Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/bbe8eb09d54ddceb7d91bb23f412ab/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/9c03cd834a32611d3a32a307ada573/tih_rna_sample_00569_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/3ec8b6fde5cd18064756b7562f795b/tih_rna_sample_00569_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/bbe8eb09d54ddceb7d91bb23f412ab/.command.run
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00569_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
          1