File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/b341be4cdee4213f034c8f6707344a/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 09:18:09
                             Started mapping on |	Jun 08 09:24:26
                                    Finished on |	Jun 08 09:59:55
       Mapping speed, Million of reads per hour |	320.14

                          Number of input reads |	189328080
                      Average input read length |	246
                                    UNIQUE READS:
                   Uniquely mapped reads number |	181530599
                        Uniquely mapped reads % |	95.88%
                          Average mapped length |	246.05
                       Number of splices: Total |	184071916
            Number of splices: Annotated (sjdb) |	181463719
                       Number of splices: GT/AG |	181660624
                       Number of splices: GC/AG |	1450719
                       Number of splices: AT/AC |	149212
               Number of splices: Non-canonical |	811361
                      Mismatch rate per base, % |	0.25%
                         Deletion rate per base |	0.03%
                        Deletion average length |	2.04
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.57
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	5399129
             % of reads mapped to multiple loci |	2.85%
        Number of reads mapped to too many loci |	459008
             % of reads mapped to too many loci |	0.24%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1688164
                 % of reads unmapped: too short |	0.89%
                Number of reads unmapped: other |	251180
                     % of reads unmapped: other |	0.13%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%