File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/2af77f840b9467b2438f6a1561dd16/.command.log
Size
742 bytes
Task
NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION (tih_rna_sample_00761_B23MVV7LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/c8f1556d906d6306290c7969322420/tih_rna_sample_00761_B23MVV7LT4_1.features.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/2af77f840b9467b2438f6a1561dd16/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/2af77f840b9467b2438f6a1561dd16/.command.run
==> STAGING COMPLETE (3 inputs)

Predicting contamination for 1 sample(s)...
Detection threshold: VAF_p90 < 0.9999
Level estimation: contamination_pct = -215.87 * vaf_p90 + 215.65

  tih_rna_sample_00761_B23MVV7LT4_1: vaf_p90=0.952000 -> CONTAMINATED (~10.1%)

Output saved to: tih_rna_sample_00761_B23MVV7LT4_1.predictions.csv
Summary: 1/1 samples flagged as contaminated