AIH curated blacklist: matched 9 fusion rows (breakpoint_ID in qualified set)
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ARRIBA FILTERING SUMMARY
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Total fusions: 221
Pass (FILTER=PASS): 8 (3.6%)
Fail (FILTER=FAIL): 213 (96.4%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 9
All 9 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 39
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 37
confidence_below_min(medium<high): 34
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 30
confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 19
confidence_below_min(low<high): 10
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 8
confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 6
confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 6
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 4
total_reads_below_min(6.0<8.0): 3
confidence_below_min(medium<high);aih_curated_blacklist: 3
aih_curated_blacklist: 2
confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 2
total_reads_below_min(4.0<8.0): 2
Breakdown by confidence:
high: 8 pass, 8 fail (total: 16)
low: 0 pass, 121 fail (total: 121)
medium: 0 pass, 84 fail (total: 84)
Arriba filter: 221 rows -> 8 PASS; wrote tih_rna_sample_00612_B23MVV7LT4_1.arriba.fusions.filtered.tsv and tih_rna_sample_00612_B23MVV7LT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: tih_rna_sample_00612_B23MVV7LT4_1.arriba.fusions.filter_summary.txt