Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/0c164046f8b8be00c808c8c2b377da/tih_rna_sample_00729_B23MVV7LT4_1_2.fastp.fastq.gz
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/4799f16bdd6beca41b3476733425eb/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/4799f16bdd6beca41b3476733425eb/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/c714102e9b2dfedb458bcf265f8251/tih_rna_sample_00729_B23MVV7LT4_1.fusionreport.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/0c164046f8b8be00c808c8c2b377da/tih_rna_sample_00729_B23MVV7LT4_1_1.fastp.fastq.gz
==> STAGING COMPLETE (6 inputs)
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_pair_to_mini_genome_join.pl --fusions tih_rna_sample_00729_B23MVV7LT4_1.fusionreport.tsv --gtf /tmp/nxf.2slL2KydIu/ctat_genome_lib_build_dir/ref_annot.gtf --genome_fa /tmp/nxf.2slL2KydIu/ctat_genome_lib_build_dir/ref_genome.fa --out_prefix /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1 --shrink_introns --max_intron_length 1000
Done.
Execution Time = 0.12 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_pair_to_mini_genome_join.pl --fusions tih_rna_sample_00729_B23MVV7LT4_1.fusionreport.tsv --gtf /tmp/nxf.2slL2KydIu/ctat_genome_lib_build_dir/ref_annot.gtf --genome_fa /tmp/nxf.2slL2KydIu/ctat_genome_lib_build_dir/ref_genome.fa --out_prefix /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1 --shrink_introns --max_intron_length 1000
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/fusion_contigs.ok
Running: cp /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.fa /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.fa
Execution Time = 0.00 minutes. CMD: cp /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.fa /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.fa
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/cp_contigs_file_workdir
Running: cp /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.gtf /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.gtf
Execution Time = 0.00 minutes. CMD: cp /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.gtf /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.gtf
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/cp_gtf_file_workdir.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fasta_and_gtf_to_cytoband.pl /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.fa /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.gtf > /tmp/nxf.2slL2KydIu/cytoBand.txt
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fasta_and_gtf_to_cytoband.pl /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.fa /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.gtf > /tmp/nxf.2slL2KydIu/cytoBand.txt
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/cytoband.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/gtf_gene_to_bed.pl /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.gtf > /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.bed
-parsing GTF file: /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.gtf
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/gtf_gene_to_bed.pl /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.gtf > /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.bed
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/merged_contig_gtf_to_bed.ok
Running: sort -k1,1 -k2,2n /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.bed > /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: sort -k1,1 -k2,2n /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.bed > /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.bed.sorted.bed
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/tih_rna_sample_00729_B23MVV7LT4_1.bed.bedsort.ok
Running: bgzip -f /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: bgzip -f /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.bed.sorted.bed
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/tih_rna_sample_00729_B23MVV7LT4_1.bed.bgzip.ok
Running: tabix -p bed /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.bed.sorted.bed.gz
Execution Time = 0.00 minutes. CMD: tabix -p bed /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.bed.sorted.bed.gz
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/tih_rna_sample_00729_B23MVV7LT4_1.bed.tabix.ok
Running: samtools faidx /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.fa
Execution Time = 0.00 minutes. CMD: samtools faidx /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.fa
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/merged_contig_fai.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/run_FI_STAR.pl --genome /tmp/nxf.2slL2KydIu/ctat_genome_lib_build_dir/ref_genome.fa --patch /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.fa --max_mate_dist 100000 -G /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.gtf --CPU 8 --out_prefix tih_rna_sample_00729_B23MVV7LT4_1.star --out_dir /tmp/nxf.2slL2KydIu/fi_workdir --reads "/tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1_1.fastp.fastq.gz /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1_2.fastp.fastq.gz"
* Running CMD: /usr/local/bin/STAR --runThreadN 8 --genomeDir /tmp/nxf.2slL2KydIu/ctat_genome_lib_build_dir/ref_genome.fa.star.idx --outSAMtype BAM SortedByCoordinate --twopassMode None --alignSJDBoverhangMin 10 --genomeSuffixLengthMax 10000 --limitBAMsortRAM 47271261705 --alignInsertionFlush Right --alignMatesGapMax 100000 --alignIntronMax 100000 --outSAMattributes All --readFilesIn /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1_1.fastp.fastq.gz /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1_2.fastp.fastq.gz --genomeFastaFiles /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.fa --outSAMfilter KeepAllAddedReferences --sjdbGTFfile /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.gtf --alignSJstitchMismatchNmax 5 -1 5 5 --scoreGapNoncan -6 --readFilesCommand 'gunzip -c'
Jun 08 10:02:20 ..... started STAR run
Jun 08 10:02:20 ..... loading genome
Jun 08 10:04:08 ... generating Suffix Array index
Jun 08 10:08:01 ... completed Suffix Array index
Jun 08 10:08:01 ..... processing annotations GTF
Jun 08 10:08:01 ..... inserting junctions into the genome indices
Jun 08 10:09:02 ..... started mapping
Jun 08 11:25:22 ..... finished mapping
Jun 08 11:25:24 ..... started sorting BAM
Jun 08 11:25:25 ..... finished successfully
* Running CMD: mv Aligned.sortedByCoord.out.bam tih_rna_sample_00729_B23MVV7LT4_1.star.sortedByCoord.out.bam
* Running CMD: samtools index tih_rna_sample_00729_B23MVV7LT4_1.star.sortedByCoord.out.bam
Execution Time = 83.12 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/run_FI_STAR.pl --genome /tmp/nxf.2slL2KydIu/ctat_genome_lib_build_dir/ref_genome.fa --patch /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.fa --max_mate_dist 100000 -G /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.gtf --CPU 8 --out_prefix tih_rna_sample_00729_B23MVV7LT4_1.star --out_dir /tmp/nxf.2slL2KydIu/fi_workdir --reads "/tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1_1.fastp.fastq.gz /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1_2.fastp.fastq.gz"
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/run_STAR.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/bam_mark_duplicates.py -i /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.star.sortedByCoord.out.bam -o /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.star.cSorted.dupsMarked.bam --remove_dups
11:25:38 : INFO : Done.
Execution Time = 0.18 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/bam_mark_duplicates.py -i /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.star.sortedByCoord.out.bam -o /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.star.cSorted.dupsMarked.bam --remove_dups
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/mark_dup_reads.ok
Running: samtools index /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.star.cSorted.dupsMarked.bam
Execution Time = 0.02 minutes. CMD: samtools index /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.star.cSorted.dupsMarked.bam
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/mark_dups_reads.index.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/get_fusion_JUNCTION_reads_from_fusion_contig_bam.pl --gtf_file /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.gtf --MIN_ALIGN_PER_ID 96 --bam /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.star.cSorted.dupsMarked.bam --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam
-parsing GTF file: /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.gtf
-parsing /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.star.cSorted.dupsMarked.bam
[10000]
[20000]
[30000]
[40000]
[50000]
[60000]
[70000]
[80000]
[90000]
[100000]
[110000]
[120000]
[130000]
[140000]
[150000]
[160000]
[170000]
[180000]
[190000]
[200000]
[210000]
[220000]
[230000]
[240000]
[250000]
[260000]
[270000]
[280000]
[290000]
[300000]
[310000]
[320000]
[330000]
[340000]
[350000]
[360000]
[370000]
[380000]
[390000]
[400000]
[410000]
[420000]
[430000]
[440000]
[450000]
[460000]
[470000]
[480000]
[490000]
[500000]
[510000]
[520000]
[530000]
[540000]
[550000]
[560000]
[570000]
[580000]
[590000]
[600000]
[610000]
[620000]
[630000]
[640000]
[650000]
[660000]
[670000]
[680000]
[690000]
[700000]
[710000]
[720000]
[730000]
[740000]
[750000]
[760000]
[770000]
[780000]
[790000]
[800000]
[810000]
[820000]
[830000]
[840000]
[850000]
[860000]
[870000]
[880000]
[890000]
[900000]
[910000]
[920000]
[930000]
[940000]
[950000]
[960000]
[970000]
[980000]
[990000]
[1000000]
[1010000]
[1020000]
[1030000]
[1040000]
[1050000]
[1060000]
[1070000]
[1080000]
[1090000]
[1100000]
[1110000]
[1120000]
[1130000]
[1140000]
[1150000]
[1160000]
[1170000]
[1180000]
[1190000]
[1200000]
[1210000]
[1220000]
[1230000]
[1240000]
[1250000]
[1260000]
[1270000]
[1280000]
[1290000]
[1300000]
[1310000]
[1320000]
[1330000]
[1340000]
[1350000]
[1360000]
[1370000]
[1380000]
[1390000]
[1400000]
[1410000]
[1420000]
[1430000]
[1440000]
[1450000]
[1460000]
[1470000]
[1480000]
[1490000]
[1500000]
[1510000]
[1520000]
[1530000]
[1540000]
[1550000]
[1560000]
[1570000]
[1580000]
[1590000]
[1600000]
[1610000]
[1620000]
[1630000]
[1640000]
[1650000]
[1660000]
[1670000]
[1680000]
[1690000]
[1700000]
[1710000]
[1720000]
[1730000]
[1740000]
[1750000]
[1760000]
[1770000]
[1780000]
[1790000]
[1800000]
[1810000]
[1820000]
[1830000]
[1840000]
[1850000]
[1860000]
[1870000]
[1880000]
[1890000]
[1900000]
[1910000]
[1920000]
[1930000]
[1940000]
[1950000]
[1960000]
[1970000]
[1980000]
[1990000]
[2000000]
[2010000]
[2020000]
[2030000]
[2040000]
[2050000]
[2060000]
[2070000]
[2080000]
[2090000]
[2100000]
[2110000]
[2120000]
[2130000]
[2140000]
[2150000]
[2160000]
[2170000]
[2180000]
[2190000]
[2200000]
[2210000] -done parsing /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.star.cSorted.dupsMarked.bam. Extracting junction info.
junction read elimination tally: $VAR1 = {
'num_hits: 5 != num_counted_on_fusion_contigs 4 ' => 300,
'num_hits: 4 != num_counted_on_fusion_contigs 3 ' => 1524,
' ** passed ** ' => 9257,
'seq-similar region overlap' => 3,
'low complexity anchor region' => 19,
'num_hits: 6 != num_counted_on_fusion_contigs 4 ' => 24,
'exons hit < 2' => 1,
'num_hits: 5 != num_counted_on_fusion_contigs 3 ' => 348,
'num_hits: 5 != num_counted_on_fusion_contigs 1 ' => 6,
'excessive soft clipping' => 25411,
'per_id < 96' => 14579,
'num_hits: 2 != num_counted_on_fusion_contigs 1 ' => 3364,
'num_hits: 3 != num_counted_on_fusion_contigs 1 ' => 839,
'num_hits: 6 != num_counted_on_fusion_contigs 2 ' => 14,
'num_hits: 4 != num_counted_on_fusion_contigs 2 ' => 510,
'num_hits: 5 != num_counted_on_fusion_contigs 2 ' => 112,
'num genes matched < 2' => 33,
'small anchor length' => 430,
'num_hits: 3 != num_counted_on_fusion_contigs 2 ' => 1598,
'num_hits: 4 != num_counted_on_fusion_contigs 1 ' => 137
};
-writing fusion junction support info.
Execution Time = 1.19 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/get_fusion_JUNCTION_reads_from_fusion_contig_bam.pl --gtf_file /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.gtf --MIN_ALIGN_PER_ID 96 --bam /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.star.cSorted.dupsMarked.bam --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/get_fusion_JUNCTION_reads_from_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/get_fusion_SPANNING_reads_from_bam.from_chim_summary.pl --gtf_file /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.gtf --MIN_ALIGN_PER_ID 96 --bam /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.star.cSorted.dupsMarked.bam --junction_info /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.star.cSorted.dupsMarked.bam.fusion_junction_info --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.star.cSorted.dupsMarked.bam.fusion_span_reads.sam
-outputting the spanning read info: /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info.
- counting read alignments among fusion contigs.
[1000]
[2000]
[3000] -fusion SPANNING read extraction for scaff: AC092807.3--DDAH1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000]
[100000]
[101000]
[102000]
[103000]
[104000]
[105000]
[106000]
[107000]
[108000]
[109000]
[110000]
[111000]
[112000]
[113000]
[114000]
[115000]
[116000]
[117000]
[118000]
[119000]
[120000]
[121000]
[122000]
[123000]
[124000]
[125000]
[126000]
[127000]
[128000]
[129000]
[130000]
[131000]
[132000]
[133000]
[134000]
[135000]
[136000]
[137000]
[138000]
[139000]
[140000]
[141000]
[142000]
[143000]
[144000]
[145000]
[146000]
[147000]
[148000]
[149000]
[150000]
[151000]
[152000]
[153000]
[154000]
[155000]
[156000]
[157000]
[158000]
[159000]
[160000]
[161000]
[162000]
[163000]
[164000]
[165000]
[166000]
[167000]
[168000]
[169000]
[170000]
[171000]
[172000]
[173000]
[174000]
[175000]
[176000]
[177000]
[178000]
[179000]
[180000]
[181000]
[182000]
[183000]
[184000]
[185000]
[186000]
[187000]
[188000]
[189000]
[190000]
[191000]
[192000]
[193000]
[194000]
[195000]
[196000]
[197000]
[198000]
[199000]
[200000]
[201000]
[202000]
[203000]
[204000] -fusion SPANNING read extraction for scaff: AUTS2--TFAP2A
[1000]
[2000]
[3000]
[4000]
[5000]
[6000] -fusion SPANNING read extraction for scaff: IGFL1P2--HIF3A
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000]
[100000]
[101000]
[102000]
[103000]
[104000]
[105000]
[106000]
[107000]
[108000]
[109000]
[110000]
[111000]
[112000]
[113000]
[114000]
[115000]
[116000]
[117000]
[118000]
[119000]
[120000]
[121000]
[122000]
[123000]
[124000]
[125000]
[126000]
[127000]
[128000]
[129000]
[130000]
[131000]
[132000]
[133000]
[134000]
[135000]
[136000]
[137000]
[138000]
[139000]
[140000]
[141000]
[142000]
[143000]
[144000]
[145000]
[146000]
[147000]
[148000]
[149000]
[150000]
[151000]
[152000]
[153000]
[154000]
[155000]
[156000]
[157000]
[158000]
[159000]
[160000]
[161000]
[162000]
[163000]
[164000]
[165000]
[166000]
[167000]
[168000]
[169000]
[170000]
[171000]
[172000]
[173000]
[174000]
[175000]
[176000]
[177000]
[178000]
[179000]
[180000]
[181000]
[182000]
[183000]
[184000]
[185000]
[186000]
[187000]
[188000]
[189000]
[190000]
[191000]
[192000]
[193000]
[194000]
[195000]
[196000]
[197000]
[198000]
[199000]
[200000]
[201000]
[202000]
[203000]
[204000]
[205000]
[206000]
[207000]
[208000]
[209000]
[210000]
[211000]
[212000]
[213000]
[214000]
[215000]
[216000]
[217000]
[218000]
[219000]
[220000]
[221000]
[222000]
[223000]
[224000]
[225000]
[226000]
[227000]
[228000]
[229000]
[230000]
[231000]
[232000]
[233000]
[234000]
[235000]
[236000]
[237000]
[238000]
[239000]
[240000]
[241000]
[242000]
[243000]
[244000]
[245000]
[246000]
[247000]
[248000]
[249000]
[250000]
[251000]
[252000]
[253000]
[254000]
[255000]
[256000]
[257000]
[258000]
[259000]
[260000]
[261000]
[262000]
[263000]
[264000]
[265000]
[266000]
[267000]
[268000]
[269000]
[270000]
[271000]
[272000]
[273000]
[274000]
[275000]
[276000]
[277000]
[278000]
[279000]
[280000]
[281000]
[282000]
[283000]
[284000]
[285000]
[286000]
[287000]
[288000]
[289000]
[290000]
[291000]
[292000]
[293000]
[294000]
[295000]
[296000]
[297000]
[298000]
[299000]
[300000]
[301000]
[302000]
[303000]
[304000]
[305000]
[306000]
[307000]
[308000]
[309000]
[310000]
[311000]
[312000]
[313000]
[314000]
[315000]
[316000]
[317000]
[318000]
[319000]
[320000]
[321000]
[322000]
[323000]
[324000]
[325000]
[326000]
[327000]
[328000]
[329000]
[330000]
[331000]
[332000]
[333000]
[334000]
[335000]
[336000]
[337000]
[338000]
[339000]
[340000]
[341000]
[342000]
[343000]
[344000]
[345000]
[346000]
[347000]
[348000]
[349000]
[350000]
[351000]
[352000]
[353000]
[354000]
[355000]
[356000]
[357000]
[358000]
[359000]
[360000]
[361000]
[362000]
[363000]
[364000]
[365000]
[366000]
[367000]
[368000]
[369000]
[370000]
[371000]
[372000]
[373000]
[374000]
[375000]
[376000]
[377000]
[378000]
[379000]
[380000]
[381000]
[382000]
[383000]
[384000]
[385000]
[386000]
[387000]
[388000]
[389000]
[390000]
[391000]
[392000]
[393000]
[394000]
[395000]
[396000]
[397000]
[398000]
[399000]
[400000]
[401000]
[402000]
[403000]
[404000]
[405000]
[406000]
[407000]
[408000]
[409000]
[410000]
[411000]
[412000]
[413000]
[414000]
[415000]
[416000]
[417000]
[418000]
[419000]
[420000]
[421000]
[422000]
[423000]
[424000]
[425000]
[426000]
[427000]
[428000]
[429000]
[430000]
[431000]
[432000]
[433000]
[434000]
[435000]
[436000]
[437000]
[438000]
[439000]
[440000]
[441000]
[442000]
[443000]
[444000]
[445000]
[446000]
[447000]
[448000]
[449000]
[450000]
[451000]
[452000]
[453000]
[454000]
[455000]
[456000]
[457000]
[458000]
[459000]
[460000]
[461000]
[462000]
[463000]
[464000]
[465000]
[466000]
[467000]
[468000]
[469000]
[470000]
[471000]
[472000]
[473000]
[474000]
[475000]
[476000]
[477000]
[478000]
[479000]
[480000]
[481000]
[482000]
[483000]
[484000]
[485000]
[486000]
[487000]
[488000]
[489000]
[490000]
[491000]
[492000]
[493000]
[494000]
[495000]
[496000]
[497000]
[498000]
[499000]
[500000]
[501000]
[502000]
[503000]
[504000]
[505000]
[506000]
[507000]
[508000]
[509000]
[510000]
[511000]
[512000]
[513000]
[514000]
[515000]
[516000]
[517000]
[518000]
[519000]
[520000]
[521000]
[522000]
[523000]
[524000]
[525000]
[526000]
[527000]
[528000]
[529000]
[530000]
[531000]
[532000]
[533000]
[534000]
[535000]
[536000]
[537000]
[538000]
[539000]
[540000]
[541000]
[542000]
[543000]
[544000]
[545000]
[546000]
[547000]
[548000]
[549000]
[550000]
[551000]
[552000]
[553000]
[554000]
[555000]
[556000]
[557000]
[558000]
[559000]
[560000]
[561000]
[562000]
[563000]
[564000]
[565000]
[566000]
[567000]
[568000]
[569000]
[570000]
[571000]
[572000]
[573000]
[574000]
[575000]
[576000]
[577000]
[578000]
[579000]
[580000]
[581000]
[582000]
[583000]
[584000]
[585000]
[586000]
[587000]
[588000]
[589000]
[590000]
[591000]
[592000]
[593000]
[594000]
[595000]
[596000]
[597000]
[598000]
[599000]
[600000]
[601000]
[602000]
[603000]
[604000]
[605000]
[606000]
[607000]
[608000]
[609000]
[610000]
[611000]
[612000]
[613000]
[614000]
[615000]
[616000]
[617000]
[618000]
[619000]
[620000]
[621000]
[622000]
[623000]
[624000]
[625000]
[626000]
[627000]
[628000]
[629000]
[630000]
[631000]
[632000]
[633000]
[634000]
[635000]
[636000]
[637000]
[638000]
[639000]
[640000]
[641000]
[642000]
[643000]
[644000]
[645000]
[646000]
[647000]
[648000]
[649000]
[650000]
[651000]
[652000]
[653000]
[654000]
[655000]
[656000]
[657000]
[658000]
[659000]
[660000]
[661000]
[662000]
[663000]
[664000]
[665000]
[666000]
[667000]
[668000]
[669000]
[670000]
[671000]
[672000]
[673000]
[674000]
[675000]
[676000]
[677000]
[678000]
[679000]
[680000]
[681000]
[682000]
[683000]
[684000]
[685000]
[686000]
[687000]
[688000]
[689000]
[690000]
[691000]
[692000]
[693000]
[694000]
[695000]
[696000]
[697000]
[698000]
[699000]
[700000]
[701000]
[702000]
[703000]
[704000]
[705000]
[706000]
[707000]
[708000]
[709000]
[710000]
[711000]
[712000]
[713000]
[714000]
[715000]
[716000]
[717000]
[718000]
[719000]
[720000]
[721000]
[722000]
[723000]
[724000]
[725000]
[726000]
[727000]
[728000]
[729000]
[730000]
[731000]
[732000]
[733000]
[734000]
[735000]
[736000]
[737000]
[738000]
[739000]
[740000]
[741000]
[742000]
[743000]
[744000]
[745000]
[746000]
[747000]
[748000]
[749000]
[750000]
[751000]
[752000]
[753000]
[754000]
[755000]
[756000]
[757000]
[758000]
[759000]
[760000]
[761000]
[762000]
[763000]
[764000]
[765000]
[766000]
[767000]
[768000]
[769000]
[770000]
[771000]
[772000]
[773000]
[774000]
[775000]
[776000]
[777000]
[778000]
[779000]
[780000]
[781000]
[782000]
[783000]
[784000]
[785000]
[786000]
[787000]
[788000]
[789000]
[790000]
[791000]
[792000]
[793000]
[794000]
[795000]
[796000]
[797000]
[798000]
[799000]
[800000]
[801000]
[802000]
[803000]
[804000]
[805000]
[806000]
[807000]
[808000]
[809000]
[810000]
[811000]
[812000]
[813000]
[814000]
[815000]
[816000]
[817000]
[818000]
[819000]
[820000]
[821000]
[822000]
[823000]
[824000]
[825000]
[826000]
[827000]
[828000]
[829000]
[830000]
[831000]
[832000]
[833000]
[834000]
[835000]
[836000]
[837000]
[838000]
[839000]
[840000]
[841000]
[842000]
[843000]
[844000]
[845000]
[846000]
[847000]
[848000]
[849000]
[850000]
[851000]
[852000]
[853000]
[854000]
[855000]
[856000]
[857000]
[858000]
[859000]
[860000]
[861000]
[862000]
[863000]
[864000]
[865000]
[866000]
[867000]
[868000]
[869000]
[870000]
[871000]
[872000]
[873000]
[874000]
[875000]
[876000]
[877000]
[878000]
[879000]
[880000]
[881000]
[882000]
[883000]
[884000]
[885000]
[886000]
[887000]
[888000]
[889000]
[890000]
[891000]
[892000]
[893000]
[894000]
[895000]
[896000]
[897000]
[898000]
[899000]
[900000]
[901000]
[902000]
[903000]
[904000]
[905000]
[906000]
[907000]
[908000]
[909000]
[910000]
[911000]
[912000]
[913000]
[914000]
[915000]
[916000]
[917000]
[918000]
[919000]
[920000]
[921000]
[922000]
[923000]
[924000]
[925000]
[926000]
[927000]
[928000]
[929000]
[930000]
[931000]
[932000]
[933000]
[934000]
[935000]
[936000]
[937000]
[938000]
[939000]
[940000]
[941000]
[942000]
[943000]
[944000]
[945000]
[946000]
[947000]
[948000]
[949000]
[950000]
[951000]
[952000]
[953000]
[954000]
[955000]
[956000]
[957000]
[958000]
[959000]
[960000]
[961000]
[962000]
[963000]
[964000]
[965000]
[966000]
[967000]
[968000]
[969000]
[970000]
[971000]
[972000]
[973000]
[974000]
[975000]
[976000]
[977000]
[978000]
[979000]
[980000]
[981000]
[982000]
[983000]
[984000]
[985000]
[986000]
[987000]
[988000]
[989000]
[990000]
[991000]
[992000]
[993000]
[994000]
[995000]
[996000]
[997000]
[998000]
[999000]
[1000000]
[1001000]
[1002000]
[1003000]
[1004000]
[1005000]
[1006000]
[1007000]
[1008000]
[1009000]
[1010000]
[1011000]
[1012000]
[1013000]
[1014000]
[1015000]
[1016000]
[1017000]
[1018000]
[1019000]
[1020000]
[1021000]
[1022000]
[1023000]
[1024000]
[1025000]
[1026000]
[1027000]
[1028000]
[1029000]
[1030000]
[1031000]
[1032000]
[1033000]
[1034000]
[1035000]
[1036000]
[1037000]
[1038000]
[1039000]
[1040000]
[1041000]
[1042000]
[1043000]
[1044000]
[1045000]
[1046000]
[1047000]
[1048000]
[1049000]
[1050000]
[1051000]
[1052000]
[1053000]
[1054000]
[1055000]
[1056000]
[1057000]
[1058000]
[1059000]
[1060000]
[1061000]
[1062000]
[1063000]
[1064000]
[1065000]
[1066000]
[1067000]
[1068000]
[1069000]
[1070000]
[1071000]
[1072000]
[1073000]
[1074000]
[1075000]
[1076000]
[1077000]
[1078000]
[1079000]
[1080000]
[1081000]
[1082000]
[1083000]
[1084000]
[1085000]
[1086000]
[1087000]
[1088000]
[1089000]
[1090000]
[1091000] -fusion SPANNING read extraction for scaff: IGH-@-ext--EPHA10
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA8
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGC5
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGC4
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGB7
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGB6
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA12
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA10
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA11
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA9
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000]
[100000]
[101000]
[102000]
[103000]
[104000]
[105000]
[106000]
[107000]
[108000]
[109000]
[110000]
[111000]
[112000]
[113000]
[114000]
[115000]
[116000]
[117000]
[118000]
[119000]
[120000]
[121000]
[122000]
[123000]
[124000]
[125000]
[126000]
[127000]
[128000]
[129000]
[130000]
[131000]
[132000]
[133000]
[134000]
[135000]
[136000]
[137000]
[138000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGC3
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000]
[100000]
[101000]
[102000]
[103000]
[104000]
[105000]
[106000]
[107000]
[108000]
[109000]
[110000]
[111000]
[112000]
[113000]
[114000]
[115000]
[116000]
[117000]
[118000]
[119000]
[120000]
[121000]
[122000]
[123000]
[124000]
[125000]
[126000]
[127000]
[128000]
[129000]
[130000]
[131000]
[132000]
[133000]
[134000]
[135000]
[136000]
[137000]
[138000]
[139000]
[140000]
[141000]
[142000]
[143000]
[144000]
[145000]
[146000]
[147000]
[148000]
[149000]
[150000]
[151000]
[152000]
[153000]
[154000]
[155000]
[156000]
[157000]
[158000]
[159000]
[160000]
[161000]
[162000] -fusion SPANNING read extraction for scaff: PRSS27--TPSB2
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000] -fusion SPANNING read extraction for scaff: STX16--NPEPL1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000]
[100000]
[101000]
[102000]
[103000]
[104000]
[105000]
[106000]
[107000]
[108000]
[109000]
[110000]
[111000]
[112000]
[113000]
[114000]
[115000]
[116000]
[117000]
[118000]
[119000]
[120000]
[121000]
[122000]
[123000]
[124000]
[125000]
[126000]
[127000]
[128000]
[129000]
[130000]
[131000]
[132000]
[133000]
[134000]
[135000]
[136000]
[137000]
[138000]
[139000]
[140000]
[141000]
[142000]
[143000]
[144000]
[145000]
[146000]
[147000]
[148000]
[149000]
[150000]
[151000]
[152000]
[153000]
[154000]
[155000]
[156000]
[157000]
[158000]
[159000]
[160000]
[161000]
[162000]
[163000]
[164000]
[165000]
[166000]
[167000]
[168000]
[169000]
[170000]
[171000]
[172000]
[173000]
[174000]
[175000]
[176000]
[177000]
[178000]
[179000]
[180000]
[181000]
[182000]
[183000]
[184000]
[185000]
[186000]
[187000]
[188000]
[189000]
[190000]
[191000]
[192000]
[193000]
[194000]
[195000]
[196000]
[197000]
[198000]
[199000]
[200000]
[201000]
[202000]
[203000]
[204000] -fusion SPANNING read extraction for scaff: TFAP2A--AUTS2
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000] -fusion SPANNING read extraction for scaff: TLK2--FAM157A
[1000]
[2000]
[3000]
[4000]
[5000]
[6000] -fusion SPANNING read extraction for scaff: TLK2P1--AC110079.1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000] -fusion SPANNING read extraction for scaff: TVP23C--CDRT4
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000]
[100000]
[101000]
[102000]
[103000]
[104000]
[105000]
[106000]
[107000]
[108000]
[109000]
[110000]
[111000]
[112000]
[113000]
[114000]
[115000]
[116000]
[117000]
[118000]
[119000]
[120000]
[121000]
[122000]
[123000]
[124000]
[125000]
[126000]
[127000]
[128000]
[129000]
[130000]
[131000]
[132000]
[133000]
[134000]
[135000]
[136000]
[137000]
[138000]
[139000]
[140000]
[141000]
[142000]
[143000]
[144000]
[145000]
[146000]
[147000]
[148000]
[149000]
[150000]
[151000]
[152000]
[153000]
[154000] -fusion SPANNING read extraction for scaff: ZSWIM8--PKD2L1
-filtered reads reasons: $VAR1 = {
'seq similar region alignment' => 15881,
'lacks exon overlap' => 2189
};
Execution Time = 2.98 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/get_fusion_SPANNING_reads_from_bam.from_chim_summary.pl --gtf_file /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.gtf --MIN_ALIGN_PER_ID 96 --bam /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.star.cSorted.dupsMarked.bam --junction_info /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.star.cSorted.dupsMarked.bam.fusion_junction_info --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.star.cSorted.dupsMarked.bam.fusion_span_reads.sam
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/get_fusion_SPANNING_reads_from_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/coalesce_junction_and_spanning_info.pl /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.star.cSorted.dupsMarked.bam.fusion_junction_info /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info 1 > /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.fusion_preds.coalesced.summary
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/coalesce_junction_and_spanning_info.pl /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.star.cSorted.dupsMarked.bam.fusion_junction_info /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info 1 > /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.fusion_preds.coalesced.summary
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/coalesce_junc_n_span.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_EM_runner.pl /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.fusion_preds.coalesced.summary > /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj
EM: Starting log likelihood: -1940.125577
EM: Round [1] log likelihood: -1939.715704
EM: Round [2] log likelihood: -1939.696547
EM: Round [3] log likelihood: -1939.677860
EM: Round [4] log likelihood: -1939.659557
EM: Round [5] log likelihood: -1939.641623
EM: Round [6] log likelihood: -1939.624044
EM: Round [7] log likelihood: -1939.606807
EM: Round [8] log likelihood: -1939.589900
EM: Round [9] log likelihood: -1939.573311
EM: Round [10] log likelihood: -1939.557028
EM: Round [11] log likelihood: -1939.541042
EM: Round [12] log likelihood: -1939.525343
EM: Round [13] log likelihood: -1939.509920
EM: Round [14] log likelihood: -1939.494766
EM: Round [15] log likelihood: -1939.479871
EM: Round [16] log likelihood: -1939.465227
EM: Round [17] log likelihood: -1939.450826
EM: Round [18] log likelihood: -1939.436662
EM: Round [19] log likelihood: -1939.422726
EM: Round [20] log likelihood: -1939.409012
EM: Round [21] log likelihood: -1939.395514
EM: Round [22] log likelihood: -1939.382225
EM: Round [23] log likelihood: -1939.369140
EM: Round [24] log likelihood: -1939.356253
EM: Round [25] log likelihood: -1939.343557
EM: Round [26] log likelihood: -1939.331049
EM: Round [27] log likelihood: -1939.318723
EM: Round [28] log likelihood: -1939.306574
EM: Round [29] log likelihood: -1939.294597
EM: Round [30] log likelihood: -1939.282789
EM: Round [31] log likelihood: -1939.271144
EM: Round [32] log likelihood: -1939.259659
EM: Round [33] log likelihood: -1939.248330
EM: Round [34] log likelihood: -1939.237152
EM: Round [35] log likelihood: -1939.226123
EM: Round [36] log likelihood: -1939.215238
EM: Round [37] log likelihood: -1939.204494
EM: Round [38] log likelihood: -1939.193888
EM: Round [39] log likelihood: -1939.183417
EM: Round [40] log likelihood: -1939.173078
EM: Round [41] log likelihood: -1939.162867
EM: Round [42] log likelihood: -1939.152781
EM: Round [43] log likelihood: -1939.142819
EM: Round [44] log likelihood: -1939.132977
EM: Round [45] log likelihood: -1939.123252
EM: Round [46] log likelihood: -1939.113643
EM: Round [47] log likelihood: -1939.104146
EM: Round [48] log likelihood: -1939.094760
EM: Round [49] log likelihood: -1939.085481
EM: Round [50] log likelihood: -1939.076309
EM: Round [51] log likelihood: -1939.067240
EM: Round [52] log likelihood: -1939.058272
EM: Round [53] log likelihood: -1939.049404
EM: Round [54] log likelihood: -1939.040634
EM: Round [55] log likelihood: -1939.031959
EM: Round [56] log likelihood: -1939.023378
EM: Round [57] log likelihood: -1939.014888
EM: Round [58] log likelihood: -1939.006489
EM: Round [59] log likelihood: -1938.998179
EM: Round [60] log likelihood: -1938.989955
EM: Round [61] log likelihood: -1938.981817
EM: Round [62] log likelihood: -1938.973762
EM: Round [63] log likelihood: -1938.965790
EM: Round [64] log likelihood: -1938.957898
EM: Round [65] log likelihood: -1938.950086
EM: Round [66] log likelihood: -1938.942351
EM: Round [67] log likelihood: -1938.934693
EM: Round [68] log likelihood: -1938.927110
EM: Round [69] log likelihood: -1938.919600
EM: Round [70] log likelihood: -1938.912164
EM: Round [71] log likelihood: -1938.904798
EM: Round [72] log likelihood: -1938.897503
EM: Round [73] log likelihood: -1938.890277
EM: Round [74] log likelihood: -1938.883118
EM: Round [75] log likelihood: -1938.876027
EM: Round [76] log likelihood: -1938.869001
EM: Round [77] log likelihood: -1938.862039
EM: Round [78] log likelihood: -1938.855142
EM: Round [79] log likelihood: -1938.848306
EM: Round [80] log likelihood: -1938.841532
EM: Round [81] log likelihood: -1938.834819
EM: Round [82] log likelihood: -1938.828166
EM: Round [83] log likelihood: -1938.821571
EM: Round [84] log likelihood: -1938.815034
EM: Round [85] log likelihood: -1938.808553
EM: Round [86] log likelihood: -1938.802129
EM: Round [87] log likelihood: -1938.795761
EM: Round [88] log likelihood: -1938.789446
EM: Round [89] log likelihood: -1938.783185
EM: Round [90] log likelihood: -1938.776977
EM: Round [91] log likelihood: -1938.770822
EM: Round [92] log likelihood: -1938.764717
EM: Round [93] log likelihood: -1938.758663
EM: Round [94] log likelihood: -1938.752659
EM: Round [95] log likelihood: -1938.746704
EM: Round [96] log likelihood: -1938.740797
EM: Round [97] log likelihood: -1938.734938
EM: Round [98] log likelihood: -1938.729127
EM: Round [99] log likelihood: -1938.723362
EM: Round [100] log likelihood: -1938.717642
EM: Round [101] log likelihood: -1938.711968
EM: Round [102] log likelihood: -1938.706339
EM: Round [103] log likelihood: -1938.700753
EM: Round [104] log likelihood: -1938.695211
EM: Round [105] log likelihood: -1938.689712
EM: Round [106] log likelihood: -1938.684255
EM: Round [107] log likelihood: -1938.678839
EM: Round [108] log likelihood: -1938.673465
EM: Round [109] log likelihood: -1938.668132
EM: Round [110] log likelihood: -1938.662839
EM: Round [111] log likelihood: -1938.657585
EM: Round [112] log likelihood: -1938.652370
EM: Round [113] log likelihood: -1938.647194
EM: Round [114] log likelihood: -1938.642057
EM: Round [115] log likelihood: -1938.636957
EM: Round [116] log likelihood: -1938.631894
EM: Round [117] log likelihood: -1938.626867
EM: Round [118] log likelihood: -1938.621878
EM: Round [119] log likelihood: -1938.616924
EM: Round [120] log likelihood: -1938.612005
EM: Round [121] log likelihood: -1938.607121
EM: Round [122] log likelihood: -1938.602272
EM: Round [123] log likelihood: -1938.597458
EM: Round [124] log likelihood: -1938.592676
EM: Round [125] log likelihood: -1938.587929
EM: Round [126] log likelihood: -1938.583214
EM: Round [127] log likelihood: -1938.578532
EM: Round [128] log likelihood: -1938.573882
EM: Round [129] log likelihood: -1938.569264
EM: Round [130] log likelihood: -1938.564677
EM: Round [131] log likelihood: -1938.560122
EM: Round [132] log likelihood: -1938.555597
EM: Round [133] log likelihood: -1938.551103
EM: Round [134] log likelihood: -1938.546639
EM: Round [135] log likelihood: -1938.542204
EM: Round [136] log likelihood: -1938.537800
EM: Round [137] log likelihood: -1938.533424
EM: Round [138] log likelihood: -1938.529077
EM: Round [139] log likelihood: -1938.524758
EM: Round [140] log likelihood: -1938.520468
EM: Round [141] log likelihood: -1938.516205
EM: Round [142] log likelihood: -1938.511970
EM: Round [143] log likelihood: -1938.507763
EM: Round [144] log likelihood: -1938.503582
EM: Round [145] log likelihood: -1938.499428
EM: Round [146] log likelihood: -1938.495300
EM: Round [147] log likelihood: -1938.491199
EM: Round [148] log likelihood: -1938.487123
EM: Round [149] log likelihood: -1938.483073
EM: Round [150] log likelihood: -1938.479049
EM: Round [151] log likelihood: -1938.475049
EM: Round [152] log likelihood: -1938.471074
EM: Round [153] log likelihood: -1938.467124
EM: Round [154] log likelihood: -1938.463198
EM: Round [155] log likelihood: -1938.459297
EM: Round [156] log likelihood: -1938.455419
EM: Round [157] log likelihood: -1938.451565
EM: Round [158] log likelihood: -1938.447734
EM: Round [159] log likelihood: -1938.443926
EM: Round [160] log likelihood: -1938.440141
EM: Round [161] log likelihood: -1938.436379
EM: Round [162] log likelihood: -1938.432639
EM: Round [163] log likelihood: -1938.428922
EM: Round [164] log likelihood: -1938.425226
EM: Round [165] log likelihood: -1938.421553
EM: Round [166] log likelihood: -1938.417901
EM: Round [167] log likelihood: -1938.414270
EM: Round [168] log likelihood: -1938.410661
EM: Round [169] log likelihood: -1938.407073
EM: Round [170] log likelihood: -1938.403505
EM: Round [171] log likelihood: -1938.399958
EM: Round [172] log likelihood: -1938.396432
EM: Round [173] log likelihood: -1938.392926
EM: Round [174] log likelihood: -1938.389440
EM: Round [175] log likelihood: -1938.385973
EM: Round [176] log likelihood: -1938.382527
EM: Round [177] log likelihood: -1938.379100
EM: Round [178] log likelihood: -1938.375692
EM: Round [179] log likelihood: -1938.372303
EM: Round [180] log likelihood: -1938.368934
EM: Round [181] log likelihood: -1938.365583
EM: Round [182] log likelihood: -1938.362251
EM: Round [183] log likelihood: -1938.358937
EM: Round [184] log likelihood: -1938.355642
EM: Round [185] log likelihood: -1938.352364
EM: Round [186] log likelihood: -1938.349105
EM: Round [187] log likelihood: -1938.345864
EM: Round [188] log likelihood: -1938.342640
EM: Round [189] log likelihood: -1938.339434
EM: Round [190] log likelihood: -1938.336245
EM: Round [191] log likelihood: -1938.333074
EM: Round [192] log likelihood: -1938.329920
EM: Round [193] log likelihood: -1938.326782
EM: Round [194] log likelihood: -1938.323661
EM: Round [195] log likelihood: -1938.320557
EM: Round [196] log likelihood: -1938.317470
EM: Round [197] log likelihood: -1938.314399
EM: Round [198] log likelihood: -1938.311344
EM: Round [199] log likelihood: -1938.308305
EM: Round [200] log likelihood: -1938.305282
EM: Round [201] log likelihood: -1938.302276
EM: Round [202] log likelihood: -1938.299284
EM: Round [203] log likelihood: -1938.296309
EM: Round [204] log likelihood: -1938.293348
EM: Round [205] log likelihood: -1938.290404
EM: Round [206] log likelihood: -1938.287474
EM: Round [207] log likelihood: -1938.284559
EM: Round [208] log likelihood: -1938.281660
EM: Round [209] log likelihood: -1938.278775
EM: Round [210] log likelihood: -1938.275905
EM: Round [211] log likelihood: -1938.273049
EM: Round [212] log likelihood: -1938.270209
EM: Round [213] log likelihood: -1938.267382
EM: Round [214] log likelihood: -1938.264570
EM: Round [215] log likelihood: -1938.261772
EM: Round [216] log likelihood: -1938.258987
EM: Round [217] log likelihood: -1938.256217
EM: Round [218] log likelihood: -1938.253461
EM: Round [219] log likelihood: -1938.250718
EM: Round [220] log likelihood: -1938.247989
EM: Round [221] log likelihood: -1938.245274
EM: Round [222] log likelihood: -1938.242572
EM: Round [223] log likelihood: -1938.239883
EM: Round [224] log likelihood: -1938.237207
EM: Round [225] log likelihood: -1938.234545
EM: Round [226] log likelihood: -1938.231895
EM: Round [227] log likelihood: -1938.229259
EM: Round [228] log likelihood: -1938.226635
EM: Round [229] log likelihood: -1938.224024
EM: Round [230] log likelihood: -1938.221425
EM: Round [231] log likelihood: -1938.218839
EM: Round [232] log likelihood: -1938.216266
EM: Round [233] log likelihood: -1938.213705
EM: Round [234] log likelihood: -1938.211156
EM: Round [235] log likelihood: -1938.208619
EM: Round [236] log likelihood: -1938.206094
EM: Round [237] log likelihood: -1938.203582
EM: Round [238] log likelihood: -1938.201081
EM: Round [239] log likelihood: -1938.198592
EM: Round [240] log likelihood: -1938.196115
EM: Round [241] log likelihood: -1938.193649
EM: Round [242] log likelihood: -1938.191195
EM: Round [243] log likelihood: -1938.188752
EM: Round [244] log likelihood: -1938.186321
EM: Round [245] log likelihood: -1938.183901
EM: Round [246] log likelihood: -1938.181493
EM: Round [247] log likelihood: -1938.179095
EM: Round [248] log likelihood: -1938.176709
EM: Round [249] log likelihood: -1938.174333
EM: Round [250] log likelihood: -1938.171969
EM: Round [251] log likelihood: -1938.169615
EM: Round [252] log likelihood: -1938.167272
EM: Round [253] log likelihood: -1938.164940
EM: Round [254] log likelihood: -1938.162619
EM: Round [255] log likelihood: -1938.160308
EM: Round [256] log likelihood: -1938.158007
EM: Round [257] log likelihood: -1938.155717
EM: Round [258] log likelihood: -1938.153438
EM: Round [259] log likelihood: -1938.151168
EM: Round [260] log likelihood: -1938.148909
EM: Round [261] log likelihood: -1938.146660
EM: Round [262] log likelihood: -1938.144421
EM: Round [263] log likelihood: -1938.142192
EM: Round [264] log likelihood: -1938.139972
EM: Round [265] log likelihood: -1938.137763
EM: Round [266] log likelihood: -1938.135564
EM: Round [267] log likelihood: -1938.133374
EM: Round [268] log likelihood: -1938.131194
EM: Round [269] log likelihood: -1938.129023
EM: Round [270] log likelihood: -1938.126862
EM: Round [271] log likelihood: -1938.124711
EM: Round [272] log likelihood: -1938.122569
EM: Round [273] log likelihood: -1938.120436
EM: Round [274] log likelihood: -1938.118313
EM: Round [275] log likelihood: -1938.116198
EM: Round [276] log likelihood: -1938.114093
EM: Round [277] log likelihood: -1938.111998
EM: Round [278] log likelihood: -1938.109911
EM: Round [279] log likelihood: -1938.107833
EM: Round [280] log likelihood: -1938.105764
EM: Round [281] log likelihood: -1938.103704
EM: Round [282] log likelihood: -1938.101653
EM: Round [283] log likelihood: -1938.099610
EM: Round [284] log likelihood: -1938.097577
EM: Round [285] log likelihood: -1938.095552
EM: Round [286] log likelihood: -1938.093535
EM: Round [287] log likelihood: -1938.091528
EM: Round [288] log likelihood: -1938.089528
EM: Round [289] log likelihood: -1938.087537
EM: Round [290] log likelihood: -1938.085555
EM: Round [291] log likelihood: -1938.083581
EM: Round [292] log likelihood: -1938.081615
EM: Round [293] log likelihood: -1938.079657
EM: Round [294] log likelihood: -1938.077708
EM: Round [295] log likelihood: -1938.075766
EM: Round [296] log likelihood: -1938.073833
EM: Round [297] log likelihood: -1938.071908
EM: Round [298] log likelihood: -1938.069991
EM: Round [299] log likelihood: -1938.068082
EM: Round [300] log likelihood: -1938.066180
EM: Round [301] log likelihood: -1938.064287
EM: Round [302] log likelihood: -1938.062401
EM: Round [303] log likelihood: -1938.060523
EM: Round [304] log likelihood: -1938.058653
EM: Round [305] log likelihood: -1938.056791
EM: Round [306] log likelihood: -1938.054936
EM: Round [307] log likelihood: -1938.053088
EM: Round [308] log likelihood: -1938.051249
EM: Round [309] log likelihood: -1938.049416
EM: Round [310] log likelihood: -1938.047591
EM: Round [311] log likelihood: -1938.045774
EM: Round [312] log likelihood: -1938.043964
EM: Round [313] log likelihood: -1938.042161
EM: Round [314] log likelihood: -1938.040365
EM: Round [315] log likelihood: -1938.038577
EM: Round [316] log likelihood: -1938.036796
EM: Round [317] log likelihood: -1938.035022
EM: Round [318] log likelihood: -1938.033255
EM: Round [319] log likelihood: -1938.031495
EM: Round [320] log likelihood: -1938.029742
EM: Round [321] log likelihood: -1938.027996
EM: Round [322] log likelihood: -1938.026257
EM: Round [323] log likelihood: -1938.024525
EM: Round [324] log likelihood: -1938.022800
EM: Round [325] log likelihood: -1938.021082
EM: Round [326] log likelihood: -1938.019370
EM: Round [327] log likelihood: -1938.017665
EM: Round [328] log likelihood: -1938.015967
EM: Round [329] log likelihood: -1938.014276
EM: Round [330] log likelihood: -1938.012591
EM: Round [331] log likelihood: -1938.010913
EM: Round [332] log likelihood: -1938.009241
EM: Round [333] log likelihood: -1938.007576
EM: Round [334] log likelihood: -1938.005917
EM: Round [335] log likelihood: -1938.004265
EM: Round [336] log likelihood: -1938.002619
EM: Round [337] log likelihood: -1938.000980
EM: Round [338] log likelihood: -1937.999347
EM: Round [339] log likelihood: -1937.997720
EM: Round [340] log likelihood: -1937.996099
EM: Round [341] log likelihood: -1937.994485
EM: Round [342] log likelihood: -1937.992877
EM: Round [343] log likelihood: -1937.991275
EM: Round [344] log likelihood: -1937.989679
EM: Round [345] log likelihood: -1937.988090
EM: Round [346] log likelihood: -1937.986506
EM: Round [347] log likelihood: -1937.984929
EM: Round [348] log likelihood: -1937.983357
EM: Round [349] log likelihood: -1937.981792
EM: Round [350] log likelihood: -1937.980232
EM: Round [351] log likelihood: -1937.978678
EM: Round [352] log likelihood: -1937.977130
EM: Round [353] log likelihood: -1937.975588
EM: Round [354] log likelihood: -1937.974052
EM: Round [355] log likelihood: -1937.972522
EM: Round [356] log likelihood: -1937.970997
EM: Round [357] log likelihood: -1937.969478
EM: Round [358] log likelihood: -1937.967965
EM: Round [359] log likelihood: -1937.966457
EM: Round [360] log likelihood: -1937.964956
EM: Round [361] log likelihood: -1937.963459
EM: Round [362] log likelihood: -1937.961969
EM: Round [363] log likelihood: -1937.960483
EM: Round [364] log likelihood: -1937.959004
EM: Round [365] log likelihood: -1937.957529
EM: Round [366] log likelihood: -1937.956061
EM: Round [367] log likelihood: -1937.954597
EM: Round [368] log likelihood: -1937.953140
EM: Round [369] log likelihood: -1937.951687
EM: Round [370] log likelihood: -1937.950240
EM: Round [371] log likelihood: -1937.948798
EM: Round [372] log likelihood: -1937.947362
EM: Round [373] log likelihood: -1937.945930
EM: Round [374] log likelihood: -1937.944504
EM: Round [375] log likelihood: -1937.943083
EM: Round [376] log likelihood: -1937.941668
EM: Round [377] log likelihood: -1937.940257
EM: Round [378] log likelihood: -1937.938852
EM: Round [379] log likelihood: -1937.937452
EM: Round [380] log likelihood: -1937.936057
EM: Round [381] log likelihood: -1937.934667
EM: Round [382] log likelihood: -1937.933281
EM: Round [383] log likelihood: -1937.931901
EM: Round [384] log likelihood: -1937.930526
EM: Round [385] log likelihood: -1937.929156
EM: Round [386] log likelihood: -1937.927791
EM: Round [387] log likelihood: -1937.926431
EM: Round [388] log likelihood: -1937.925075
EM: Round [389] log likelihood: -1937.923725
EM: Round [390] log likelihood: -1937.922379
EM: Round [391] log likelihood: -1937.921038
EM: Round [392] log likelihood: -1937.919702
EM: Round [393] log likelihood: -1937.918371
EM: Round [394] log likelihood: -1937.917044
EM: Round [395] log likelihood: -1937.915723
EM: Round [396] log likelihood: -1937.914405
EM: Round [397] log likelihood: -1937.913093
EM: Round [398] log likelihood: -1937.911785
EM: Round [399] log likelihood: -1937.910482
EM: Round [400] log likelihood: -1937.909183
EM: Round [401] log likelihood: -1937.907889
EM: Round [402] log likelihood: -1937.906600
EM: Round [403] log likelihood: -1937.905315
EM: Round [404] log likelihood: -1937.904035
EM: Round [405] log likelihood: -1937.902759
EM: Round [406] log likelihood: -1937.901487
EM: Round [407] log likelihood: -1937.900220
EM: Round [408] log likelihood: -1937.898958
EM: Round [409] log likelihood: -1937.897700
EM: Round [410] log likelihood: -1937.896446
EM: Round [411] log likelihood: -1937.895197
EM: Round [412] log likelihood: -1937.893952
EM: Round [413] log likelihood: -1937.892711
EM: Round [414] log likelihood: -1937.891475
EM: Round [415] log likelihood: -1937.890242
EM: Round [416] log likelihood: -1937.889015
EM: Round [417] log likelihood: -1937.887791
EM: Round [418] log likelihood: -1937.886572
EM: Round [419] log likelihood: -1937.885357
EM: Round [420] log likelihood: -1937.884146
EM: Round [421] log likelihood: -1937.882939
EM: Round [422] log likelihood: -1937.881736
EM: Round [423] log likelihood: -1937.880538
EM: Round [424] log likelihood: -1937.879343
EM: Round [425] log likelihood: -1937.878153
EM: Round [426] log likelihood: -1937.876967
EM: Round [427] log likelihood: -1937.875785
EM: Round [428] log likelihood: -1937.874607
EM: Round [429] log likelihood: -1937.873432
EM: Round [430] log likelihood: -1937.872262
EM: Round [431] log likelihood: -1937.871096
EM: Round [432] log likelihood: -1937.869934
EM: Round [433] log likelihood: -1937.868776
EM: Round [434] log likelihood: -1937.867621
EM: Round [435] log likelihood: -1937.866471
EM: Round [436] log likelihood: -1937.865325
EM: Round [437] log likelihood: -1937.864182
EM: Round [438] log likelihood: -1937.863043
EM: Round [439] log likelihood: -1937.861908
EM: Round [440] log likelihood: -1937.860777
EM: Round [441] log likelihood: -1937.859650
EM: Round [442] log likelihood: -1937.858526
EM: Round [443] log likelihood: -1937.857406
EM: Round [444] log likelihood: -1937.856290
EM: Round [445] log likelihood: -1937.855178
EM: Round [446] log likelihood: -1937.854070
EM: Round [447] log likelihood: -1937.852965
EM: Round [448] log likelihood: -1937.851864
EM: Round [449] log likelihood: -1937.850766
EM: Round [450] log likelihood: -1937.849672
EM: Round [451] log likelihood: -1937.848582
EM: Round [452] log likelihood: -1937.847496
EM: Round [453] log likelihood: -1937.846413
EM: Round [454] log likelihood: -1937.845333
EM: Round [455] log likelihood: -1937.844258
EM: Round [456] log likelihood: -1937.843185
EM: Round [457] log likelihood: -1937.842117
EM: Round [458] log likelihood: -1937.841051
EM: Round [459] log likelihood: -1937.839990
EM: Round [460] log likelihood: -1937.838932
EM: Round [461] log likelihood: -1937.837877
EM: Round [462] log likelihood: -1937.836826
EM: Round [463] log likelihood: -1937.835778
EM: Round [464] log likelihood: -1937.834734
EM: Round [465] log likelihood: -1937.833693
EM: Round [466] log likelihood: -1937.832655
EM: Round [467] log likelihood: -1937.831621
EM: Round [468] log likelihood: -1937.830590
EM: Round [469] log likelihood: -1937.829563
EM: Round [470] log likelihood: -1937.828539
EM: Round [471] log likelihood: -1937.827518
EM: Round [472] log likelihood: -1937.826501
EM: Round [473] log likelihood: -1937.825487
EM: Round [474] log likelihood: -1937.824476
EM: Round [475] log likelihood: -1937.823469
EM: Round [476] log likelihood: -1937.822465
EM: Round [477] log likelihood: -1937.821464
EM: Round [478] log likelihood: -1937.820466
EM: Round [479] log likelihood: -1937.819471
EM: Round [480] log likelihood: -1937.818480
EM: Round [481] log likelihood: -1937.817492
EM: Round [482] log likelihood: -1937.816507
EM: Round [483] log likelihood: -1937.815525
EM: Round [484] log likelihood: -1937.814547
EM: Round [485] log likelihood: -1937.813571
EM: Round [486] log likelihood: -1937.812599
EM: Round [487] log likelihood: -1937.811630
EM: Round [488] log likelihood: -1937.810664
EM: Round [489] log likelihood: -1937.809701
EM: Round [490] log likelihood: -1937.808741
