File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/b41b5df773d7b3ada2ff49d301130d/.command.log
Size
1.1 KB
Task
NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (tih_rna_sample_00572_B23MVV7LT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/f87826ead363a4e16184718eb41f41/tih_rna_sample_00572_B23MVV7LT4_1
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/7da022ec1ee24ba16ad32f3f529e32/tih_rna_sample_00572_B23MVV7LT4_1.sample_qc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/b41b5df773d7b3ada2ff49d301130d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/b41b5df773d7b3ada2ff49d301130d/.command.run
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: tih_rna_sample_00572_B23MVV7LT4_1/abundance.h5
Successfully converted tih_rna_sample_00572_B23MVV7LT4_1/abundance.h5 to tih_rna_sample_00572_B23MVV7LT4_1_kallisto_mqc.tsv
  Sample: tih_rna_sample_00572_B23MVV7LT4_1
  Mean Fragment Length: 140.7 bp
  Median Fragment Length: 130.0 bp
  pct_mito_est_counts: 0.005%
  pct_ribo_est_counts: 0.605%
  pct_hk_est_counts: 0.357%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.011%
  pct_ribo_tpm: 1.926%
  pct_hk_tpm: 0.563%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 0.124%