Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/349b1a262d8945b9c02122a36dda6c/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/780a4a4f2c5830e6bfba87b9e4e63d/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/f7c82b842314cf94a6f8655bcbf1c4/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-labdata-rnd-dev-s3/illumina/20260428_LH00995_0034_B23MVV7LT4/InterOp/ExtendedTileMetricsOut.bin
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/f7c82b842314cf94a6f8655bcbf1c4/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/5f7640cd01416d9f637b6bdb52434d/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-labdata-rnd-dev-s3/illumina/20260428_LH00995_0034_B23MVV7LT4/InterOp/EmpiricalPhasingMetricsOut.bin
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/3eb27deb513b5a846666a492f516bd/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/349b1a262d8945b9c02122a36dda6c/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/f7c82b842314cf94a6f8655bcbf1c4/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/cb58d67bad231f615530c12041253b/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/dfd219dfb45f2638a08ab2e78dcec6/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/780a4a4f2c5830e6bfba87b9e4e63d/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-labdata-rnd-dev-s3/illumina/20260428_LH00995_0034_B23MVV7LT4/InterOp/TileMetricsOut.bin
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/cb58d67bad231f615530c12041253b/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/be903bdd57aaa3ce0c2c9a3eb7116f/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/be903bdd57aaa3ce0c2c9a3eb7116f/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/be903bdd57aaa3ce0c2c9a3eb7116f/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/780a4a4f2c5830e6bfba87b9e4e63d/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/5f7640cd01416d9f637b6bdb52434d/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/349b1a262d8945b9c02122a36dda6c/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/577a4af7a964e9587f48ca40ce0ae3/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/577a4af7a964e9587f48ca40ce0ae3/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/dfd219dfb45f2638a08ab2e78dcec6/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/dfd219dfb45f2638a08ab2e78dcec6/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/cb58d67bad231f615530c12041253b/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/577a4af7a964e9587f48ca40ce0ae3/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/3eb27deb513b5a846666a492f516bd/.command.run
  Downloading: s3://natera-labdata-rnd-dev-s3/illumina/20260428_LH00995_0034_B23MVV7LT4/RunInfo.xml
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/5f7640cd01416d9f637b6bdb52434d/output/Reports/Index_Hopping_Counts.csv
==> STAGING COMPLETE (30 inputs)

Wrote flowcell_qc.csv with 13/13 metrics populated