File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/9605c861ba3d65969853b1fde3b8e1/.command.log
Size
741 bytes
Task
NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION (tih_rna_sample_00692_B23MVV7LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/229f3e1b65659c50ed0b3d11d7c637/tih_rna_sample_00692_B23MVV7LT4_1.features.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/9605c861ba3d65969853b1fde3b8e1/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/9605c861ba3d65969853b1fde3b8e1/.command.sh
==> STAGING COMPLETE (3 inputs)

Predicting contamination for 1 sample(s)...
Detection threshold: VAF_p90 < 0.9999
Level estimation: contamination_pct = -215.87 * vaf_p90 + 215.65

  tih_rna_sample_00692_B23MVV7LT4_1: vaf_p90=0.999042 -> CONTAMINATED (~0.0%)

Output saved to: tih_rna_sample_00692_B23MVV7LT4_1.predictions.csv
Summary: 1/1 samples flagged as contaminated