Done.
-parsing GTF file: /tmp/nxf.ILSmsIZhgf/tih_rna_sample_00616_B23MVV7LT4_1.gtf
* Running CMD: /usr/local/bin/STAR --runThreadN 8 --genomeDir /tmp/nxf.ILSmsIZhgf/ctat_genome_lib_build_dir/ref_genome.fa.star.idx --outSAMtype BAM SortedByCoordinate --twopassMode None --alignSJDBoverhangMin 10 --genomeSuffixLengthMax 10000 --limitBAMsortRAM 47271261705 --alignInsertionFlush Right --alignMatesGapMax 100000 --alignIntronMax 100000 --outSAMattributes All --readFilesIn /tmp/nxf.ILSmsIZhgf/tih_rna_sample_00616_B23MVV7LT4_1_1.fastp.fastq.gz /tmp/nxf.ILSmsIZhgf/tih_rna_sample_00616_B23MVV7LT4_1_2.fastp.fastq.gz --genomeFastaFiles /tmp/nxf.ILSmsIZhgf/fi_workdir/tih_rna_sample_00616_B23MVV7LT4_1.fa --outSAMfilter KeepAllAddedReferences --sjdbGTFfile /tmp/nxf.ILSmsIZhgf/fi_workdir/tih_rna_sample_00616_B23MVV7LT4_1.gtf --alignSJstitchMismatchNmax 5 -1 5 5 --scoreGapNoncan -6 --readFilesCommand 'gunzip -c'
* Running CMD: mv Aligned.sortedByCoord.out.bam tih_rna_sample_00616_B23MVV7LT4_1.star.sortedByCoord.out.bam
* Running CMD: samtools index tih_rna_sample_00616_B23MVV7LT4_1.star.sortedByCoord.out.bam
11:54:07 : INFO : Done.
-parsing GTF file: /tmp/nxf.ILSmsIZhgf/fi_workdir/tih_rna_sample_00616_B23MVV7LT4_1.gtf
-parsing /tmp/nxf.ILSmsIZhgf/fi_workdir/tih_rna_sample_00616_B23MVV7LT4_1.star.cSorted.dupsMarked.bam
[10000]
[20000]
[30000]
[40000]
[50000]
[60000]
[70000]
[80000]
[90000]
[100000]
[110000]
[120000]
[130000]
[140000]
[150000]
[160000]
[170000]
[180000]
[190000]
[200000]
[210000]
[220000]
[230000]
[240000]
[250000]
[260000]
[270000]
[280000]
[290000]
[300000]
[310000]
[320000]
[330000]
[340000]
[350000]
[360000]
[370000]
[380000]
[390000]
[400000]
[410000]
[420000]
[430000]
[440000]
[450000]
[460000]
[470000]
[480000]
[490000]
[500000]
[510000]
[520000]
[530000]
[540000]
[550000]
[560000]
[570000]
[580000]
[590000]
[600000]
[610000]
[620000]
[630000]
[640000]
[650000]
[660000]
[670000]
[680000]
[690000]
[700000]
[710000]
[720000]
[730000]
[740000]
[750000]
[760000]
[770000]
[780000]
[790000]
[800000]
[810000]
[820000]
[830000]
[840000]
[850000]
[860000]
[870000]
[880000]
[890000]
[900000]
[910000]
[920000]
[930000]
[940000]
[950000]
[960000]
[970000]
[980000]
[990000]
[1000000]
[1010000]
[1020000]
[1030000]
[1040000]
[1050000]
[1060000]
[1070000]
[1080000]
[1090000]
[1100000]
[1110000]
[1120000]
[1130000]
[1140000]
[1150000]
[1160000]
[1170000]
[1180000]
[1190000]
[1200000]
[1210000]
[1220000]
[1230000]
[1240000]
[1250000]
[1260000]
[1270000]
[1280000]
[1290000]
[1300000]
[1310000]
[1320000]
[1330000]
[1340000]
[1350000]
[1360000]
[1370000]
[1380000]
[1390000]
[1400000]
[1410000]
[1420000]
[1430000]
[1440000]
[1450000]
[1460000]
[1470000]
[1480000]
[1490000]
[1500000]
[1510000]
[1520000]
[1530000]
[1540000]
[1550000]
[1560000]
[1570000]
[1580000]
[1590000] -done parsing /tmp/nxf.ILSmsIZhgf/fi_workdir/tih_rna_sample_00616_B23MVV7LT4_1.star.cSorted.dupsMarked.bam. Extracting junction info.
junction read elimination tally: $VAR1 = {
'low complexity anchor region' => 51,
'num_hits: 6 != num_counted_on_fusion_contigs 4 ' => 68,
'small anchor length' => 297,
'num genes matched < 2' => 5,
'num_hits: 8 != num_counted_on_fusion_contigs 6 ' => 54,
'num_hits: 2 != num_counted_on_fusion_contigs 1 ' => 22,
'num_hits: 7 != num_counted_on_fusion_contigs 6 ' => 12,
'num_hits: 4 != num_counted_on_fusion_contigs 1 ' => 1,
'excessive soft clipping' => 5732,
'seq-similar region overlap' => 638,
'per_id < 96' => 4531,
'num_hits: 4 != num_counted_on_fusion_contigs 3 ' => 6,
'num_hits: 9 != num_counted_on_fusion_contigs 7 ' => 7,
'num_hits: 8 != num_counted_on_fusion_contigs 2 ' => 4,
' ** passed ** ' => 28341,
'num_hits: 7 != num_counted_on_fusion_contigs 1 ' => 67
};
-writing fusion junction support info.
-outputting the spanning read info: /tmp/nxf.ILSmsIZhgf/fi_workdir/tih_rna_sample_00616_B23MVV7LT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info.
- counting read alignments among fusion contigs.
[1000]
[2000]
[3000]
[4000]
[5000] -fusion SPANNING read extraction for scaff: AC015911.9--SLFN12L
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000] -fusion SPANNING read extraction for scaff: AC092807.3--DDAH1
[1000]
[2000] -fusion SPANNING read extraction for scaff: KLRC4--KLRK1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000] -fusion SPANNING read extraction for scaff: PCDHA10--PCDHAC1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000] -fusion SPANNING read extraction for scaff: PCDHA10--PCDHAC2
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000] -fusion SPANNING read extraction for scaff: PCDHA10--PCDHA13
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000] -fusion SPANNING read extraction for scaff: PCDHA3--PCDHAC1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000] -fusion SPANNING read extraction for scaff: PCDHA3--PCDHAC2
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000] -fusion SPANNING read extraction for scaff: PCDHA3--PCDHA13
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000] -fusion SPANNING read extraction for scaff: PCDHGA2--PCDHGA8
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000] -fusion SPANNING read extraction for scaff: PCDHGA2--PCDHGC5
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000] -fusion SPANNING read extraction for scaff: PCDHGA2--PCDHGC4
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000] -fusion SPANNING read extraction for scaff: PCDHGA2--PCDHGA10
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000] -fusion SPANNING read extraction for scaff: PCDHGA2--PCDHGB6
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000] -fusion SPANNING read extraction for scaff: PCDHGA2--PCDHGA11
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000] -fusion SPANNING read extraction for scaff: PCDHGA2--PCDHGA9
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000] -fusion SPANNING read extraction for scaff: PCDHGA2--PCDHGB7
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000] -fusion SPANNING read extraction for scaff: PCDHGA2--PCDHGC3
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000] -fusion SPANNING read extraction for scaff: PCDHGA2--PCDHGA12
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000] -fusion SPANNING read extraction for scaff: PCDHGA3--PCDHGA8
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000] -fusion SPANNING read extraction for scaff: PCDHGA3--PCDHGC5
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000] -fusion SPANNING read extraction for scaff: PCDHGA3--PCDHGC4
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000] -fusion SPANNING read extraction for scaff: PCDHGA3--PCDHGA10
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000] -fusion SPANNING read extraction for scaff: PCDHGA3--PCDHGB6
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000] -fusion SPANNING read extraction for scaff: PCDHGA3--PCDHGA11
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000] -fusion SPANNING read extraction for scaff: PCDHGA3--PCDHGA9
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000] -fusion SPANNING read extraction for scaff: PCDHGA3--PCDHGB7
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000] -fusion SPANNING read extraction for scaff: PCDHGA3--PCDHGC3
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000] -fusion SPANNING read extraction for scaff: PCDHGA3--PCDHGA12
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000] -fusion SPANNING read extraction for scaff: PCDHGA4--PCDHGA8
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000] -fusion SPANNING read extraction for scaff: PCDHGA4--PCDHGC5
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000] -fusion SPANNING read extraction for scaff: PCDHGA4--PCDHGC4
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000] -fusion SPANNING read extraction for scaff: PCDHGA4--PCDHGA10
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000] -fusion SPANNING read extraction for scaff: PCDHGA4--PCDHGB6
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000] -fusion SPANNING read extraction for scaff: PCDHGA4--PCDHGA11
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000] -fusion SPANNING read extraction for scaff: PCDHGA4--PCDHGA9
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000] -fusion SPANNING read extraction for scaff: PCDHGA4--PCDHGB7
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000] -fusion SPANNING read extraction for scaff: PCDHGA4--PCDHGC3
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000] -fusion SPANNING read extraction for scaff: PCDHGA4--PCDHGA12
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000] -fusion SPANNING read extraction for scaff: PCDHGA5--PCDHGA8
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000] -fusion SPANNING read extraction for scaff: PCDHGA5--PCDHGC5
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000] -fusion SPANNING read extraction for scaff: PCDHGA5--PCDHGC4
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000] -fusion SPANNING read extraction for scaff: PCDHGA5--PCDHGA10
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000] -fusion SPANNING read extraction for scaff: PCDHGA5--PCDHGB6
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000] -fusion SPANNING read extraction for scaff: PCDHGA5--PCDHGA11
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000] -fusion SPANNING read extraction for scaff: PCDHGA5--PCDHGA9
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000] -fusion SPANNING read extraction for scaff: PCDHGA5--PCDHGB7
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000] -fusion SPANNING read extraction for scaff: PCDHGA5--PCDHGC3
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000] -fusion SPANNING read extraction for scaff: PCDHGA5--PCDHGA12
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000] -fusion SPANNING read extraction for scaff: PCDHGA6--PCDHGA8
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000] -fusion SPANNING read extraction for scaff: PCDHGA6--PCDHGC5
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000] -fusion SPANNING read extraction for scaff: PCDHGA6--PCDHGC4
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000] -fusion SPANNING read extraction for scaff: PCDHGA6--PCDHGA10
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000] -fusion SPANNING read extraction for scaff: PCDHGA6--PCDHGB6
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000] -fusion SPANNING read extraction for scaff: PCDHGA6--PCDHGA11
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000] -fusion SPANNING read extraction for scaff: PCDHGA6--PCDHGA9
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000] -fusion SPANNING read extraction for scaff: PCDHGA6--PCDHGB7
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000] -fusion SPANNING read extraction for scaff: PCDHGA6--PCDHGC3
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000] -fusion SPANNING read extraction for scaff: PCDHGA6--PCDHGA12
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA8
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGC5
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGC4
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA10
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGB6
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA11
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA9
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGB7
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGC3
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA12
[1000] -fusion SPANNING read extraction for scaff: SNX29P1--AC138894.4
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000] -fusion SPANNING read extraction for scaff: STX16--NPEPL1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000] -fusion SPANNING read extraction for scaff: TLK2--AC240565.1
[1000]
[2000]
[3000]
[4000]
[5000] -fusion SPANNING read extraction for scaff: TLK2P1--AC110079.1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000] -fusion SPANNING read extraction for scaff: TVP23C--CDRT4
-filtered reads reasons: $VAR1 = {
'seq similar region alignment' => 89586,
'lacks exon overlap' => 760
};
EM: Starting log likelihood: -8115.593801
EM: Round [1] log likelihood: -8096.929598
EM: Round [2] log likelihood: -8084.777904
EM: Round [3] log likelihood: -8075.035148
EM: Round [4] log likelihood: -8066.873027
EM: Round [5] log likelihood: -8059.824554
EM: Round [6] log likelihood: -8053.615667
EM: Round [7] log likelihood: -8048.080028
EM: Round [8] log likelihood: -8043.110915
EM: Round [9] log likelihood: -8038.634447
EM: Round [10] log likelihood: -8034.595037
EM: Round [11] log likelihood: -8030.947633
EM: Round [12] log likelihood: -8027.653632
EM: Round [13] log likelihood: -8024.678774
EM: Round [14] log likelihood: -8021.992061
EM: Round [15] log likelihood: -8019.565218
EM: Round [16] log likelihood: -8017.372403
EM: Round [17] log likelihood: -8015.390035
EM: Round [18] log likelihood: -8013.596660
EM: Round [19] log likelihood: -8011.972833
EM: Round [20] log likelihood: -8010.500991
EM: Round [21] log likelihood: -8009.165327
EM: Round [22] log likelihood: -8007.951648
EM: Round [23] log likelihood: -8006.847247
EM: Round [24] log likelihood: -8005.840767
EM: Round [25] log likelihood: -8004.922075
EM: Round [26] log likelihood: -8004.082137
EM: Round [27] log likelihood: -8003.312907
EM: Round [28] log likelihood: -8002.607223
EM: Round [29] log likelihood: -8001.958710
EM: Round [30] log likelihood: -8001.361692
EM: Round [31] log likelihood: -8000.811117
EM: Round [32] log likelihood: -8000.302485
EM: Round [33] log likelihood: -7999.831783
EM: Round [34] log likelihood: -7999.395435
EM: Round [35] log likelihood: -7998.990246
EM: Round [36] log likelihood: -7998.613361
EM: Round [37] log likelihood: -7998.262227
EM: Round [38] log likelihood: -7997.934556
EM: Round [39] log likelihood: -7997.628298
EM: Round [40] log likelihood: -7997.341611
EM: Round [41] log likelihood: -7997.072839
EM: Round [42] log likelihood: -7996.820493
EM: Round [43] log likelihood: -7996.583229
EM: Round [44] log likelihood: -7996.359834
EM: Round [45] log likelihood: -7996.149210
EM: Round [46] log likelihood: -7995.950366
EM: Round [47] log likelihood: -7995.762401
EM: Round [48] log likelihood: -7995.584499
EM: Round [49] log likelihood: -7995.415914
EM: Round [50] log likelihood: -7995.255972
EM: Round [51] log likelihood: -7995.104055
EM: Round [52] log likelihood: -7994.959600
EM: Round [53] log likelihood: -7994.822091
EM: Round [54] log likelihood: -7994.691058
EM: Round [55] log likelihood: -7994.566066
EM: Round [56] log likelihood: -7994.446720
EM: Round [57] log likelihood: -7994.332655
EM: Round [58] log likelihood: -7994.223534
EM: Round [59] log likelihood: -7994.119048
EM: Round [60] log likelihood: -7994.018912
EM: Round [61] log likelihood: -7993.922862
EM: Round [62] log likelihood: -7993.830653
EM: Round [63] log likelihood: -7993.742060
EM: Round [64] log likelihood: -7993.656874
EM: Round [65] log likelihood: -7993.574900
EM: Round [66] log likelihood: -7993.495959
EM: Round [67] log likelihood: -7993.419881
EM: Round [68] log likelihood: -7993.346512
EM: Round [69] log likelihood: -7993.275706
EM: Round [70] log likelihood: -7993.207327
EM: Round [71] log likelihood: -7993.141249
EM: Round [72] log likelihood: -7993.077353
EM: Round [73] log likelihood: -7993.015529
EM: Round [74] log likelihood: -7992.955674
EM: Round [75] log likelihood: -7992.897691
EM: Round [76] log likelihood: -7992.841489
EM: Round [77] log likelihood: -7992.786983
EM: Round [78] log likelihood: -7992.734093
EM: Round [79] log likelihood: -7992.682744
EM: Round [80] log likelihood: -7992.632866
EM: Round [81] log likelihood: -7992.584392
EM: Round [82] log likelihood: -7992.537260
EM: Round [83] log likelihood: -7992.491410
EM: Round [84] log likelihood: -7992.446788
EM: Round [85] log likelihood: -7992.403341
EM: Round [86] log likelihood: -7992.361020
EM: Round [87] log likelihood: -7992.319778
EM: Round [88] log likelihood: -7992.279571
EM: Round [89] log likelihood: -7992.240357
EM: Round [90] log likelihood: -7992.202098
EM: Round [91] log likelihood: -7992.164755
EM: Round [92] log likelihood: -7992.128294
EM: Round [93] log likelihood: -7992.092680
EM: Round [94] log likelihood: -7992.057883
EM: Round [95] log likelihood: -7992.023871
EM: Round [96] log likelihood: -7991.990617
EM: Round [97] log likelihood: -7991.958093
EM: Round [98] log likelihood: -7991.926273
EM: Round [99] log likelihood: -7991.895134
EM: Round [100] log likelihood: -7991.864650
EM: Round [101] log likelihood: -7991.834801
EM: Round [102] log likelihood: -7991.805565
EM: Round [103] log likelihood: -7991.776922
EM: Round [104] log likelihood: -7991.748852
EM: Round [105] log likelihood: -7991.721338
EM: Round [106] log likelihood: -7991.694361
EM: Round [107] log likelihood: -7991.667905
EM: Round [108] log likelihood: -7991.641955
EM: Round [109] log likelihood: -7991.616494
EM: Round [110] log likelihood: -7991.591509
EM: Round [111] log likelihood: -7991.566985
EM: Round [112] log likelihood: -7991.542908
EM: Round [113] log likelihood: -7991.519267
EM: Round [114] log likelihood: -7991.496049
EM: Round [115] log likelihood: -7991.473241
EM: Round [116] log likelihood: -7991.450834
EM: Round [117] log likelihood: -7991.428815
EM: Round [118] log likelihood: -7991.407175
EM: Round [119] log likelihood: -7991.385904
EM: Round [120] log likelihood: -7991.364992
EM: Round [121] log likelihood: -7991.344430
EM: Round [122] log likelihood: -7991.324209
EM: Round [123] log likelihood: -7991.304320
EM: Round [124] log likelihood: -7991.284756
EM: Round [125] log likelihood: -7991.265508
EM: Round [126] log likelihood: -7991.246569
EM: Round [127] log likelihood: -7991.227932
EM: Round [128] log likelihood: -7991.209589
EM: Round [129] log likelihood: -7991.191533
EM: Round [130] log likelihood: -7991.173759
EM: Round [131] log likelihood: -7991.156259
EM: Round [132] log likelihood: -7991.139028
EM: Round [133] log likelihood: -7991.122060
EM: Round [134] log likelihood: -7991.105348
EM: Round [135] log likelihood: -7991.088888
EM: Round [136] log likelihood: -7991.072674
EM: Round [137] log likelihood: -7991.056700
EM: Round [138] log likelihood: -7991.040963
EM: Round [139] log likelihood: -7991.025456
EM: Round [140] log likelihood: -7991.010176
EM: Round [141] log likelihood: -7990.995117
EM: Round [142] log likelihood: -7990.980275
EM: Round [143] log likelihood: -7990.965646
EM: Round [144] log likelihood: -7990.951226
EM: Round [145] log likelihood: -7990.937011
EM: Round [146] log likelihood: -7990.922996
EM: Round [147] log likelihood: -7990.909179
EM: Round [148] log likelihood: -7990.895554
EM: Round [149] log likelihood: -7990.882119
EM: Round [150] log likelihood: -7990.868870
EM: Round [151] log likelihood: -7990.855804
EM: Round [152] log likelihood: -7990.842917
EM: Round [153] log likelihood: -7990.830206
EM: Round [154] log likelihood: -7990.817668
EM: Round [155] log likelihood: -7990.805300
EM: Round [156] log likelihood: -7990.793098
EM: Round [157] log likelihood: -7990.781061
EM: Round [158] log likelihood: -7990.769185
EM: Round [159] log likelihood: -7990.757467
EM: Round [160] log likelihood: -7990.745905
EM: Round [161] log likelihood: -7990.734495
EM: Round [162] log likelihood: -7990.723236
EM: Round [163] log likelihood: -7990.712125
EM: Round [164] log likelihood: -7990.701160
EM: Round [165] log likelihood: -7990.690337
EM: Round [166] log likelihood: -7990.679656
EM: Round [167] log likelihood: -7990.669112
EM: Round [168] log likelihood: -7990.658705
EM: Round [169] log likelihood: -7990.648432
EM: Round [170] log likelihood: -7990.638290
EM: Round [171] log likelihood: -7990.628279
EM: Round [172] log likelihood: -7990.618395
EM: Round [173] log likelihood: -7990.608637
EM: Round [174] log likelihood: -7990.599002
EM: Round [175] log likelihood: -7990.589490
EM: Round [176] log likelihood: -7990.580097
EM: Round [177] log likelihood: -7990.570823
EM: Round [178] log likelihood: -7990.561664
EM: Round [179] log likelihood: -7990.552621
EM: Round [180] log likelihood: -7990.543690
EM: Round [181] log likelihood: -7990.534870
EM: Round [182] log likelihood: -7990.526160
EM: Round [183] log likelihood: -7990.517558
EM: Round [184] log likelihood: -7990.509061
EM: Round [185] log likelihood: -7990.500670
EM: Round [186] log likelihood: -7990.492382
EM: Round [187] log likelihood: -7990.484195
EM: Round [188] log likelihood: -7990.476109
EM: Round [189] log likelihood: -7990.468121
EM: Round [190] log likelihood: -7990.460230
EM: Round [191] log likelihood: -7990.452436
EM: Round [192] log likelihood: -7990.444736
EM: Round [193] log likelihood: -7990.437129
EM: Round [194] log likelihood: -7990.429614
EM: Round [195] log likelihood: -7990.422190
EM: Round [196] log likelihood: -7990.414855
EM: Round [197] log likelihood: -7990.407608
EM: Round [198] log likelihood: -7990.400448
EM: Round [199] log likelihood: -7990.393373
EM: Round [200] log likelihood: -7990.386383
EM: Round [201] log likelihood: -7990.379476
EM: Round [202] log likelihood: -7990.372651
EM: Round [203] log likelihood: -7990.365908
EM: Round [204] log likelihood: -7990.359244
EM: Round [205] log likelihood: -7990.352659
EM: Round [206] log likelihood: -7990.346152
EM: Round [207] log likelihood: -7990.339721
EM: Round [208] log likelihood: -7990.333366
EM: Round [209] log likelihood: -7990.327086
EM: Round [210] log likelihood: -7990.320879
EM: Round [211] log likelihood: -7990.314745
EM: Round [212] log likelihood: -7990.308683
EM: Round [213] log likelihood: -7990.302691
EM: Round [214] log likelihood: -7990.296769
EM: Round [215] log likelihood: -7990.290916
EM: Round [216] log likelihood: -7990.285131
EM: Round [217] log likelihood: -7990.279414
EM: Round [218] log likelihood: -7990.273762
EM: Round [219] log likelihood: -7990.268176
EM: Round [220] log likelihood: -7990.262654
EM: Round [221] log likelihood: -7990.257196
EM: Round [222] log likelihood: -7990.251800
EM: Round [223] log likelihood: -7990.246467
EM: Round [224] log likelihood: -7990.241195
EM: Round [225] log likelihood: -7990.235983
EM: Round [226] log likelihood: -7990.230831
EM: Round [227] log likelihood: -7990.225738
EM: Round [228] log likelihood: -7990.220703
EM: Round [229] log likelihood: -7990.215726
EM: Round [230] log likelihood: -7990.210805
EM: Round [231] log likelihood: -7990.205940
EM: Round [232] log likelihood: -7990.201130
EM: Round [233] log likelihood: -7990.196375
EM: Round [234] log likelihood: -7990.191674
EM: Round [235] log likelihood: -7990.187026
EM: Round [236] log likelihood: -7990.182431
EM: Round [237] log likelihood: -7990.177887
EM: Round [238] log likelihood: -7990.173395
EM: Round [239] log likelihood: -7990.168953
EM: Round [240] log likelihood: -7990.164561
EM: Round [241] log likelihood: -7990.160219
EM: Round [242] log likelihood: -7990.155925
EM: Round [243] log likelihood: -7990.151679
EM: Round [244] log likelihood: -7990.147481
EM: Round [245] log likelihood: -7990.143330
EM: Round [246] log likelihood: -7990.139226
EM: Round [247] log likelihood: -7990.135167
EM: Round [248] log likelihood: -7990.131153
EM: Round [249] log likelihood: -7990.127184
EM: Round [250] log likelihood: -7990.123259
EM: Round [251] log likelihood: -7990.119378
EM: Round [252] log likelihood: -7990.115540
EM: Round [253] log likelihood: -7990.111745
EM: Round [254] log likelihood: -7990.107991
EM: Round [255] log likelihood: -7990.104280
EM: Round [256] log likelihood: -7990.100609
EM: Round [257] log likelihood: -7990.096978
EM: Round [258] log likelihood: -7990.093388
EM: Round [259] log likelihood: -7990.089838
EM: Round [260] log likelihood: -7990.086326
EM: Round [261] log likelihood: -7990.082853
EM: Round [262] log likelihood: -7990.079419
EM: Round [263] log likelihood: -7990.076022
EM: Round [264] log likelihood: -7990.072662
EM: Round [265] log likelihood: -7990.069340
EM: Round [266] log likelihood: -7990.066053
EM: Round [267] log likelihood: -7990.062803
EM: Round [268] log likelihood: -7990.059588
EM: Round [269] log likelihood: -7990.056409
EM: Round [270] log likelihood: -7990.053264
EM: Round [271] log likelihood: -7990.050153
EM: Round [272] log likelihood: -7990.047076
EM: Round [273] log likelihood: -7990.044033
EM: Round [274] log likelihood: -7990.041023
EM: Round [275] log likelihood: -7990.038046
EM: Round [276] log likelihood: -7990.035101
EM: Round [277] log likelihood: -7990.032188
EM: Round [278] log likelihood: -7990.029307
EM: Round [279] log likelihood: -7990.026456
EM: Round [280] log likelihood: -7990.023637
EM: Round [281] log likelihood: -7990.020848
EM: Round [282] log likelihood: -7990.018090
EM: Round [283] log likelihood: -7990.015361
EM: Round [284] log likelihood: -7990.012662
EM: Round [285] log likelihood: -7990.009992
EM: Round [286] log likelihood: -7990.007350
EM: Round [287] log likelihood: -7990.004738
EM: Round [288] log likelihood: -7990.002153
EM: Round [289] log likelihood: -7989.999596
EM: Round [290] log likelihood: -7989.997067
EM: Round [291] log likelihood: -7989.994564
EM: Round [292] log likelihood: -7989.992089
EM: Round [293] log likelihood: -7989.989640
EM: Round [294] log likelihood: -7989.987218
EM: Round [295] log likelihood: -7989.984821
EM: Round [296] log likelihood: -7989.982450
EM: Round [297] log likelihood: -7989.980105
EM: Round [298] log likelihood: -7989.977785
EM: Round [299] log likelihood: -7989.975489
EM: Round [300] log likelihood: -7989.973218
EM: Round [301] log likelihood: -7989.970971
EM: Round [302] log likelihood: -7989.968749
EM: Round [303] log likelihood: -7989.966549
EM: Round [304] log likelihood: -7989.964374
EM: Round [305] log likelihood: -7989.962221
EM: Round [306] log likelihood: -7989.960092
EM: Round [307] log likelihood: -7989.957985
EM: Round [308] log likelihood: -7989.955901
EM: Round [309] log likelihood: -7989.953838
EM: Round [310] log likelihood: -7989.951798
EM: Round [311] log likelihood: -7989.949779
EM: Round [312] log likelihood: -7989.947782
EM: Round [313] log likelihood: -7989.945806
EM: Round [314] log likelihood: -7989.943850
EM: Round [315] log likelihood: -7989.941916
EM: Round [316] log likelihood: -7989.940002
EM: Round [317] log likelihood: -7989.938108
EM: Round [318] log likelihood: -7989.936235
EM: Round [319] log likelihood: -7989.934381
EM: Round [320] log likelihood: -7989.932546
EM: Round [321] log likelihood: -7989.930731
EM: Round [322] log likelihood: -7989.928936
EM: Round [323] log likelihood: -7989.927159
EM: Round [324] log likelihood: -7989.925401
EM: Round [325] log likelihood: -7989.923661
EM: Round [326] log likelihood: -7989.921940
EM: Round [327] log likelihood: -7989.920237
EM: Round [328] log likelihood: -7989.918552
EM: Round [329] log likelihood: -7989.916884
EM: Round [330] log likelihood: -7989.915234
EM: Round [331] log likelihood: -7989.913602
EM: Round [332] log likelihood: -7989.911986
EM: Round [333] log likelihood: -7989.910388
EM: Round [334] log likelihood: -7989.908806
EM: Round [335] log likelihood: -7989.907241
EM: Round [336] log likelihood: -7989.905692
EM: Round [337] log likelihood: -7989.904160
EM: Round [338] log likelihood: -7989.902643
EM: Round [339] log likelihood: -7989.901143
EM: Round [340] log likelihood: -7989.899658
EM: Round [341] log likelihood: -7989.898189
EM: Round [342] log likelihood: -7989.896735
EM: Round [343] log likelihood: -7989.895296
EM: Round [344] log likelihood: -7989.893872
EM: Round [345] log likelihood: -7989.892464
EM: Round [346] log likelihood: -7989.891070
EM: Round [347] log likelihood: -7989.889690
EM: Round [348] log likelihood: -7989.888325
EM: Round [349] log likelihood: -7989.886974
EM: Round [350] log likelihood: -7989.885637
EM: Round [351] log likelihood: -7989.884314
EM: Round [352] log likelihood: -7989.883005
EM: Round [353] log likelihood: -7989.881710
EM: Round [354] log likelihood: -7989.880428
EM: Round [355] log likelihood: -7989.879159
EM: Round [356] log likelihood: -7989.877904
EM: Round [357] log likelihood: -7989.876661
EM: Round [358] log likelihood: -7989.875432
EM: Round [359] log likelihood: -7989.874215
EM: Round [360] log likelihood: -7989.873011
EM: Round [361] log likelihood: -7989.871820
EM: Round [362] log likelihood: -7989.870640
EM: Round [363] log likelihood: -7989.869473
EM: Round [364] log likelihood: -7989.868319
EM: Round [365] log likelihood: -7989.867176
EM: Round [366] log likelihood: -7989.866045
EM: Round [367] log likelihood: -7989.864925
EM: Round [368] log likelihood: -7989.863818
EM: Round [369] log likelihood: -7989.862721
EM: Round [370] log likelihood: -7989.861637
EM: Round [371] log likelihood: -7989.860563
EM: Round [372] log likelihood: -7989.859500
EM: Round [373] log likelihood: -7989.858449
EM: Round [374] log likelihood: -7989.857408
EM: Round [375] log likelihood: -7989.856378
EM: Round [376] log likelihood: -7989.855359
EM: Round [377] log likelihood: -7989.854350
EM: Round [378] log likelihood: -7989.853352
EM: Round [379] log likelihood: -7989.852364
EM: Round [380] log likelihood: -7989.851386
EM: Round [381] log likelihood: -7989.850418
EM: Round [382] log likelihood: -7989.849460
EM: Round [383] log likelihood: -7989.848513
EM: Round [384] log likelihood: -7989.847574
EM: Round [385] log likelihood: -7989.846646
EM: Round [386] log likelihood: -7989.845727
EM: Round [387] log likelihood: -7989.844818
EM: Round [388] log likelihood: -7989.843918
EM: Round [389] log likelihood: -7989.843027
EM: Round [390] log likelihood: -7989.842145
EM: Round [391] log likelihood: -7989.841273
EM: Round [392] log likelihood: -7989.840409
EM: Round [393] log likelihood: -7989.839555
EM: Round [394] log likelihood: -7989.838709
EM: Round [395] log likelihood: -7989.837871
EM: Round [396] log likelihood: -7989.837043
EM: Round [397] log likelihood: -7989.836223
EM: Round [398] log likelihood: -7989.835411
EM: Round [399] log likelihood: -7989.834608
EM: Round [400] log likelihood: -7989.833813
EM: Round [401] log likelihood: -7989.833026
EM: Round [402] log likelihood: -7989.832247
EM: Round [403] log likelihood: -7989.831476
EM: Round [404] log likelihood: -7989.830713
EM: Round [405] log likelihood: -7989.829958
EM: Round [406] log likelihood: -7989.829211
EM: Round [407] log likelihood: -7989.828471
EM: Round [408] log likelihood: -7989.827739
EM: Round [409] log likelihood: -7989.827014
EM: Round [410] log likelihood: -7989.826297
EM: Round [411] log likelihood: -7989.825587
EM: Round [412] log likelihood: -7989.824884
EM: Round [413] log likelihood: -7989.824189
EM: Round [414] log likelihood: -7989.823501
EM: Round [415] log likelihood: -7989.822819
EM: Round [416] log likelihood: -7989.822145
EM: Round [417] log likelihood: -7989.821478
EM: Round [418] log likelihood: -7989.820817
EM: Round [419] log likelihood: -7989.820163
EM: Round [420] log likelihood: -7989.819516
EM: Round [421] log likelihood: -7989.818876
EM: Round [422] log likelihood: -7989.818242
EM: Round [423] log likelihood: -7989.817614
EM: Round [424] log likelihood: -7989.816993
EM: Round [425] log likelihood: -7989.816378
EM: Round [426] log likelihood: -7989.815770
EM: Round [427] log likelihood: -7989.815167
EM: Round [428] log likelihood: -7989.814571
EM: Round [429] log likelihood: -7989.813981
EM: Round [430] log likelihood: -7989.813397
EM: Round [431] log likelihood: -7989.812819
EM: Round [432] log likelihood: -7989.812247
EM: Round [433] log likelihood: -7989.811680
EM: Round [434] log likelihood: -7989.811120
EM: Round [435] log likelihood: -7989.810565
EM: Round [436] log likelihood: -7989.810016
EM: Round [437] log likelihood: -7989.809472
EM: Round [438] log likelihood: -7989.808934
EM: Round [439] log likelihood: -7989.808401
EM: Round [440] log likelihood: -7989.807874
EM: Round [441] log likelihood: -7989.807352
EM: Round [442] log likelihood: -7989.806836
EM: Round [443] log likelihood: -7989.806324
EM: Round [444] log likelihood: -7989.805818
EM: Round [445] log likelihood: -7989.805317
EM: Round [446] log likelihood: -7989.804822
EM: Round [447] log likelihood: -7989.804331
EM: Round [448] log likelihood: -7989.803845
EM: Round [449] log likelihood: -7989.803364
EM: Round [450] log likelihood: -7989.802888
EM: Round [451] log likelihood: -7989.802417
EM: Round [452] log likelihood: -7989.801951
EM: Round [453] log likelihood: -7989.801489
EM: Round [454] log likelihood: -7989.801032
EM: Round [455] log likelihood: -7989.800580
EM: Round [456] log likelihood: -7989.800132
EM: Round [457] log likelihood: -7989.799689
EM: Round [458] log likelihood: -7989.799250
EM: Round [459] log likelihood: -7989.798816
EM: Round [460] log likelihood: -7989.798386
EM: Round [461] log likelihood: -7989.797961
EM: Round [462] log likelihood: -7989.797539
EM: Round [463] log likelihood: -7989.797123
EM: Round [464] log likelihood: -7989.796710
EM: Round [465] log likelihood: -7989.796301
EM: Round [466] log likelihood: -7989.795897
EM: Round [467] log likelihood: -7989.795497
EM: Round [468] log likelihood: -7989.795101
EM: Round [469] log likelihood: -7989.794709
EM: Round [470] log likelihood: -7989.794320
EM: Round [471] log likelihood: -7989.793936
EM: Round [472] log likelihood: -7989.793556
EM: Round [473] log likelihood: -7989.793179
EM: Round [474] log likelihood: -7989.792807
EM: Round [475] log likelihood: -7989.792438
EM: Round [476] log likelihood: -7989.792072
EM: Round [477] log likelihood: -7989.791711
EM: Round [478] log likelihood: -7989.791353
EM: Round [479] log likelihood: -7989.790999
EM: Round [480] log likelihood: -7989.790648
EM: Round [481] log likelihood: -7989.790301
EM: Round [482] log likelihood: -7989.789957
EM: Round [483] log likelihood: -7989.789617
EM: Round [484] log likelihood: -7989.789281
EM: Round [485] log likelihood: -7989.788947
EM: Round [486] log likelihood: -7989.788617
EM: Round [487] log likelihood: -7989.788291
EM: Round [488] log likelihood: -7989.787968
EM: Round [489] log likelihood: -7989.787648
EM: Round [490] log likelihood: -7989.787331
EM: Round [491] log likelihood: -7989.787017
EM: Round [492] log likelihood: -7989.786707
EM: Round [493] log likelihood: -7989.786399
EM: Round [494] log likelihood: -7989.786095
EM: Round [495] log likelihood: -7989.785794
EM: Round [496] log likelihood: -7989.785496
EM: Round [497] log likelihood: -7989.785201
EM: Round [498] log likelihood: -7989.784909
EM: Round [499] log likelihood: -7989.784620
EM: Round [500] log likelihood: -7989.784334
EM: Round [501] log likelihood: -7989.784050
EM: Round [502] log likelihood: -7989.783770
EM: Round [503] log likelihood: -7989.783492
EM: Round [504] log likelihood: -7989.783217
EM: Round [505] log likelihood: -7989.782945
EM: Round [506] log likelihood: -7989.782676
EM: Round [507] log likelihood: -7989.782409
EM: Round [508] log likelihood: -7989.782145
EM: Round [509] log likelihood: -7989.781884
EM: Round [510] log likelihood: -7989.781625
EM: Round [511] log likelihood: -7989.781369
EM: Round [512] log likelihood: -7989.781116
EM: Round [513] log likelihood: -7989.780865
EM: Round [514] log likelihood: -7989.780616
EM: Round [515] log likelihood: -7989.780370
EM: Round [516] log likelihood: -7989.780127
EM: Round [517] log likelihood: -7989.779886
EM: Round [518] log likelihood: -7989.779647
EM: Round [519] log likelihood: -7989.779411
EM: Round [520] log likelihood: -7989.779177
EM: Round [521] log likelihood: -7989.778946
EM: Round [522] log likelihood: -7989.778717
EM: Round [523] log likelihood: -7989.778490
EM: Round [524] log likelihood: -7989.778266
EM: Round [525] log likelihood: -7989.778043
EM: Round [526] log likelihood: -7989.777823
EM: Round [527] log likelihood: -7989.777606
EM: Round [528] log likelihood: -7989.777390
EM: Round [529] log likelihood: -7989.777176
EM: Round [530] log likelihood: -7989.776965
EM: Round [531] log likelihood: -7989.776756
EM: Round [532] log likelihood: -7989.776549
EM: Round [533] log likelihood: -7989.776344
EM: Round [534] log likelihood: -7989.776141
EM: Round [535] log likelihood: -7989.775940
EM: Round [536] log likelihood: -7989.775741
EM: Round [537] log likelihood: -7989.775544
EM: Round [538] log likelihood: -7989.775349
EM: Round [539] log likelihood: -7989.775156
EM: Round [540] log likelihood: -7989.774965
EM: Round [541] log likelihood: -7989.774776
EM: Round [542] log likelihood: -7989.774589
EM: Round [543] log likelihood: -7989.774404
EM: Round [544] log likelihood: -7989.774220
EM: Round [545] log likelihood: -7989.774039
EM: Round [546] log likelihood: -7989.773859
EM: Round [547] log likelihood: -7989.773681
EM: Round [548] log likelihood: -7989.773504
EM: Round [549] log likelihood: -7989.773330
EM: Round [550] log likelihood: -7989.773157
EM: Round [551] log likelihood: -7989.772986
EM: Round [552] log likelihood: -7989.772817
EM: Round [553] log likelihood: -7989.772649
EM: Round [554] log likelihood: -7989.772484
EM: Round [555] log likelihood: -7989.772319
EM: Round [556] log likelihood: -7989.772157
EM: Round [557] log likelihood: -7989.771996
EM: Round [558] log likelihood: -7989.771836
EM: Round [559] log likelihood: -7989.771679
EM: Round [560] log likelihood: -7989.771522
EM: Round [561] log likelihood: -7989.771368
EM: Round [562] log likelihood: -7989.771215
EM: Round [563] log likelihood: -7989.771063
EM: Round [564] log likelihood: -7989.770913
EM: Round [565] log likelihood: -7989.770765
EM: Round [566] log likelihood: -7989.770618
EM: Round [567] log likelihood: -7989.770472
EM: Round [568] log likelihood: -7989.770328
EM: Round [569] log likelihood: -7989.770185
EM: Round [570] log likelihood: -7989.770044
EM: Round [571] log likelihood: -7989.769904
EM: Round [572] log likelihood: -7989.769766
EM: Round [573] log likelihood: -7989.769629
EM: Round [574] log likelihood: -7989.769493
EM: Round [575] log likelihood: -7989.769359
EM: Round [576] log likelihood: -7989.769226
EM: Round [577] log likelihood: -7989.769094
EM: Round [578] log likelihood: -7989.768964
EM: Round [579] log likelihood: -7989.768835
EM: Round [580] log likelihood: -7989.768707
EM: Round [581] log likelihood: -7989.768581
EM: Round [582] log likelihood: -7989.768455
EM: Round [583] log likelihood: -7989.768332
EM: Round [584] log likelihood: -7989.768209
EM: Round [585] log likelihood: -7989.768087
EM: Round [586] log likelihood: -7989.767967
EM: Round [587] log likelihood: -7989.767848
EM: Round [588] log likelihood: -7989.767730
EM: Round [589] log likelihood: -7989.767613
EM: Round [590] log likelihood: -7989.767498
EM: Round [591] log likelihood: -7989.767383
EM: Round [592] log likelihood: -7989.767270
EM: Round [593] log likelihood: -7989.767158
EM: Round [594] log likelihood: -7989.767047
EM: Round [595] log likelihood: -7989.766937
EM: Round [596] log likelihood: -7989.766828
EM: Round [597] log likelihood: -7989.766721
EM: Round [598] log likelihood: -7989.766614
EM: Round [599] log likelihood: -7989.766508
EM: Round [600] log likelihood: -7989.766404
EM: Round [601] log likelihood: -7989.766300
EM: Round [602] log likelihood: -7989.766198
EM: Round [603] log likelihood: -7989.766096
EM: Round [604] log likelihood: -7989.765996
EM: Round [605] log likelihood: -7989.765897
EM: Stopping iterations at round 605 due to insufficient improvement in likelihood.
[bam_sort_core] merging from 0 files and 8 in-memory blocks...
-extracting read coordinates from /tmp/nxf.ILSmsIZhgf/tih_rna_sample_00616_B23MVV7LT4_1.consolidated.bam into /tmp/nxf.ILSmsIZhgf/tih_rna_sample_00616_B23MVV7LT4_1.consolidated.bam.read_coords
CMD: touch /tmp/nxf.ILSmsIZhgf/tih_rna_sample_00616_B23MVV7LT4_1.consolidated.bam.read_coords.ok
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k2,2 -k4,4n /tmp/nxf.ILSmsIZhgf/tih_rna_sample_00616_B23MVV7LT4_1.consolidated.bam.read_coords > /tmp/nxf.ILSmsIZhgf/tih_rna_sample_00616_B23MVV7LT4_1.consolidated.bam.read_coords.sort_by_readname
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k3,3n /tmp/nxf.ILSmsIZhgf/tih_rna_sample_00616_B23MVV7LT4_1.consolidated.bam.frag_coords > /tmp/nxf.ILSmsIZhgf/tih_rna_sample_00616_B23MVV7LT4_1.consolidated.bam.frag_coords.coord_sorted
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.ILSmsIZhgf/fi_workdir/tih_rna_sample_00616_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --genome_lib_dir ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.ILSmsIZhgf/fi_workdir/tih_rna_sample_00616_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter --genome_lib_dir ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 50
CMD: cp /tmp/nxf.ILSmsIZhgf/fi_workdir/tih_rna_sample_00616_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter.post_promisc_filter /tmp/nxf.ILSmsIZhgf/tih_rna_sample_00616_B23MVV7LT4_1.post_blast_and_promiscuity_filter
-done, see /tmp/nxf.ILSmsIZhgf/tih_rna_sample_00616_B23MVV7LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass
EM: Starting log likelihood: -3894.504324
EM: Round [1] log likelihood: -3894.387567
EM: Round [2] log likelihood: -3894.387455
EM: Round [3] log likelihood: -3894.387455
EM: Stopping iterations at round 3 due to insufficient improvement in likelihood.
-total frags in /tmp/nxf.ILSmsIZhgf/tih_rna_sample_00616_B23MVV7LT4_1_1.fastp.fastq.gz: 296476201
Warning - not locating file: /tmp/nxf.ILSmsIZhgf/tih_rna_sample_00616_B23MVV7LT4_1.gmap_trinity_GG.fusions.gff3.bed
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000280136.2]
WARNING, no entry stored in dbm for [ENSG00000226049.3]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [ENSG00000158482.10]
WARNING, no entry stored in dbm for [ENSG00000275654.1]
WARNING, no entry stored in dbm for [ENSG00000286030.2]
WARNING, no entry stored in dbm for [ENSG00000286030.2]
WARNING, no entry stored in dbm for [ENSG00000286065.2]
WARNING, no entry stored in dbm for [ENSG00000286030.2]
ls: cannot access 'IGV_inputs': No such file or directory