AIH curated blacklist: matched 12 fusion rows (breakpoint_ID in qualified set)
================================================================================
ARRIBA FILTERING SUMMARY
================================================================================
Total fusions: 443
Pass (FILTER=PASS): 59 (13.3%)
Fail (FILTER=FAIL): 384 (86.7%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 12
All 12 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 78
confidence_below_min(medium<high): 64
confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 35
confidence_below_min(low<high): 26
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 24
confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 22
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 20
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 18
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 18
confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 17
confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 10
confidence_below_min(low<high);total_reads_below_min(6.0<8.0): 10
confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 9
confidence_below_min(medium<high);aih_curated_blacklist: 5
confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 5
Breakdown by confidence:
high: 59 pass, 12 fail (total: 71)
low: 0 pass, 216 fail (total: 216)
medium: 0 pass, 156 fail (total: 156)
Arriba filter: 443 rows -> 59 PASS; wrote FFPE_HD789_01_RNA_13_B23MVV7LT4_1.arriba.fusions.filtered.tsv and FFPE_HD789_01_RNA_13_B23MVV7LT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: FFPE_HD789_01_RNA_13_B23MVV7LT4_1.arriba.fusions.filter_summary.txt