Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/00b0020c7842118c0f33bf86f2bf8b/tih_rna_sample_00576_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/0af3b1034ae1e19ded8c193cff3251/tih_rna_sample_00576_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/e88fd7fc7045f143707b3a331bf8bc/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/969ca38afbec2fb26cc07c5e87a705/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/969ca38afbec2fb26cc07c5e87a705/.command.run
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 189008122
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00576_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	189008122
Known Splicing Events:	187227555
Partial Novel Splicing Events:	1161304
Novel Splicing Events:	554816
Filtered Splicing Events:	64447

Total splicing  Junctions:	435902
Known Splicing Junctions:	252773
Partial Novel Splicing Junctions:	115099
Novel Splicing Junctions:	68030

===================================================================
Create BED file ...
Create Interact file ...