Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/15312212e7a0589b9090492b407b4f/tih_rna_sample_00754_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/c5e995ea95a0801c0d022f6bf4b802/tih_rna_sample_00754_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/af8666c181ea3a0cca18b9ddc8c709/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/af8666c181ea3a0cca18b9ddc8c709/.command.run
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00754_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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