File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/7a22b2de962dca980c007eb2dc48d4/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 09:21:04
                             Started mapping on |	Jun 08 09:27:25
                                    Finished on |	Jun 08 10:04:22
       Mapping speed, Million of reads per hour |	288.92

                          Number of input reads |	177926816
                      Average input read length |	238
                                    UNIQUE READS:
                   Uniquely mapped reads number |	168331067
                        Uniquely mapped reads % |	94.61%
                          Average mapped length |	237.64
                       Number of splices: Total |	136678197
            Number of splices: Annotated (sjdb) |	134199883
                       Number of splices: GT/AG |	134766991
                       Number of splices: GC/AG |	1004869
                       Number of splices: AT/AC |	93761
               Number of splices: Non-canonical |	812576
                      Mismatch rate per base, % |	0.39%
                         Deletion rate per base |	0.03%
                        Deletion average length |	1.92
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.72
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	6508753
             % of reads mapped to multiple loci |	3.66%
        Number of reads mapped to too many loci |	902341
             % of reads mapped to too many loci |	0.51%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1826199
                 % of reads unmapped: too short |	1.03%
                Number of reads unmapped: other |	358456
                     % of reads unmapped: other |	0.20%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%