File Info

Filename
.command.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/91bd57366b8e6536c8fd6e6479464e/.command.out
Size
1.8 KB
Attempt
  AIH curated blacklist: matched 19 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 268
  Pass (FILTER=PASS): 38 (14.2%)
  Fail (FILTER=FAIL): 230 (85.8%)

AIH curated blacklist (blacklisted flag):
  Total blacklisted: 19
  All 19 blacklisted rows have FILTER=FAIL

Failure reasons (top 15):
  confidence_below_min(medium<high): 87
  confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 27
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 19
  confidence_below_min(low<high): 17
  confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 14
  confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 11
  confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 9
  confidence_below_min(medium<high);aih_curated_blacklist: 8
  confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 7
  confidence_below_min(low<high);total_reads_below_min(6.0<8.0): 4
  confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 4
  confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 3
  total_reads_below_min(5.0<8.0): 3
  confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 3
  confidence_below_min(low<high);aih_curated_blacklist: 3

Breakdown by confidence:
  high: 38 pass, 8 fail (total: 46)
  low: 0 pass, 110 fail (total: 110)
  medium: 0 pass, 112 fail (total: 112)
Arriba filter: 268 rows -> 38 PASS; wrote tih_rna_sample_00604_B23MVV7LT4_1.arriba.fusions.filtered.tsv and tih_rna_sample_00604_B23MVV7LT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: tih_rna_sample_00604_B23MVV7LT4_1.arriba.fusions.filter_summary.txt