Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-7324c8a8-f474-426a-a5c9-715912777f94/c4/140ab148cdcf1ed9bdffe91f534e47/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/2afbfc72c1a70fb5b68c3d6a3f834b/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/2afbfc72c1a70fb5b68c3d6a3f834b/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/0ae8fbaa6012bb583fb1b256a8216b/tih_rna_sample_00576_B23MVV7LT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/22/e2a532e9f78d9ae701b57a14a8408c/tih_rna_sample_00576_B23MVV7LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...

  0%|          | 0/16 [00:00<?, ?it/s]SSU72--FBXO42
starfusion
arriba
CU104787.1--KMT2C
starfusion
FBXO42--TRNP1
starfusion
arriba
STX16--NPEPL1
starfusion
arriba
TLK2P1--AC110079.1
starfusion
AC008443.2--BAGE2
starfusion
TLK2--AC240565.1
starfusion
TPTE--AL356585.3
starfusion
KHDRBS3--ZFAT
starfusion
arriba
CCDC40--ENPP7
starfusion
arriba
PAFAH1B3--GSK3A
arriba
TVP23C--CDRT4
arriba
TEX2--AC105021.1
arriba
TEX2--TMEM100
arriba
SAMD12--XKR6
arriba
FBXO42--OSTCP2
arriba

Processing SSU72--FBXO42:   0%|          | 0/16 [00:00<?, ?it/s]
Processing SSU72--FBXO42:   6%|▋         | 1/16 [00:00<00:01,  9.23it/s]
Processing CU104787.1--KMT2C:   6%|▋         | 1/16 [00:00<00:01,  9.23it/s]
Processing CU104787.1--KMT2C:  12%|█▎        | 2/16 [00:00<00:01,  9.43it/s]
Processing FBXO42--TRNP1:  12%|█▎        | 2/16 [00:00<00:01,  9.43it/s]    
Processing FBXO42--TRNP1:  19%|█▉        | 3/16 [00:00<00:01,  9.48it/s]
Processing STX16--NPEPL1:  19%|█▉        | 3/16 [00:00<00:01,  9.48it/s]
Processing STX16--NPEPL1:  25%|██▌       | 4/16 [00:00<00:01,  9.50it/s]
Processing TLK2P1--AC110079.1:  25%|██▌       | 4/16 [00:00<00:01,  9.50it/s]
Processing TLK2P1--AC110079.1:  31%|███▏      | 5/16 [00:00<00:01,  9.48it/s]
Processing AC008443.2--BAGE2:  31%|███▏      | 5/16 [00:00<00:01,  9.48it/s] 
Processing AC008443.2--BAGE2:  38%|███▊      | 6/16 [00:00<00:01,  9.48it/s]
Processing TLK2--AC240565.1:  38%|███▊      | 6/16 [00:00<00:01,  9.48it/s] 
Processing TLK2--AC240565.1:  44%|████▍     | 7/16 [00:00<00:00,  9.48it/s]
Processing TPTE--AL356585.3:  44%|████▍     | 7/16 [00:00<00:00,  9.48it/s]
Processing TPTE--AL356585.3:  50%|█████     | 8/16 [00:00<00:00,  9.49it/s]
Processing KHDRBS3--ZFAT:  50%|█████     | 8/16 [00:00<00:00,  9.49it/s]   
Processing KHDRBS3--ZFAT:  56%|█████▋    | 9/16 [00:00<00:00,  9.50it/s]
Processing CCDC40--ENPP7:  56%|█████▋    | 9/16 [00:00<00:00,  9.50it/s]
Processing CCDC40--ENPP7:  62%|██████▎   | 10/16 [00:01<00:00,  9.51it/s]
Processing PAFAH1B3--GSK3A:  62%|██████▎   | 10/16 [00:01<00:00,  9.51it/s]
Processing PAFAH1B3--GSK3A:  69%|██████▉   | 11/16 [00:01<00:00,  9.52it/s]
Processing TVP23C--CDRT4:  69%|██████▉   | 11/16 [00:01<00:00,  9.52it/s]  
Processing TVP23C--CDRT4:  75%|███████▌  | 12/16 [00:01<00:00,  9.52it/s]
Processing TEX2--AC105021.1:  75%|███████▌  | 12/16 [00:01<00:00,  9.52it/s]
Processing TEX2--AC105021.1:  81%|████████▏ | 13/16 [00:01<00:00,  9.52it/s]
Processing TEX2--TMEM100:  81%|████████▏ | 13/16 [00:01<00:00,  9.52it/s]   
Processing TEX2--TMEM100:  88%|████████▊ | 14/16 [00:01<00:00,  9.52it/s]
Processing SAMD12--XKR6:  88%|████████▊ | 14/16 [00:01<00:00,  9.52it/s] 
Processing SAMD12--XKR6:  94%|█████████▍| 15/16 [00:01<00:00,  9.52it/s]
Processing FBXO42--OSTCP2:  94%|█████████▍| 15/16 [00:01<00:00,  9.52it/s]
Processing FBXO42--OSTCP2: 100%|██████████| 16/16 [00:01<00:00,  9.52it/s]
Processing FBXO42--OSTCP2: 100%|██████████| 16/16 [00:01<00:00,  9.50it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory