Done.
-parsing GTF file: /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.gtf
* Running CMD: /usr/local/bin/STAR --runThreadN 8 --genomeDir /tmp/nxf.2slL2KydIu/ctat_genome_lib_build_dir/ref_genome.fa.star.idx --outSAMtype BAM SortedByCoordinate --twopassMode None --alignSJDBoverhangMin 10 --genomeSuffixLengthMax 10000 --limitBAMsortRAM 47271261705 --alignInsertionFlush Right --alignMatesGapMax 100000 --alignIntronMax 100000 --outSAMattributes All --readFilesIn /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1_1.fastp.fastq.gz /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1_2.fastp.fastq.gz --genomeFastaFiles /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.fa --outSAMfilter KeepAllAddedReferences --sjdbGTFfile /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.gtf --alignSJstitchMismatchNmax 5 -1 5 5 --scoreGapNoncan -6 --readFilesCommand 'gunzip -c'
* Running CMD: mv Aligned.sortedByCoord.out.bam tih_rna_sample_00729_B23MVV7LT4_1.star.sortedByCoord.out.bam
* Running CMD: samtools index tih_rna_sample_00729_B23MVV7LT4_1.star.sortedByCoord.out.bam
11:25:38 : INFO : Done.
-parsing GTF file: /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.gtf
-parsing /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.star.cSorted.dupsMarked.bam
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[2210000] -done parsing /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.star.cSorted.dupsMarked.bam. Extracting junction info.
junction read elimination tally: $VAR1 = {
'num_hits: 5 != num_counted_on_fusion_contigs 4 ' => 300,
'num_hits: 4 != num_counted_on_fusion_contigs 3 ' => 1524,
' ** passed ** ' => 9257,
'seq-similar region overlap' => 3,
'low complexity anchor region' => 19,
'num_hits: 6 != num_counted_on_fusion_contigs 4 ' => 24,
'exons hit < 2' => 1,
'num_hits: 5 != num_counted_on_fusion_contigs 3 ' => 348,
'num_hits: 5 != num_counted_on_fusion_contigs 1 ' => 6,
'excessive soft clipping' => 25411,
'per_id < 96' => 14579,
'num_hits: 2 != num_counted_on_fusion_contigs 1 ' => 3364,
'num_hits: 3 != num_counted_on_fusion_contigs 1 ' => 839,
'num_hits: 6 != num_counted_on_fusion_contigs 2 ' => 14,
'num_hits: 4 != num_counted_on_fusion_contigs 2 ' => 510,
'num_hits: 5 != num_counted_on_fusion_contigs 2 ' => 112,
'num genes matched < 2' => 33,
'small anchor length' => 430,
'num_hits: 3 != num_counted_on_fusion_contigs 2 ' => 1598,
'num_hits: 4 != num_counted_on_fusion_contigs 1 ' => 137
};
-writing fusion junction support info.
-outputting the spanning read info: /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info.
- counting read alignments among fusion contigs.
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[3000] -fusion SPANNING read extraction for scaff: AC092807.3--DDAH1
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[204000] -fusion SPANNING read extraction for scaff: AUTS2--TFAP2A
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[1091000] -fusion SPANNING read extraction for scaff: IGH-@-ext--EPHA10
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[16000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA8
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[12000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGC5
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[12000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGC4
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[14000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGB7
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[11000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGB6
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[14000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA12
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[20000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA10
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[13000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA11
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[11000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA9
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[138000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGC3
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[162000] -fusion SPANNING read extraction for scaff: PRSS27--TPSB2
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[73000] -fusion SPANNING read extraction for scaff: STX16--NPEPL1
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[204000] -fusion SPANNING read extraction for scaff: TFAP2A--AUTS2
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[31000] -fusion SPANNING read extraction for scaff: TLK2--FAM157A
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[6000] -fusion SPANNING read extraction for scaff: TLK2P1--AC110079.1
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[14000] -fusion SPANNING read extraction for scaff: TVP23C--CDRT4
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[154000] -fusion SPANNING read extraction for scaff: ZSWIM8--PKD2L1
-filtered reads reasons: $VAR1 = {
'seq similar region alignment' => 15881,
'lacks exon overlap' => 2189
};
EM: Starting log likelihood: -1940.125577
EM: Round [1] log likelihood: -1939.715704
EM: Round [2] log likelihood: -1939.696547
EM: Round [3] log likelihood: -1939.677860
EM: Round [4] log likelihood: -1939.659557
EM: Round [5] log likelihood: -1939.641623
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EM: Round [976] log likelihood: -1937.558899
EM: Round [977] log likelihood: -1937.558648
EM: Round [978] log likelihood: -1937.558397
EM: Round [979] log likelihood: -1937.558147
EM: Round [980] log likelihood: -1937.557898
EM: Round [981] log likelihood: -1937.557650
EM: Round [982] log likelihood: -1937.557402
EM: Round [983] log likelihood: -1937.557154
EM: Round [984] log likelihood: -1937.556908
EM: Round [985] log likelihood: -1937.556662
EM: Round [986] log likelihood: -1937.556416
EM: Round [987] log likelihood: -1937.556171
EM: Round [988] log likelihood: -1937.555927
EM: Round [989] log likelihood: -1937.555683
EM: Round [990] log likelihood: -1937.555440
EM: Round [991] log likelihood: -1937.555198
EM: Round [992] log likelihood: -1937.554956
EM: Round [993] log likelihood: -1937.554715
EM: Round [994] log likelihood: -1937.554474
EM: Round [995] log likelihood: -1937.554234
EM: Round [996] log likelihood: -1937.553994
EM: Round [997] log likelihood: -1937.553755
EM: Round [998] log likelihood: -1937.553517
EM: Round [999] log likelihood: -1937.553279
EM: Round [1000] log likelihood: -1937.553042
EM: Round [1001] log likelihood: -1937.552806
[bam_sort_core] merging from 0 files and 8 in-memory blocks...
-extracting read coordinates from /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.consolidated.bam into /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.consolidated.bam.read_coords
CMD: touch /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.consolidated.bam.read_coords.ok
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k2,2 -k4,4n /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.consolidated.bam.read_coords > /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.consolidated.bam.read_coords.sort_by_readname
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k3,3n /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.consolidated.bam.frag_coords > /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.consolidated.bam.frag_coords.coord_sorted
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --genome_lib_dir ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter --genome_lib_dir ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 50
CMD: cp /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter.post_promisc_filter /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.post_blast_and_promiscuity_filter
-done, see /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass
EM: Starting log likelihood: -1672.247484
EM: Round [1] log likelihood: -1672.216206
EM: Round [2] log likelihood: -1672.201154
EM: Round [3] log likelihood: -1672.186405
EM: Round [4] log likelihood: -1672.171902
EM: Round [5] log likelihood: -1672.157639
EM: Round [6] log likelihood: -1672.143607
EM: Round [7] log likelihood: -1672.129800
EM: Round [8] log likelihood: -1672.116212
EM: Round [9] log likelihood: -1672.102835
EM: Round [10] log likelihood: -1672.089664
EM: Round [11] log likelihood: -1672.076694
EM: Round [12] log likelihood: -1672.063918
EM: Round [13] log likelihood: -1672.051331
EM: Round [14] log likelihood: -1672.038929
EM: Round [15] log likelihood: -1672.026705
EM: Round [16] log likelihood: -1672.014656
EM: Round [17] log likelihood: -1672.002777
EM: Round [18] log likelihood: -1671.991063
EM: Round [19] log likelihood: -1671.979511
EM: Round [20] log likelihood: -1671.968116
EM: Round [21] log likelihood: -1671.956875
EM: Round [22] log likelihood: -1671.945783
EM: Round [23] log likelihood: -1671.934838
EM: Round [24] log likelihood: -1671.924035
EM: Round [25] log likelihood: -1671.913371
EM: Round [26] log likelihood: -1671.902843
EM: Round [27] log likelihood: -1671.892448
EM: Round [28] log likelihood: -1671.882183
EM: Round [29] log likelihood: -1671.872045
EM: Round [30] log likelihood: -1671.862031
EM: Round [31] log likelihood: -1671.852138
EM: Round [32] log likelihood: -1671.842365
EM: Round [33] log likelihood: -1671.832707
EM: Round [34] log likelihood: -1671.823163
EM: Round [35] log likelihood: -1671.813730
EM: Round [36] log likelihood: -1671.804406
EM: Round [37] log likelihood: -1671.795189
EM: Round [38] log likelihood: -1671.786076
EM: Round [39] log likelihood: -1671.777066
EM: Round [40] log likelihood: -1671.768156
EM: Round [41] log likelihood: -1671.759344
EM: Round [42] log likelihood: -1671.750629
EM: Round [43] log likelihood: -1671.742009
EM: Round [44] log likelihood: -1671.733481
EM: Round [45] log likelihood: -1671.725044
EM: Round [46] log likelihood: -1671.716696
EM: Round [47] log likelihood: -1671.708436
EM: Round [48] log likelihood: -1671.700262
EM: Round [49] log likelihood: -1671.692172
EM: Round [50] log likelihood: -1671.684165
EM: Round [51] log likelihood: -1671.676239
EM: Round [52] log likelihood: -1671.668393
EM: Round [53] log likelihood: -1671.660625
EM: Round [54] log likelihood: -1671.652935
EM: Round [55] log likelihood: -1671.645320
EM: Round [56] log likelihood: -1671.637780
EM: Round [57] log likelihood: -1671.630313
EM: Round [58] log likelihood: -1671.622917
EM: Round [59] log likelihood: -1671.615592
EM: Round [60] log likelihood: -1671.608337
EM: Round [61] log likelihood: -1671.601150
EM: Round [62] log likelihood: -1671.594030
EM: Round [63] log likelihood: -1671.586977
EM: Round [64] log likelihood: -1671.579988
EM: Round [65] log likelihood: -1671.573064
EM: Round [66] log likelihood: -1671.566202
EM: Round [67] log likelihood: -1671.559402
EM: Round [68] log likelihood: -1671.552663
EM: Round [69] log likelihood: -1671.545985
EM: Round [70] log likelihood: -1671.539365
EM: Round [71] log likelihood: -1671.532803
EM: Round [72] log likelihood: -1671.526299
EM: Round [73] log likelihood: -1671.519852
EM: Round [74] log likelihood: -1671.513459
EM: Round [75] log likelihood: -1671.507122
EM: Round [76] log likelihood: -1671.500839
EM: Round [77] log likelihood: -1671.494609
EM: Round [78] log likelihood: -1671.488431
EM: Round [79] log likelihood: -1671.482304
EM: Round [80] log likelihood: -1671.476229
EM: Round [81] log likelihood: -1671.470204
EM: Round [82] log likelihood: -1671.464228
EM: Round [83] log likelihood: -1671.458301
EM: Round [84] log likelihood: -1671.452422
EM: Round [85] log likelihood: -1671.446591
EM: Round [86] log likelihood: -1671.440806
EM: Round [87] log likelihood: -1671.435067
EM: Round [88] log likelihood: -1671.429374
EM: Round [89] log likelihood: -1671.423726
EM: Round [90] log likelihood: -1671.418122
EM: Round [91] log likelihood: -1671.412561
EM: Round [92] log likelihood: -1671.407044
EM: Round [93] log likelihood: -1671.401569
EM: Round [94] log likelihood: -1671.396136
EM: Round [95] log likelihood: -1671.390745
EM: Round [96] log likelihood: -1671.385394
EM: Round [97] log likelihood: -1671.380084
EM: Round [98] log likelihood: -1671.374813
EM: Round [99] log likelihood: -1671.369582
EM: Round [100] log likelihood: -1671.364390
EM: Round [101] log likelihood: -1671.359236
EM: Round [102] log likelihood: -1671.354120
EM: Round [103] log likelihood: -1671.349042
EM: Round [104] log likelihood: -1671.344000
EM: Round [105] log likelihood: -1671.338995
EM: Round [106] log likelihood: -1671.334026
EM: Round [107] log likelihood: -1671.329092
EM: Round [108] log likelihood: -1671.324194
EM: Round [109] log likelihood: -1671.319330
EM: Round [110] log likelihood: -1671.314501
EM: Round [111] log likelihood: -1671.309705
EM: Round [112] log likelihood: -1671.304944
EM: Round [113] log likelihood: -1671.300215
EM: Round [114] log likelihood: -1671.295519
EM: Round [115] log likelihood: -1671.290856
EM: Round [116] log likelihood: -1671.286224
EM: Round [117] log likelihood: -1671.281624
EM: Round [118] log likelihood: -1671.277056
EM: Round [119] log likelihood: -1671.272518
EM: Round [120] log likelihood: -1671.268011
EM: Round [121] log likelihood: -1671.263534
EM: Round [122] log likelihood: -1671.259087
EM: Round [123] log likelihood: -1671.254670
EM: Round [124] log likelihood: -1671.250282
EM: Round [125] log likelihood: -1671.245922
EM: Round [126] log likelihood: -1671.241592
EM: Round [127] log likelihood: -1671.237289
EM: Round [128] log likelihood: -1671.233015
EM: Round [129] log likelihood: -1671.228769
EM: Round [130] log likelihood: -1671.224549
EM: Round [131] log likelihood: -1671.220357
EM: Round [132] log likelihood: -1671.216192
EM: Round [133] log likelihood: -1671.212053
EM: Round [134] log likelihood: -1671.207941
EM: Round [135] log likelihood: -1671.203854
EM: Round [136] log likelihood: -1671.199793
EM: Round [137] log likelihood: -1671.195758
EM: Round [138] log likelihood: -1671.191748
EM: Round [139] log likelihood: -1671.187763
EM: Round [140] log likelihood: -1671.183802
EM: Round [141] log likelihood: -1671.179866
EM: Round [142] log likelihood: -1671.175954
EM: Round [143] log likelihood: -1671.172066
EM: Round [144] log likelihood: -1671.168202
EM: Round [145] log likelihood: -1671.164361
EM: Round [146] log likelihood: -1671.160544
EM: Round [147] log likelihood: -1671.156749
EM: Round [148] log likelihood: -1671.152977
EM: Round [149] log likelihood: -1671.149228
EM: Round [150] log likelihood: -1671.145501
EM: Round [151] log likelihood: -1671.141797
EM: Round [152] log likelihood: -1671.138114
EM: Round [153] log likelihood: -1671.134453
EM: Round [154] log likelihood: -1671.130813
EM: Round [155] log likelihood: -1671.127195
EM: Round [156] log likelihood: -1671.123598
EM: Round [157] log likelihood: -1671.120021
EM: Round [158] log likelihood: -1671.116466
EM: Round [159] log likelihood: -1671.112931
EM: Round [160] log likelihood: -1671.109416
EM: Round [161] log likelihood: -1671.105921
EM: Round [162] log likelihood: -1671.102447
EM: Round [163] log likelihood: -1671.098992
EM: Round [164] log likelihood: -1671.095556
EM: Round [165] log likelihood: -1671.092140
EM: Round [166] log likelihood: -1671.088744
EM: Round [167] log likelihood: -1671.085366
EM: Round [168] log likelihood: -1671.082007
EM: Round [169] log likelihood: -1671.078667
EM: Round [170] log likelihood: -1671.075346
EM: Round [171] log likelihood: -1671.072043
EM: Round [172] log likelihood: -1671.068758
EM: Round [173] log likelihood: -1671.065491
EM: Round [174] log likelihood: -1671.062242
EM: Round [175] log likelihood: -1671.059011
EM: Round [176] log likelihood: -1671.055798
EM: Round [177] log likelihood: -1671.052601
EM: Round [178] log likelihood: -1671.049423
EM: Round [179] log likelihood: -1671.046261
EM: Round [180] log likelihood: -1671.043116
EM: Round [181] log likelihood: -1671.039989
EM: Round [182] log likelihood: -1671.036878
EM: Round [183] log likelihood: -1671.033783
EM: Round [184] log likelihood: -1671.030705
EM: Round [185] log likelihood: -1671.027643
EM: Round [186] log likelihood: -1671.024598
EM: Round [187] log likelihood: -1671.021568
EM: Round [188] log likelihood: -1671.018555
EM: Round [189] log likelihood: -1671.015557
EM: Round [190] log likelihood: -1671.012574
EM: Round [191] log likelihood: -1671.009608
EM: Round [192] log likelihood: -1671.006656
EM: Round [193] log likelihood: -1671.003720
EM: Round [194] log likelihood: -1671.000799
EM: Round [195] log likelihood: -1670.997893
EM: Round [196] log likelihood: -1670.995002
EM: Round [197] log likelihood: -1670.992126
EM: Round [198] log likelihood: -1670.989264
EM: Round [199] log likelihood: -1670.986417
EM: Round [200] log likelihood: -1670.983585
EM: Round [201] log likelihood: -1670.980766
EM: Round [202] log likelihood: -1670.977962
EM: Round [203] log likelihood: -1670.975172
EM: Round [204] log likelihood: -1670.972396
EM: Round [205] log likelihood: -1670.969634
EM: Round [206] log likelihood: -1670.966885
EM: Round [207] log likelihood: -1670.964151
EM: Round [208] log likelihood: -1670.961429
EM: Round [209] log likelihood: -1670.958722
EM: Round [210] log likelihood: -1670.956027
EM: Round [211] log likelihood: -1670.953346
EM: Round [212] log likelihood: -1670.950678
EM: Round [213] log likelihood: -1670.948023
EM: Round [214] log likelihood: -1670.945381
EM: Round [215] log likelihood: -1670.942752
EM: Round [216] log likelihood: -1670.940135
EM: Round [217] log likelihood: -1670.937531
EM: Round [218] log likelihood: -1670.934940
EM: Round [219] log likelihood: -1670.932361
EM: Round [220] log likelihood: -1670.929795
EM: Round [221] log likelihood: -1670.927241
EM: Round [222] log likelihood: -1670.924699
EM: Round [223] log likelihood: -1670.922169
EM: Round [224] log likelihood: -1670.919651
EM: Round [225] log likelihood: -1670.917146
EM: Round [226] log likelihood: -1670.914652
EM: Round [227] log likelihood: -1670.912169
EM: Round [228] log likelihood: -1670.909699
EM: Round [229] log likelihood: -1670.907240
EM: Round [230] log likelihood: -1670.904792
EM: Round [231] log likelihood: -1670.902356
EM: Round [232] log likelihood: -1670.899932
EM: Round [233] log likelihood: -1670.897518
EM: Round [234] log likelihood: -1670.895116
EM: Round [235] log likelihood: -1670.892725
EM: Round [236] log likelihood: -1670.890345
EM: Round [237] log likelihood: -1670.887976
EM: Round [238] log likelihood: -1670.885618
EM: Round [239] log likelihood: -1670.883270
EM: Round [240] log likelihood: -1670.880934
EM: Round [241] log likelihood: -1670.878608
EM: Round [242] log likelihood: -1670.876292
EM: Round [243] log likelihood: -1670.873987
EM: Round [244] log likelihood: -1670.871693
EM: Round [245] log likelihood: -1670.869409
EM: Round [246] log likelihood: -1670.867135
EM: Round [247] log likelihood: -1670.864871
EM: Round [248] log likelihood: -1670.862618
EM: Round [249] log likelihood: -1670.860374
EM: Round [250] log likelihood: -1670.858141
EM: Round [251] log likelihood: -1670.855918
EM: Round [252] log likelihood: -1670.853704
EM: Round [253] log likelihood: -1670.851501
EM: Round [254] log likelihood: -1670.849307
EM: Round [255] log likelihood: -1670.847122
EM: Round [256] log likelihood: -1670.844948
EM: Round [257] log likelihood: -1670.842783
EM: Round [258] log likelihood: -1670.840627
EM: Round [259] log likelihood: -1670.838481
EM: Round [260] log likelihood: -1670.836345
EM: Round [261] log likelihood: -1670.834217
EM: Round [262] log likelihood: -1670.832099
EM: Round [263] log likelihood: -1670.829990
EM: Round [264] log likelihood: -1670.827891
EM: Round [265] log likelihood: -1670.825800
EM: Round [266] log likelihood: -1670.823718
EM: Round [267] log likelihood: -1670.821646
EM: Round [268] log likelihood: -1670.819582
EM: Round [269] log likelihood: -1670.817527
EM: Round [270] log likelihood: -1670.815481
EM: Round [271] log likelihood: -1670.813443
EM: Round [272] log likelihood: -1670.811415
EM: Round [273] log likelihood: -1670.809395
EM: Round [274] log likelihood: -1670.807383
EM: Round [275] log likelihood: -1670.805380
EM: Round [276] log likelihood: -1670.803386
EM: Round [277] log likelihood: -1670.801400
EM: Round [278] log likelihood: -1670.799422
EM: Round [279] log likelihood: -1670.797453
EM: Round [280] log likelihood: -1670.795492
EM: Round [281] log likelihood: -1670.793539
EM: Round [282] log likelihood: -1670.791594
EM: Round [283] log likelihood: -1670.789657
EM: Round [284] log likelihood: -1670.787729
EM: Round [285] log likelihood: -1670.785808
EM: Round [286] log likelihood: -1670.783896
EM: Round [287] log likelihood: -1670.781991
EM: Round [288] log likelihood: -1670.780094
EM: Round [289] log likelihood: -1670.778205
EM: Round [290] log likelihood: -1670.776324
EM: Round [291] log likelihood: -1670.774450
EM: Round [292] log likelihood: -1670.772585
EM: Round [293] log likelihood: -1670.770726
EM: Round [294] log likelihood: -1670.768876
EM: Round [295] log likelihood: -1670.767033
EM: Round [296] log likelihood: -1670.765197
EM: Round [297] log likelihood: -1670.763369
EM: Round [298] log likelihood: -1670.761549
EM: Round [299] log likelihood: -1670.759735
EM: Round [300] log likelihood: -1670.757929
EM: Round [301] log likelihood: -1670.756131
EM: Round [302] log likelihood: -1670.754339
EM: Round [303] log likelihood: -1670.752555
EM: Round [304] log likelihood: -1670.750778
EM: Round [305] log likelihood: -1670.749008
EM: Round [306] log likelihood: -1670.747245
EM: Round [307] log likelihood: -1670.745489
EM: Round [308] log likelihood: -1670.743741
EM: Round [309] log likelihood: -1670.741999
EM: Round [310] log likelihood: -1670.740264
EM: Round [311] log likelihood: -1670.738536
EM: Round [312] log likelihood: -1670.736814
EM: Round [313] log likelihood: -1670.735100
EM: Round [314] log likelihood: -1670.733392
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EM: Round [317] log likelihood: -1670.728309
EM: Round [318] log likelihood: -1670.726628
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EM: Round [320] log likelihood: -1670.723286
EM: Round [321] log likelihood: -1670.721625
EM: Round [322] log likelihood: -1670.719970
EM: Round [323] log likelihood: -1670.718321
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EM: Round [326] log likelihood: -1670.713414
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EM: Round [849] log likelihood: -1670.307232
EM: Round [850] log likelihood: -1670.306897
EM: Round [851] log likelihood: -1670.306562
EM: Round [852] log likelihood: -1670.306229
EM: Round [853] log likelihood: -1670.305896
EM: Round [854] log likelihood: -1670.305564
EM: Round [855] log likelihood: -1670.305233
EM: Round [856] log likelihood: -1670.304902
EM: Round [857] log likelihood: -1670.304573
EM: Round [858] log likelihood: -1670.304244
EM: Round [859] log likelihood: -1670.303917
EM: Round [860] log likelihood: -1670.303590
EM: Round [861] log likelihood: -1670.303264
EM: Round [862] log likelihood: -1670.302939
EM: Round [863] log likelihood: -1670.302614
EM: Round [864] log likelihood: -1670.302291
EM: Round [865] log likelihood: -1670.301968
EM: Round [866] log likelihood: -1670.301646
EM: Round [867] log likelihood: -1670.301325
EM: Round [868] log likelihood: -1670.301005
EM: Round [869] log likelihood: -1670.300685
EM: Round [870] log likelihood: -1670.300367
EM: Round [871] log likelihood: -1670.300049
EM: Round [872] log likelihood: -1670.299732
EM: Round [873] log likelihood: -1670.299416
EM: Round [874] log likelihood: -1670.299101
EM: Round [875] log likelihood: -1670.298786
EM: Round [876] log likelihood: -1670.298472
EM: Round [877] log likelihood: -1670.298159
EM: Round [878] log likelihood: -1670.297847
EM: Round [879] log likelihood: -1670.297536
EM: Round [880] log likelihood: -1670.297225
EM: Round [881] log likelihood: -1670.296916
EM: Round [882] log likelihood: -1670.296607
EM: Round [883] log likelihood: -1670.296298
EM: Round [884] log likelihood: -1670.295991
EM: Round [885] log likelihood: -1670.295684
EM: Round [886] log likelihood: -1670.295378
EM: Round [887] log likelihood: -1670.295073
EM: Round [888] log likelihood: -1670.294769
EM: Round [889] log likelihood: -1670.294466
EM: Round [890] log likelihood: -1670.294163
EM: Round [891] log likelihood: -1670.293861
EM: Round [892] log likelihood: -1670.293560
EM: Round [893] log likelihood: -1670.293259
EM: Round [894] log likelihood: -1670.292959
EM: Round [895] log likelihood: -1670.292660
EM: Round [896] log likelihood: -1670.292362
EM: Round [897] log likelihood: -1670.292065
EM: Round [898] log likelihood: -1670.291768
EM: Round [899] log likelihood: -1670.291472
EM: Round [900] log likelihood: -1670.291177
EM: Round [901] log likelihood: -1670.290883
EM: Round [902] log likelihood: -1670.290589
EM: Round [903] log likelihood: -1670.290296
EM: Round [904] log likelihood: -1670.290004
EM: Round [905] log likelihood: -1670.289712
EM: Round [906] log likelihood: -1670.289422
EM: Round [907] log likelihood: -1670.289132
EM: Round [908] log likelihood: -1670.288842
EM: Round [909] log likelihood: -1670.288554
EM: Round [910] log likelihood: -1670.288266
EM: Round [911] log likelihood: -1670.287979
EM: Round [912] log likelihood: -1670.287693
EM: Round [913] log likelihood: -1670.287407
EM: Round [914] log likelihood: -1670.287122
EM: Round [915] log likelihood: -1670.286838
EM: Round [916] log likelihood: -1670.286555
EM: Round [917] log likelihood: -1670.286272
EM: Round [918] log likelihood: -1670.285990
EM: Round [919] log likelihood: -1670.285708
EM: Round [920] log likelihood: -1670.285428
EM: Round [921] log likelihood: -1670.285148
EM: Round [922] log likelihood: -1670.284869
EM: Round [923] log likelihood: -1670.284590
EM: Round [924] log likelihood: -1670.284312
EM: Round [925] log likelihood: -1670.284035
EM: Round [926] log likelihood: -1670.283759
EM: Round [927] log likelihood: -1670.283483
EM: Round [928] log likelihood: -1670.283208
EM: Round [929] log likelihood: -1670.282934
EM: Round [930] log likelihood: -1670.282660
EM: Round [931] log likelihood: -1670.282387
EM: Round [932] log likelihood: -1670.282115
EM: Round [933] log likelihood: -1670.281843
EM: Round [934] log likelihood: -1670.281572
EM: Round [935] log likelihood: -1670.281302
EM: Round [936] log likelihood: -1670.281033
EM: Round [937] log likelihood: -1670.280764
EM: Round [938] log likelihood: -1670.280496
EM: Round [939] log likelihood: -1670.280228
EM: Round [940] log likelihood: -1670.279961
EM: Round [941] log likelihood: -1670.279695
EM: Round [942] log likelihood: -1670.279430
EM: Round [943] log likelihood: -1670.279165
EM: Round [944] log likelihood: -1670.278900
EM: Round [945] log likelihood: -1670.278637
EM: Round [946] log likelihood: -1670.278374
EM: Round [947] log likelihood: -1670.278112
EM: Round [948] log likelihood: -1670.277850
EM: Round [949] log likelihood: -1670.277589
EM: Round [950] log likelihood: -1670.277329
EM: Round [951] log likelihood: -1670.277069
EM: Round [952] log likelihood: -1670.276810
EM: Round [953] log likelihood: -1670.276552
EM: Round [954] log likelihood: -1670.276294
EM: Round [955] log likelihood: -1670.276037
EM: Round [956] log likelihood: -1670.275781
EM: Round [957] log likelihood: -1670.275525
EM: Round [958] log likelihood: -1670.275270
EM: Round [959] log likelihood: -1670.275016
EM: Round [960] log likelihood: -1670.274762
EM: Round [961] log likelihood: -1670.274509
EM: Round [962] log likelihood: -1670.274256
EM: Round [963] log likelihood: -1670.274004
EM: Round [964] log likelihood: -1670.273753
EM: Round [965] log likelihood: -1670.273502
EM: Round [966] log likelihood: -1670.273252
EM: Round [967] log likelihood: -1670.273003
EM: Round [968] log likelihood: -1670.272754
EM: Round [969] log likelihood: -1670.272505
EM: Round [970] log likelihood: -1670.272258
EM: Round [971] log likelihood: -1670.272011
EM: Round [972] log likelihood: -1670.271765
EM: Round [973] log likelihood: -1670.271519
EM: Round [974] log likelihood: -1670.271274
EM: Round [975] log likelihood: -1670.271029
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EM: Round [977] log likelihood: -1670.270542
EM: Round [978] log likelihood: -1670.270299
EM: Round [979] log likelihood: -1670.270057
EM: Round [980] log likelihood: -1670.269815
EM: Round [981] log likelihood: -1670.269574
EM: Round [982] log likelihood: -1670.269334
EM: Round [983] log likelihood: -1670.269094
EM: Round [984] log likelihood: -1670.268855
EM: Round [985] log likelihood: -1670.268617
EM: Round [986] log likelihood: -1670.268379
EM: Round [987] log likelihood: -1670.268141
EM: Round [988] log likelihood: -1670.267905
EM: Round [989] log likelihood: -1670.267668
EM: Round [990] log likelihood: -1670.267433
EM: Round [991] log likelihood: -1670.267198
EM: Round [992] log likelihood: -1670.266963
EM: Round [993] log likelihood: -1670.266729
EM: Round [994] log likelihood: -1670.266496
EM: Round [995] log likelihood: -1670.266263
EM: Round [996] log likelihood: -1670.266031
EM: Round [997] log likelihood: -1670.265800
EM: Round [998] log likelihood: -1670.265569
EM: Round [999] log likelihood: -1670.265338
EM: Round [1000] log likelihood: -1670.265108
EM: Round [1001] log likelihood: -1670.264879
-total frags in /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1_1.fastp.fastq.gz: 296563078
Warning - not locating file: /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.gmap_trinity_GG.fusions.gff3.bed
WARNING, no entry stored in dbm for [ENSG00000226049.3]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
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WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
ls: cannot access 'IGV_inputs': No such file or directory