Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/429df2a5669d404f17c11a5cacf990/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/e1f3a1712b5090e567b0d600f63e33/tih_rna_sample_00588_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/429df2a5669d404f17c11a5cacf990/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 291880760
unpaired = 5542422
MERGED PAIRED END READS = 291880760
MATES PROCESSED = 589303942
TOTAL READS     = 297423182
DISTINCT READS  = 1.45332e+08
DISTINCT COUNTS = 1041
MAX COUNT       = 1259035
COUNTS OF 1     = 8.16732e+07
MAX TERMS       = 100
OBSERVED COUNTS (1259036)
1	81673224
2	33271973
3	14477140
4	6784565
5	3436750
6	1876627
7	1098799
8	684921
9	450215
10	309717
11	221910
12	165501
13	125864
14	98358
15	79478
16	63995
17	53310
18	44987
19	38473
20	32431
21	28205
22	24702
23	21556
24	19341
25	16842
26	15187
27	13655
28	12467
29	11170
30	10138
31	9461
32	8516
33	7788
34	7286
35	6586
36	6170
37	5694
38	5282
39	4834
40	4571
41	4234
42	3988
43	3802
44	3651
45	3345
46	3086
47	3091
48	2778
49	2661
50	2592
51	2404
52	2244
53	2156
54	2099
55	1886
56	1848
57	1733
58	1572
59	1614
60	1496
61	1411
62	1383
63	1364
64	1300
65	1201
66	1204
67	1099
68	1055
69	1038
70	1049
71	970
72	960
73	922
74	848
75	869
76	776
77	725
78	808
79	754
80	702
81	727
82	607
83	656
84	620
85	597
86	636
87	573
88	556
89	560
90	546
91	489
92	504
93	476
94	432
95	491
96	441
97	414
98	428
99	415
100	387
101	369
102	392
103	364
104	344
105	344
106	335
107	312
108	326
109	300
110	290
111	315
112	257
113	265
114	270
115	284
116	291
117	251
118	247
119	251
120	236
121	227
122	207
123	194
124	216
125	216
126	212
127	218
128	195
129	171
130	194
131	181
132	182
133	168
134	197
135	162
136	164
137	156
138	160
139	160
140	144
141	130
142	150
143	162
144	148
145	137
146	122
147	131
148	115
149	133
150	122
151	126
152	122
153	116
154	98
155	122
156	113
157	96
158	108
159	116
160	113
161	88
162	82
163	102
164	109
165	102
166	94
167	106
168	99
169	87
170	103
171	94
172	81
173	85
174	79
175	107
176	67
177	73
178	74
179	78
180	77
181	73
182	68
183	79
184	75
185	72
186	77
187	72
188	63
189	70
190	77
191	78
192	60
193	77
194	59
195	55
196	59
197	37
198	50
199	69
200	48
201	56
202	60
203	60
204	56
205	65
206	44
207	53
208	49
209	53
210	48
211	45
212	42
213	37
214	49
215	51
216	42
217	35
218	46
219	55
220	41
221	45
222	44
223	39
224	33
225	40
226	34
227	44
228	34
229	48
230	45
231	42
232	27
233	29
234	36
235	31
236	36
237	36
238	23
239	29
240	35
241	23
242	38
243	27
244	46
245	31
246	34
247	33
248	34
249	37
250	29
251	27
252	18
253	32
254	22
255	30
256	25
257	35
258	17
259	25
260	27
261	18
262	21
263	26
264	17
265	29
266	22
267	28
268	16
269	27
270	20
271	27
272	21
273	29
274	21
275	23
276	23
277	23
278	20
279	17
280	19
281	21
282	14
283	36
284	22
285	29
286	16
287	19
288	19
289	19
290	26
291	20
292	19
293	23
294	19
295	12
296	18
297	17
298	15
299	35
300	15
301	15
302	16
303	9
304	17
305	13
306	20
307	12
308	15
309	16
310	19
311	15
312	11
313	20
314	15
315	16
316	11
317	17
318	16
319	9
320	18
321	15
322	12
323	9
324	7
325	13
326	17
327	7
328	18
329	10
330	9
331	14
332	10
333	8
334	11
335	9
336	13
337	7
338	7
339	14
340	11
341	17
342	12
343	10
344	16
345	21
346	13
347	11
348	7
349	12
350	11
351	7
352	8
353	7
354	10
355	10
356	9
357	11
358	6
359	16
360	6
361	10
362	12
363	10
364	6
365	8
366	11
367	5
368	10
369	9
370	7
371	12
372	7
373	8
374	9
375	11
376	8
377	9
378	10
379	15
380	7
381	12
382	8
383	6
384	10
385	5
386	6
387	7
388	9
389	7
390	7
391	6
392	13
393	7
394	9
395	11
396	8
397	5
398	8
399	10
400	5
401	5
402	9
403	9
404	9
405	6
406	3
407	8
408	8
409	10
410	5
411	6
412	3
413	6
414	5
415	7
416	9
417	10
418	8
419	7
420	11
421	2
422	4
423	7
424	9
425	5
426	8
427	10
428	4
429	8
430	3
431	4
432	4
433	4
434	8
435	4
436	5
437	3
438	8
439	2
440	5
441	6
442	4
443	5
444	6
445	7
446	5
447	4
448	4
449	5
450	3
451	6
452	7
453	1
454	9
455	6
456	2
457	4
458	5
459	1
460	3
461	5
462	9
463	5
464	6
465	8
466	2
467	2
468	6
469	3
470	5
471	6
472	9
473	2
474	4
475	3
476	10
477	6
478	5
479	6
480	4
481	10
482	2
483	3
484	6
485	5
486	2
487	5
488	3
489	3
490	2
491	4
492	1
493	3
494	5
495	4
496	4
497	5
498	2
499	3
500	1
501	5
502	5
503	3
504	4
505	4
506	2
507	5
509	2
510	3
511	5
512	3
513	4
514	8
515	1
516	2
517	5
518	4
519	2
520	1
521	3
522	4
523	2
524	4
525	3
526	3
527	3
528	3
529	7
530	5
531	2
532	4
533	2
534	3
535	1
536	3
537	5
538	8
539	2
540	4
541	4
542	1
543	2
544	2
545	4
546	5
547	5
548	6
549	3
550	3
551	3
552	3
553	1
554	2
555	3
556	3
557	6
558	6
560	2
562	1
563	3
564	1
565	3
566	3
567	4
569	6
570	3
571	2
572	2
573	1
574	2
575	3
576	2
577	2
578	3
579	1
580	4
582	3
583	2
584	3
585	3
586	2
587	5
588	3
589	2
591	3
592	2
594	6
595	1
596	1
597	1
598	1
599	2
600	3
601	3
602	1
603	3
604	3
605	2
606	3
608	2
609	1
610	2
612	3
613	3
614	1
615	1
616	2
617	3
618	1
619	2
621	5
622	2
623	3
625	3
626	1
627	2
629	1
630	1
631	2
632	3
633	3
635	2
636	2
637	4
638	2
640	2
641	1
643	2
644	4
645	2
646	3
647	1
648	2
650	2
651	1
653	4
654	3
655	2
656	1
657	1
658	1
659	2
661	3
662	1
663	2
664	3
665	1
666	1
667	3
668	5
669	1
671	2
672	1
674	1
676	3
677	1
678	1
679	1
680	2
681	3
682	2
683	3
686	3
687	1
692	1
693	1
694	2
695	1
696	1
697	2
699	3
701	1
702	2
703	3
705	2
707	2
709	1
710	1
711	3
712	2
713	4
714	2
