File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/61995c0bcbaf9522be7cfd5c53198d/.command.log
Size
729 bytes
Task
NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION (FFPE_V4_0002_RNA_0001_B23MVV7LT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/61995c0bcbaf9522be7cfd5c53198d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/97/b1cf0c6cbcfe47d343d84156885ee1/FFPE_V4_0002_RNA_0001_B23MVV7LT4_1.features.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/61995c0bcbaf9522be7cfd5c53198d/.command.run
==> STAGING COMPLETE (3 inputs)

Predicting contamination for 1 sample(s)...
Detection threshold: VAF_p90 < 0.9999
Level estimation: contamination_pct = -215.87 * vaf_p90 + 215.65

  FFPE_V4_0002_RNA_0001_B23MVV7LT4_1: vaf_p90=1.000000 -> CLEAN

Output saved to: FFPE_V4_0002_RNA_0001_B23MVV7LT4_1.predictions.csv
Summary: 0/1 samples flagged as contaminated