File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/180e5d94607dd74b3fc64de0f2538a/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 09:21:32
                             Started mapping on |	Jun 08 09:28:05
                                    Finished on |	Jun 08 10:05:02
       Mapping speed, Million of reads per hour |	329.51

                          Number of input reads |	202924806
                      Average input read length |	238
                                    UNIQUE READS:
                   Uniquely mapped reads number |	193404072
                        Uniquely mapped reads % |	95.31%
                          Average mapped length |	237.64
                       Number of splices: Total |	155568717
            Number of splices: Annotated (sjdb) |	152293688
                       Number of splices: GT/AG |	153385572
                       Number of splices: GC/AG |	1164284
                       Number of splices: AT/AC |	148068
               Number of splices: Non-canonical |	870793
                      Mismatch rate per base, % |	0.42%
                         Deletion rate per base |	0.03%
                        Deletion average length |	1.96
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.62
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	6790365
             % of reads mapped to multiple loci |	3.35%
        Number of reads mapped to too many loci |	325728
             % of reads mapped to too many loci |	0.16%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1880221
                 % of reads unmapped: too short |	0.93%
                Number of reads unmapped: other |	524420
                     % of reads unmapped: other |	0.26%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%