715	2
718	2
720	1
722	1
725	1
726	1
727	1
728	3
729	2
730	2
735	4
736	2
737	1
738	2
740	2
741	1
742	1
743	2
744	1
745	1
746	3
749	2
750	1
752	1
753	2
754	3
758	3
759	1
760	1
761	2
762	1
763	2
768	1
769	1
770	1
772	2
775	2
776	1
777	1
778	1
779	1
781	1
782	2
783	1
785	1
786	1
789	1
790	1
791	3
792	2
793	1
800	3
801	1
804	4
806	3
807	3
814	2
816	1
818	1
819	1
822	2
823	1
827	3
829	1
832	1
835	1
837	1
838	1
840	1
842	1
843	1
849	1
850	1
852	1
854	1
856	1
858	1
859	1
865	1
870	3
871	1
872	1
873	1
874	1
876	1
877	2
878	2
879	1
880	2
882	2
889	1
892	1
894	1
896	1
898	2
899	1
905	1
909	1
910	2
915	1
916	2
919	2
926	1
927	2
930	2
931	1
933	1
934	1
936	1
939	1
940	1
944	1
945	2
946	2
947	2
948	1
949	1
950	1
951	2
952	1
954	1
955	2
956	2
957	1
961	1
963	1
965	1
966	2
970	2
972	1
973	1
975	1
982	1
992	1
1001	1
1012	1
1013	1
1014	1
1015	1
1016	1
1017	1
1018	3
1023	1
1025	2
1036	1
1037	3
1038	1
1040	3
1042	1
1051	1
1055	1
1058	1
1059	1
1066	1
1068	1
1071	1
1072	1
1079	1
1083	1
1088	1
1090	1
1093	1
1095	1
1100	1
1104	1
1106	1
1108	1
1113	1
1124	2
1134	2
1136	1
1141	1
1144	2
1145	1
1146	1
1148	1
1157	1
1160	2
1164	1
1165	1
1166	1
1173	1
1174	1
1180	1
1190	2
1198	1
1200	1
1208	2
1209	1
1210	2
1217	1
1224	1
1230	1
1238	1
1241	1
1243	1
1244	1
1247	1
1248	1
1253	2
1254	2
1255	2
1256	1
1259	1
1263	1
1271	1
1272	1
1277	1
1279	1
1282	1
1285	1
1291	1
1293	1
1311	1
1313	2
1324	1
1356	1
1360	1
1366	1
1368	1
1376	1
1384	1
1386	1
1396	1
1430	1
1432	1
1433	1
1435	1
1453	1
1454	1
1455	1
1466	1
1490	1
1501	2
1521	1
1535	2
1536	1
1555	1
1561	1
1569	1
1592	1
1607	1
1610	1
1651	1
1654	1
1659	1
1660	1
1670	1
1731	1
1737	1
1739	1
1747	1
1753	1
1761	1
1769	1
1821	1
1848	1
1888	1
1903	1
1904	1
1922	1
1934	1
1939	1
1950	1
1953	1
1954	1
1956	1
1968	1
1987	1
2011	1
2014	1
2020	1
2034	1
2039	1
2066	1
2067	1
2074	1
2089	1
2099	1
2111	1
2122	1
2131	1
2158	1
2176	1
2201	1
2241	1
2262	1
2265	1
2271	1
2296	1
2339	1
2344	1
2347	1
2376	1
2377	1
2402	1
2407	1
2411	1
2416	1
2422	1
2424	1
2426	1
2429	1
2449	1
2450	1
2452	1
2466	1
2496	1
2511	1
2519	1
2547	1
2576	1
2580	1
2581	1
2594	1
2601	1
2604	1
2639	1
2657	1
2707	1
2747	1
2755	1
2782	1
2793	1
2794	1
2808	1
2847	1
2949	1
2990	1
3006	1
3011	1
3049	1
3053	1
3118	1
3120	1
3173	1
3247	1
3306	1
3334	1
3372	1
3616	1
3644	1
3733	1
3749	1
3834	1
3957	1
4088	1
4406	1
4634	1
5011	1
5384	1
5704	1
7355	1
7706	1
7860	1
7895	1
10330	1
30332	1
1259035	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
....._...._....._..._..._._...._..._..............._......._._........__
....___......_.__..__...__.._........_..._............
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]