Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/ea56f175de82117e7c12978d47ec43/tih_rna_sample_00574_B23MVV7LT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/3b5110f115d8d8041fa626cea3587d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/3b5110f115d8d8041fa626cea3587d/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory