1468	1
1470	1
1471	1
1477	1
1480	1
1486	1
1493	1
1501	1
1504	1
1505	1
1506	1
1522	1
1525	1
1533	1
1537	1
1538	1
1540	1
1544	1
1548	1
1552	1
1555	1
1568	1
1576	1
1578	1
1579	1
1581	1
1590	2
1591	1
1604	1
1611	1
1612	1
1620	1
1623	1
1624	1
1625	1
1647	1
1653	1
1670	1
1673	2
1677	1
1685	1
1689	1
1693	2
1708	1
1711	1
1716	1
1721	1
1724	1
1731	1
1732	1
1733	1
1736	1
1738	1
1742	1
1749	2
1758	1
1762	1
1768	1
1772	1
1777	1
1780	1
1789	1
1804	1
1808	1
1816	1
1824	1
1825	1
1827	1
1832	1
1834	1
1835	2
1843	1
1848	1
1854	1
1856	1
1863	1
1866	1
1883	1
1884	1
1888	1
1899	1
1901	1
1912	1
1915	3
1922	1
1930	1
1931	1
1934	2
1941	1
1943	1
1954	1
1974	1
1976	1
1980	3
1997	1
2006	1
2019	1
2044	1
2051	1
2053	1
2056	1
2065	2
2075	1
2077	1
2091	1
2106	1
2109	1
2110	1
2114	1
2131	1
2136	1
2138	1
2142	1
2144	1
2148	1
2154	1
2157	1
2169	1
2170	1
2173	1
2196	1
2206	1
2233	1
2249	1
2254	1
2263	1
2270	1
2272	1
2280	1
2297	1
2298	1
2300	1
2303	1
2313	1
2318	1
2331	1
2347	1
2349	1
2359	1
2375	1
2396	1
2397	1
2403	1
2422	1
2426	1
2427	1
2431	1
2451	1
2454	2
2465	1
2502	1
2516	1
2551	1
2557	1
2574	1
2612	1
2623	1
2648	1
2688	2
2709	1
2718	1
2719	1
2741	1
2744	1
2752	1
2768	1
2771	1
2832	1
2851	1
2917	1
2957	1
2994	1
3010	1
3014	1
3060	1
3078	1
3084	2
3103	1
3107	1
3119	1
3142	1
3183	1
3240	1
3260	1
3308	1
3317	1
3461	1
3482	1
3614	1
3626	1
3671	1
3679	1
3730	1
3756	1
3912	1
4023	1
4134	1
4186	1
4323	1
4416	1
4429	1
4451	1
4699	1
4930	1
5106	1
5364	1
5453	1
6290	1
7421	1
7693	1
7869	1
9756	1
12732	1
15055	1
32190	1
1275060	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
_.._.._...___..._.._.......___...._...._._...__.._......._...___.._._...
__..._.__..__............._....__...._.........._........._.._...
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]