File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/8c71d21dd377f2ed5e3a99ac023017/.command.log
Size
3.6 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (tih_rna_sample_00592_B23MVV7LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/66f46740839d90b706a26af6e255f4/tih_rna_sample_00592_B23MVV7LT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-7324c8a8-f474-426a-a5c9-715912777f94/c4/140ab148cdcf1ed9bdffe91f534e47/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/8c71d21dd377f2ed5e3a99ac023017/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/8c71d21dd377f2ed5e3a99ac023017/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/1c77b66d3a8bd6d93e519eeee3cae4/tih_rna_sample_00592_B23MVV7LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
TLK2P1--AC110079.1
starfusion
AC013268.1--MALL
starfusion
LINC01002--TERT
starfusion
TLK2--LINC01347
starfusion
COX6CP1--COX6C
starfusion
EPS8L2--DRD4
starfusion
RPL23AP25(8114)--TERT
arriba
TVP23C--CDRT4
arriba
STX16--NPEPL1
arriba
ZC3H6--ZC3H8
arriba
AC092807.3--DDAH1
arriba
SVIL-AS1--LYZL1
arriba
SVIL-AS1--AL158167.1
arriba

  0%|          | 0/13 [00:00<?, ?it/s]
Processing TLK2P1--AC110079.1:   0%|          | 0/13 [00:00<?, ?it/s]
Processing TLK2P1--AC110079.1:   8%|▊         | 1/13 [00:00<00:01,  9.26it/s]
Processing AC013268.1--MALL:   8%|▊         | 1/13 [00:00<00:01,  9.26it/s]  
Processing AC013268.1--MALL:  15%|█▌        | 2/13 [00:00<00:01,  9.49it/s]
Processing LINC01002--TERT:  15%|█▌        | 2/13 [00:00<00:01,  9.49it/s] 
Processing LINC01002--TERT:  23%|██▎       | 3/13 [00:00<00:01,  9.56it/s]
Processing TLK2--LINC01347:  23%|██▎       | 3/13 [00:00<00:01,  9.56it/s]
Processing TLK2--LINC01347:  31%|███       | 4/13 [00:00<00:00,  9.59it/s]
Processing COX6CP1--COX6C:  31%|███       | 4/13 [00:00<00:00,  9.59it/s] 
Processing COX6CP1--COX6C:  38%|███▊      | 5/13 [00:00<00:00,  9.62it/s]
Processing EPS8L2--DRD4:  38%|███▊      | 5/13 [00:00<00:00,  9.62it/s]  
Processing EPS8L2--DRD4:  46%|████▌     | 6/13 [00:00<00:00,  9.63it/s]
Processing RPL23AP25(8114)--TERT:  46%|████▌     | 6/13 [00:00<00:00,  9.63it/s]
Processing RPL23AP25(8114)--TERT:  54%|█████▍    | 7/13 [00:00<00:00,  9.64it/s]
Processing TVP23C--CDRT4:  54%|█████▍    | 7/13 [00:00<00:00,  9.64it/s]        
Processing TVP23C--CDRT4:  62%|██████▏   | 8/13 [00:00<00:00,  9.64it/s]
Processing STX16--NPEPL1:  62%|██████▏   | 8/13 [00:00<00:00,  9.64it/s]
Processing STX16--NPEPL1:  69%|██████▉   | 9/13 [00:00<00:00,  9.65it/s]
Processing ZC3H6--ZC3H8:  69%|██████▉   | 9/13 [00:00<00:00,  9.65it/s] 
Processing ZC3H6--ZC3H8:  77%|███████▋  | 10/13 [00:01<00:00,  9.65it/s]
Processing AC092807.3--DDAH1:  77%|███████▋  | 10/13 [00:01<00:00,  9.65it/s]
Processing AC092807.3--DDAH1:  85%|████████▍ | 11/13 [00:01<00:00,  9.65it/s]
Processing SVIL-AS1--LYZL1:  85%|████████▍ | 11/13 [00:01<00:00,  9.65it/s]  
Processing SVIL-AS1--LYZL1:  92%|█████████▏| 12/13 [00:01<00:00,  9.65it/s]
Processing SVIL-AS1--AL158167.1:  92%|█████████▏| 12/13 [00:01<00:00,  9.65it/s]
Processing SVIL-AS1--AL158167.1: 100%|██████████| 13/13 [00:01<00:00,  9.65it/s]
Processing SVIL-AS1--AL158167.1: 100%|██████████| 13/13 [00:01<00:00,  9.62it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory