File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/3b6247159c0aa1cf8ac984e95e7659/.command.log
Size
1.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (tih_rna_sample_00581_B23MVV7LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/e88fd7fc7045f143707b3a331bf8bc/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/3b6247159c0aa1cf8ac984e95e7659/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/08bf324c3cf25aebafe8407e410b94/tih_rna_sample_00581_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/bee10aa702195de1e8c3898ba03a5a/tih_rna_sample_00581_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/3b6247159c0aa1cf8ac984e95e7659/.command.run
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 287643786
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00581_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	287643786
Known Splicing Events:	283668748
Partial Novel Splicing Events:	1805766
Novel Splicing Events:	2074812
Filtered Splicing Events:	94460

Total splicing  Junctions:	398830
Known Splicing Junctions:	235072
Partial Novel Splicing Junctions:	101723
Novel Splicing Junctions:	62035

===================================================================
Create BED file ...
Create Interact file ...