Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-7324c8a8-f474-426a-a5c9-715912777f94/c4/140ab148cdcf1ed9bdffe91f534e47/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/2afbfc72c1a70fb5b68c3d6a3f834b/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/2afbfc72c1a70fb5b68c3d6a3f834b/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/0ae8fbaa6012bb583fb1b256a8216b/tih_rna_sample_00576_B23MVV7LT4_1.arriba.fusions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/22/e2a532e9f78d9ae701b57a14a8408c/tih_rna_sample_00576_B23MVV7LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
0%| | 0/16 [00:00<?, ?it/s]SSU72--FBXO42
starfusion
arriba
CU104787.1--KMT2C
starfusion
FBXO42--TRNP1
starfusion
arriba
STX16--NPEPL1
starfusion
arriba
TLK2P1--AC110079.1
starfusion
AC008443.2--BAGE2
starfusion
TLK2--AC240565.1
starfusion
TPTE--AL356585.3
starfusion
KHDRBS3--ZFAT
starfusion
arriba
CCDC40--ENPP7
starfusion
arriba
PAFAH1B3--GSK3A
arriba
TVP23C--CDRT4
arriba
TEX2--AC105021.1
arriba
TEX2--TMEM100
arriba
SAMD12--XKR6
arriba
FBXO42--OSTCP2
arriba
Processing SSU72--FBXO42: 0%| | 0/16 [00:00<?, ?it/s]
Processing SSU72--FBXO42: 6%|▋ | 1/16 [00:00<00:01, 9.23it/s]
Processing CU104787.1--KMT2C: 6%|▋ | 1/16 [00:00<00:01, 9.23it/s]
Processing CU104787.1--KMT2C: 12%|█▎ | 2/16 [00:00<00:01, 9.43it/s]
Processing FBXO42--TRNP1: 12%|█▎ | 2/16 [00:00<00:01, 9.43it/s]
Processing FBXO42--TRNP1: 19%|█▉ | 3/16 [00:00<00:01, 9.48it/s]
Processing STX16--NPEPL1: 19%|█▉ | 3/16 [00:00<00:01, 9.48it/s]
Processing STX16--NPEPL1: 25%|██▌ | 4/16 [00:00<00:01, 9.50it/s]
Processing TLK2P1--AC110079.1: 25%|██▌ | 4/16 [00:00<00:01, 9.50it/s]
Processing TLK2P1--AC110079.1: 31%|███▏ | 5/16 [00:00<00:01, 9.48it/s]
Processing AC008443.2--BAGE2: 31%|███▏ | 5/16 [00:00<00:01, 9.48it/s]
Processing AC008443.2--BAGE2: 38%|███▊ | 6/16 [00:00<00:01, 9.48it/s]
Processing TLK2--AC240565.1: 38%|███▊ | 6/16 [00:00<00:01, 9.48it/s]
Processing TLK2--AC240565.1: 44%|████▍ | 7/16 [00:00<00:00, 9.48it/s]
Processing TPTE--AL356585.3: 44%|████▍ | 7/16 [00:00<00:00, 9.48it/s]
Processing TPTE--AL356585.3: 50%|█████ | 8/16 [00:00<00:00, 9.49it/s]
Processing KHDRBS3--ZFAT: 50%|█████ | 8/16 [00:00<00:00, 9.49it/s]
Processing KHDRBS3--ZFAT: 56%|█████▋ | 9/16 [00:00<00:00, 9.50it/s]
Processing CCDC40--ENPP7: 56%|█████▋ | 9/16 [00:00<00:00, 9.50it/s]
Processing CCDC40--ENPP7: 62%|██████▎ | 10/16 [00:01<00:00, 9.51it/s]
Processing PAFAH1B3--GSK3A: 62%|██████▎ | 10/16 [00:01<00:00, 9.51it/s]
Processing PAFAH1B3--GSK3A: 69%|██████▉ | 11/16 [00:01<00:00, 9.52it/s]
Processing TVP23C--CDRT4: 69%|██████▉ | 11/16 [00:01<00:00, 9.52it/s]
Processing TVP23C--CDRT4: 75%|███████▌ | 12/16 [00:01<00:00, 9.52it/s]
Processing TEX2--AC105021.1: 75%|███████▌ | 12/16 [00:01<00:00, 9.52it/s]
Processing TEX2--AC105021.1: 81%|████████▏ | 13/16 [00:01<00:00, 9.52it/s]
Processing TEX2--TMEM100: 81%|████████▏ | 13/16 [00:01<00:00, 9.52it/s]
Processing TEX2--TMEM100: 88%|████████▊ | 14/16 [00:01<00:00, 9.52it/s]
Processing SAMD12--XKR6: 88%|████████▊ | 14/16 [00:01<00:00, 9.52it/s]
Processing SAMD12--XKR6: 94%|█████████▍| 15/16 [00:01<00:00, 9.52it/s]
Processing FBXO42--OSTCP2: 94%|█████████▍| 15/16 [00:01<00:00, 9.52it/s]
Processing FBXO42--OSTCP2: 100%|██████████| 16/16 [00:01<00:00, 9.52it/s]
Processing FBXO42--OSTCP2: 100%|██████████| 16/16 [00:01<00:00, 9.50it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory