Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/06642aa04ce6648b0a6a4bed048f67/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/3d69f286743fc925a3e0acd1cf500f/tih_rna_sample_00575_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/06642aa04ce6648b0a6a4bed048f67/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
Processed 1000000 records
Processed 2000000 records
Processed 3000000 records
Processed 4000000 records
Processed 5000000 records
Processed 6000000 records
Processed 7000000 records
Processed 8000000 records
Processed 9000000 records
Processed 10000000 records
Processed 11000000 records
Processed 12000000 records
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Processed 14000000 records
Processed 15000000 records
Processed 16000000 records
Processed 17000000 records
Processed 18000000 records
Processed 19000000 records
Processed 20000000 records
Processed 21000000 records
Processed 22000000 records
Processed 23000000 records
Processed 24000000 records
Processed 25000000 records
Processed 26000000 records
Processed 27000000 records
Processed 28000000 records
Processed 29000000 records
Processed 30000000 records
Processed 31000000 records
Processed 32000000 records
Processed 33000000 records
Processed 34000000 records
Processed 35000000 records
Processed 36000000 records
Processed 37000000 records
Processed 38000000 records
Processed 39000000 records
Processed 40000000 records
Processed 41000000 records
Processed 42000000 records
Processed 43000000 records
Processed 44000000 records
Processed 45000000 records
Processed 46000000 records
Processed 47000000 records
Processed 48000000 records
Processed 49000000 records
Processed 50000000 records
Processed 51000000 records
Processed 52000000 records
Processed 53000000 records
Processed 54000000 records
Processed 55000000 records
Processed 56000000 records
Processed 57000000 records
Processed 58000000 records
Processed 59000000 records
Processed 60000000 records
Processed 61000000 records
Processed 62000000 records
Processed 63000000 records
Processed 64000000 records
Processed 65000000 records
Processed 66000000 records
Processed 67000000 records
Processed 68000000 records
Processed 69000000 records
Processed 70000000 records
Processed 71000000 records
Processed 72000000 records
Processed 73000000 records
Processed 74000000 records
Processed 75000000 records
Processed 76000000 records
Processed 77000000 records
Processed 78000000 records
Processed 79000000 records
Processed 80000000 records
Processed 81000000 records
Processed 82000000 records
Processed 83000000 records
Processed 84000000 records
Processed 85000000 records
Processed 86000000 records
Processed 87000000 records
Processed 88000000 records
Processed 89000000 records
Processed 90000000 records
Processed 91000000 records
Processed 92000000 records
Processed 93000000 records
Processed 94000000 records
Processed 95000000 records
Processed 96000000 records
Processed 97000000 records
Processed 98000000 records
Processed 99000000 records
Processed 100000000 records
Processed 101000000 records
Processed 102000000 records
Processed 103000000 records
Processed 104000000 records
Processed 105000000 records
Processed 106000000 records
Processed 107000000 records
Processed 108000000 records
Processed 109000000 records
Processed 110000000 records
Processed 111000000 records
Processed 112000000 records
Processed 113000000 records
Processed 114000000 records
Processed 115000000 records
Processed 116000000 records
Processed 117000000 records
Processed 118000000 records
Processed 119000000 records
Processed 120000000 records
Processed 121000000 records
Processed 122000000 records
Processed 123000000 records
Processed 124000000 records
Processed 125000000 records
Processed 126000000 records
Processed 127000000 records
Processed 128000000 records
Processed 129000000 records
Processed 130000000 records
Processed 131000000 records
Processed 132000000 records
Processed 133000000 records
Processed 134000000 records
Processed 135000000 records
Processed 136000000 records
Processed 137000000 records
Processed 138000000 records
Processed 139000000 records
Processed 140000000 records
Processed 141000000 records
Processed 142000000 records
Processed 143000000 records
Processed 144000000 records
Processed 145000000 records
Processed 146000000 records
Processed 147000000 records
Processed 148000000 records
Processed 149000000 records
Processed 150000000 records
Processed 151000000 records
Processed 152000000 records
Processed 153000000 records
paired = 75727019
unpaired = 1756142
MERGED PAIRED END READS = 75727019
MATES PROCESSED = 153210180
TOTAL READS     = 77483161
DISTINCT READS  = 1.41401e+07
DISTINCT COUNTS = 1060
MAX COUNT       = 280353
COUNTS OF 1     = 3.44258e+06
MAX TERMS       = 100
OBSERVED COUNTS (280354)
1	3442577
2	2035425
3	1606354
4	1320583
5	1086097
6	887225
7	717660
8	577133
9	462185
10	369928
11	294432
12	233884
13	186720
14	149279
15	120214
16	96611
17	78820
18	64047
19	52528
20	43326
21	36181
22	30782
23	25585
24	21902
25	18728
26	16164
27	13819
28	12348
29	10623
30	9352
31	8310
32	7293
33	6656
34	5840
35	5238
36	4603
37	4300
38	4027
39	3586
40	3187
41	3023
42	2779
43	2528
44	2253
45	2201
46	2008
47	1874
48	1644
49	1647
50	1498
51	1415
52	1306
53	1333
54	1247
55	1161
56	1151
57	1082
58	1026
59	915
60	899
61	878
62	833
63	827
64	753
65	751
66	678
67	695
68	618
69	612
70	605
71	610
72	558
73	507
74	527
75	482
76	486
77	487
78	422
79	422
80	435
81	395
82	405
83	373
84	381
85	337
86	344
87	363
88	323
89	293
90	337
91	284
92	339
93	260
94	280
95	272
96	276
97	228
98	251
99	233
100	232
101	218
102	213
103	223
104	221
105	202
106	206
107	169
108	186
109	192
110	169
111	171
112	179
113	179
114	188
115	170
116	193
117	176
118	149
119	152
120	170
121	139
122	144
123	141
124	121
125	131
126	133
127	128
128	125
129	136
130	112
131	137
132	100
133	120
134	130
135	94
136	118
137	121
138	125
139	101
140	112
141	116
142	90
143	94
144	98
145	96
146	96
147	80
148	84
149	75
150	81
151	90
152	81
153	80
154	87
155	80
156	78
157	67
158	88
159	70
160	64
161	86
162	56
163	63
164	83
165	72
166	62
167	62
168	77
169	55
170	67
171	80
172	59
173	66
174	58
175	61
176	60
177	53
178	48
179	55
180	43
181	45
182	53
183	57
184	52
185	60
186	43
187	43
188	64
189	39
190	50
191	39
192	43
193	46
194	37
195	41
196	40
197	52
198	38
199	39
200	46
201	42
202	51
203	38
204	32
205	48
206	43
207	33
208	42
209	39
210	41
211	43
212	25
213	34
214	37
215	25
216	27
217	41
218	37
219	39
220	34
221	35
222	25
223	35
224	25
225	21
226	33
227	39
228	24
229	39
230	33
231	24
232	18
233	26
234	36
235	25
236	29
237	27
238	23
239	24
240	30
241	23
242	21
243	24
244	28
245	17
246	29
247	29
248	27
249	12
250	26
251	26
252	22
253	25
254	20
255	19
256	25
257	24
258	19
259	23
260	21
261	19
262	26
263	26
264	24
265	21
266	21
267	18
268	21
269	27
270	15
271	21
272	24
273	27
274	15
275	24
276	16
277	25
278	19
279	18
280	13
281	13
282	16
283	25
284	15
285	15
286	14
287	21
288	16
289	15
290	16
291	20
292	22
293	11
294	14
295	23
296	11
297	27
298	13
299	18
300	15
301	16
302	13
303	14
304	15
305	22
306	14
307	11
308	12
309	17
310	11
311	11
312	10
313	9
314	12
315	15
316	9
317	19
318	19
319	11
320	11
321	13
322	11
323	14
324	12
325	12
326	12
327	7
328	8
329	11
330	6
331	11
332	12
333	11
334	10
335	11
336	10
337	10
338	9
339	8
340	13
341	21
342	11
343	9
344	13
345	11
346	6
347	13
348	5
349	6
350	8
351	9
352	9
353	10
354	7
355	10
356	6
357	4
358	12
359	8
360	13
361	9
362	5
363	8
364	14
365	9
366	5
367	7
368	7
369	9
370	6
371	13
372	9
373	9
374	11
375	8
376	8
377	8
378	8
379	5
380	9
381	4
382	8
383	9
384	6
385	7
386	7
387	9
388	3
389	10
390	13
391	3
392	9
393	6
394	8
395	7
396	7
397	3
398	13
399	10
400	8
401	5
402	11
403	6
404	7
405	9
406	6
407	7
408	7
409	10
410	8
411	12
412	7
413	4
414	7
415	12
416	2
417	4
418	9
419	2
420	4
421	5
422	10
423	10
424	4
425	6
426	5
427	8
428	10
429	6
430	3
431	3
432	2
433	8
434	1
435	7
436	2
437	9
438	4
439	7
440	10
441	2
442	5
443	4
444	5
445	4
446	3
447	6
448	6
449	7
450	7
451	4
452	3
453	5
454	6
455	3
456	4
457	4
458	4
459	7
460	9
461	2
462	4
463	4
464	1
465	5
466	4
467	10
468	4
469	5
470	6
471	4
472	5
473	7
474	5
475	4
476	4
477	5
478	5
479	3
480	1
481	3
482	5
483	8
484	7
485	1
486	3
487	5
488	1
489	4
490	5
491	4
492	3
493	1
494	7
495	4
496	3
497	5
498	4
499	2
500	2
501	4
502	5
503	1
504	6
505	3
506	5
507	3
508	5
509	2
510	4
511	3
512	4
513	8
514	5
515	3
516	2
517	1
518	4
519	6
520	1
521	2
522	4
523	5
524	4
525	3
526	8
527	6
528	7
529	2
530	5
531	3
532	2
533	7
534	6
535	2
536	3
537	1
538	2
539	2
540	2
541	3
542	3
544	6
545	1
546	8
547	2
548	5
549	4
550	2
551	6
552	5
553	3
554	2
555	5
556	2
557	2
558	6
559	1
560	4
561	3
562	3
563	7
564	4
565	2
566	4
567	4
568	4
569	4
570	2
571	7
572	3
573	2
574	5
575	1
578	1
579	4
580	3
581	1
582	3
583	2
584	2
585	1
586	2
587	3
588	1
589	3
590	7
591	4
592	3
593	2
594	2
595	1
596	2
597	1
598	5
599	3
600	4
601	4
602	4
604	1
605	2
606	6
608	2
609	2
610	2
612	2
613	1
614	1
616	2
617	3
619	1
621	3
623	2
624	2
625	1
628	3
629	3
630	4
631	3
632	5
633	1
634	1
635	2
636	1
637	1
638	1
639	3
640	2
641	2
642	2
643	4
644	2
646	3
647	1
648	1
650	3
651	2
652	5
653	5
654	1
655	1
656	2
657	1
658	2
659	2
662	1
663	2
664	3
665	2
666	2
668	3
669	1
670	1
672	2
673	1
674	1
675	1
676	2
677	1
678	1
680	2
681	3
682	2
683	1
685	3
687	2
688	2
689	3
690	2
691	1
693	2
694	1
695	1
696	2
697	1
698	4
699	3
700	3
703	2
704	1
706	2
707	2
708	1
709	2
710	3
711	3
712	2
713	1
714	1
715	3
718	1
719	1
720	2
721	2
722	2
724	7
725	4
727	3
729	4
730	1
731	1
732	1
733	2
735	1
739	2
740	1
741	2
742	1
744	2
745	1
746	1
748	1
749	1
751	1
753	1
754	3
755	2
758	1
759	2
761	3
762	1
765	1
766	1
767	1
769	1
772	3
774	2
776	2
781	1
782	2
792	1
794	1
795	2
797	1
798	1
800	1
802	1
803	1
804	3
805	1
806	2
809	1
810	4
813	1
816	4
818	2
819	1
822	1
823	1
824	1
825	1
826	1
829	4
834	1
835	1
836	2
840	1
841	1
842	1
843	1
848	1
850	2
851	1
853	2
854	1
855	1
856	1
857	1
860	2
861	1
862	1
865	1
866	1
867	1
868	1
872	1
874	1
876	1
878	2
879	2
880	1
881	1
882	2
884	1
886	1
889	1
890	1
891	1
892	1
896	2
898	2
899	1
901	1
902	2
903	1
906	4
909	2
911	2
912	1
914	1
917	1
919	1
922	1
926	2
928	1
929	2
930	1
931	2
935	1
938	2
941	1
942	1
943	1
944	1
946	1
948	3
954	1
955	3
956	1
957	1
958	1
960	1
961	1
963	1
964	1
967	2
969	3
974	1
975	1
978	1
981	1
982	1
983	1
985	1
986	1
987	1
992	1
994	1
995	1
999	1
1000	2
1002	1
1008	1
1009	2
1012	2
1015	1
1017	1
1021	1
1023	1
1026	3
1031	2
1036	1
1037	1
1041	1
1043	1
1044	1
1046	1
1047	2
1054	1
1061	1
1063	1
1064	2
1066	1
1071	1
1072	1
1076	1
1082	1
1084	1
1087	2
1089	1
1090	1
1093	2
1095	1
1096	1
1098	1
1101	1
1102	1
1103	1
1104	1
1108	1
1110	1
1111	2
1117	1
1118	1
1120	1
1125	1
1127	1
1131	1
1139	1
1140	1
1142	1
1144	1
1146	1
1156	1
1161	1
1164	1
1169	1
1177	1
1185	1
1187	1
1191	1
1194	1
1210	1
1211	1
1212	1
1213	1
1214	1
1216	1
1235	1
1238	1
1244	1
1253	1
1254	3
1256	1
1258	1
1261	1
1262	1
1271	1
1275	1
1280	1
1285	1
1287	1
1289	1
1292	1
1309	1
1311	1
1323	1
1326	1
1338	1
1340	1
1344	1
1345	1
1348	1
1352	1
1354	1
1356	1
1357	1
1377	1
1379	1
1383	1
1390	1
1391	1
1401	1
1409	1
1415	1
1417	1
1418	1
1422	1
1423	1
1425	1
1444	1
1450	1
1451	1
1454	1
1458	1
1471	1
1474	1
1477	1
1478	1
1482	1
1491	1
1492	1
1518	1
1550	1
1554	1
1556	1
1562	1
1563	1
1566	1
1569	1
1579	1
1581	1
1620	1
1626	1
1633	1
1635	1
1655	1
1658	1
1667	1
1684	1
1693	1
1695	1
1699	1
1704	1
1708	1
1718	1
1766	1
1775	1
1800	1
1802	1
1812	1
1814	1
1817	1
1819	1
1822	1
1828	1
1831	1
1849	1
1867	1
1885	1
1909	1
1912	1
1921	1
1924	1
1929	1
1934	1
1944	1
1964	1
1967	1
1993	1
2006	1
2030	1
2031	1
2072	1
2124	1
2132	1
2149	1
2168	1
2213	1
2250	1
2258	1
2259	1
2274	1
2280	1
2302	1
2339	1
2377	1
2385	1
2548	1
2554	1
2559	1
2645	1
2710	1
2712	1
2882	1
2960	1
3112	1
3129	1
3277	1
3294	1
3379	1
3406	1
3471	1
3497	1
3545	1
3673	1
3964	1
4020	1
4315	1
4381	1
4523	1
5213	1
5607	1
6350	1
6757	1
7088	1
7833	1
9123	1
9627	1
280353	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
._._.._..._._._.........._..._._..............__.__..............._..._.
......_._._..._..._..._.._............._.._......_.__..
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]