EM: Round [491] log likelihood: -1937.807784
EM: Round [492] log likelihood: -1937.806830
EM: Round [493] log likelihood: -1937.805879
EM: Round [494] log likelihood: -1937.804932
EM: Round [495] log likelihood: -1937.803987
EM: Round [496] log likelihood: -1937.803045
EM: Round [497] log likelihood: -1937.802107
EM: Round [498] log likelihood: -1937.801171
EM: Round [499] log likelihood: -1937.800238
EM: Round [500] log likelihood: -1937.799308
EM: Round [501] log likelihood: -1937.798381
EM: Round [502] log likelihood: -1937.797457
EM: Round [503] log likelihood: -1937.796536
EM: Round [504] log likelihood: -1937.795618
EM: Round [505] log likelihood: -1937.794703
EM: Round [506] log likelihood: -1937.793790
EM: Round [507] log likelihood: -1937.792881
EM: Round [508] log likelihood: -1937.791974
EM: Round [509] log likelihood: -1937.791071
EM: Round [510] log likelihood: -1937.790170
EM: Round [511] log likelihood: -1937.789271
EM: Round [512] log likelihood: -1937.788376
EM: Round [513] log likelihood: -1937.787484
EM: Round [514] log likelihood: -1937.786594
EM: Round [515] log likelihood: -1937.785707
EM: Round [516] log likelihood: -1937.784823
EM: Round [517] log likelihood: -1937.783941
EM: Round [518] log likelihood: -1937.783063
EM: Round [519] log likelihood: -1937.782187
EM: Round [520] log likelihood: -1937.781313
EM: Round [521] log likelihood: -1937.780443
EM: Round [522] log likelihood: -1937.779575
EM: Round [523] log likelihood: -1937.778710
EM: Round [524] log likelihood: -1937.777848
EM: Round [525] log likelihood: -1937.776988
EM: Round [526] log likelihood: -1937.776131
EM: Round [527] log likelihood: -1937.775276
EM: Round [528] log likelihood: -1937.774424
EM: Round [529] log likelihood: -1937.773575
EM: Round [530] log likelihood: -1937.772729
EM: Round [531] log likelihood: -1937.771885
EM: Round [532] log likelihood: -1937.771043
EM: Round [533] log likelihood: -1937.770205
EM: Round [534] log likelihood: -1937.769368
EM: Round [535] log likelihood: -1937.768535
EM: Round [536] log likelihood: -1937.767704
EM: Round [537] log likelihood: -1937.766875
EM: Round [538] log likelihood: -1937.766049
EM: Round [539] log likelihood: -1937.765226
EM: Round [540] log likelihood: -1937.764405
EM: Round [541] log likelihood: -1937.763586
EM: Round [542] log likelihood: -1937.762770
EM: Round [543] log likelihood: -1937.761957
EM: Round [544] log likelihood: -1937.761146
EM: Round [545] log likelihood: -1937.760337
EM: Round [546] log likelihood: -1937.759531
EM: Round [547] log likelihood: -1937.758728
EM: Round [548] log likelihood: -1937.757927
EM: Round [549] log likelihood: -1937.757128
EM: Round [550] log likelihood: -1937.756332
EM: Round [551] log likelihood: -1937.755538
EM: Round [552] log likelihood: -1937.754746
EM: Round [553] log likelihood: -1937.753957
EM: Round [554] log likelihood: -1937.753170
EM: Round [555] log likelihood: -1937.752386
EM: Round [556] log likelihood: -1937.751604
EM: Round [557] log likelihood: -1937.750825
EM: Round [558] log likelihood: -1937.750047
EM: Round [559] log likelihood: -1937.749272
EM: Round [560] log likelihood: -1937.748500
EM: Round [561] log likelihood: -1937.747730
EM: Round [562] log likelihood: -1937.746962
EM: Round [563] log likelihood: -1937.746196
EM: Round [564] log likelihood: -1937.745433
EM: Round [565] log likelihood: -1937.744672
EM: Round [566] log likelihood: -1937.743913
EM: Round [567] log likelihood: -1937.743156
EM: Round [568] log likelihood: -1937.742402
EM: Round [569] log likelihood: -1937.741650
EM: Round [570] log likelihood: -1937.740900
EM: Round [571] log likelihood: -1937.740153
EM: Round [572] log likelihood: -1937.739407
EM: Round [573] log likelihood: -1937.738664
EM: Round [574] log likelihood: -1937.737924
EM: Round [575] log likelihood: -1937.737185
EM: Round [576] log likelihood: -1937.736448
EM: Round [577] log likelihood: -1937.735714
EM: Round [578] log likelihood: -1937.734982
EM: Round [579] log likelihood: -1937.734252
EM: Round [580] log likelihood: -1937.733525
EM: Round [581] log likelihood: -1937.732799
EM: Round [582] log likelihood: -1937.732075
EM: Round [583] log likelihood: -1937.731354
EM: Round [584] log likelihood: -1937.730635
EM: Round [585] log likelihood: -1937.729918
EM: Round [586] log likelihood: -1937.729203
EM: Round [587] log likelihood: -1937.728490
EM: Round [588] log likelihood: -1937.727780
EM: Round [589] log likelihood: -1937.727071
EM: Round [590] log likelihood: -1937.726364
EM: Round [591] log likelihood: -1937.725660
EM: Round [592] log likelihood: -1937.724957
EM: Round [593] log likelihood: -1937.724257
EM: Round [594] log likelihood: -1937.723559
EM: Round [595] log likelihood: -1937.722863
EM: Round [596] log likelihood: -1937.722168
EM: Round [597] log likelihood: -1937.721476
EM: Round [598] log likelihood: -1937.720786
EM: Round [599] log likelihood: -1937.720098
EM: Round [600] log likelihood: -1937.719412
EM: Round [601] log likelihood: -1937.718728
EM: Round [602] log likelihood: -1937.718046
EM: Round [603] log likelihood: -1937.717366
EM: Round [604] log likelihood: -1937.716688
EM: Round [605] log likelihood: -1937.716011
EM: Round [606] log likelihood: -1937.715337
EM: Round [607] log likelihood: -1937.714665
EM: Round [608] log likelihood: -1937.713995
EM: Round [609] log likelihood: -1937.713326
EM: Round [610] log likelihood: -1937.712660
EM: Round [611] log likelihood: -1937.711996
EM: Round [612] log likelihood: -1937.711333
EM: Round [613] log likelihood: -1937.710672
EM: Round [614] log likelihood: -1937.710014
EM: Round [615] log likelihood: -1937.709357
EM: Round [616] log likelihood: -1937.708702
EM: Round [617] log likelihood: -1937.708049
EM: Round [618] log likelihood: -1937.707398
EM: Round [619] log likelihood: -1937.706749
EM: Round [620] log likelihood: -1937.706101
EM: Round [621] log likelihood: -1937.705456
EM: Round [622] log likelihood: -1937.704812
EM: Round [623] log likelihood: -1937.704171
EM: Round [624] log likelihood: -1937.703531
EM: Round [625] log likelihood: -1937.702892
EM: Round [626] log likelihood: -1937.702256
EM: Round [627] log likelihood: -1937.701622
EM: Round [628] log likelihood: -1937.700989
EM: Round [629] log likelihood: -1937.700358
EM: Round [630] log likelihood: -1937.699729
EM: Round [631] log likelihood: -1937.699102
EM: Round [632] log likelihood: -1937.698477
EM: Round [633] log likelihood: -1937.697853
EM: Round [634] log likelihood: -1937.697231
EM: Round [635] log likelihood: -1937.696611
EM: Round [636] log likelihood: -1937.695993
EM: Round [637] log likelihood: -1937.695377
EM: Round [638] log likelihood: -1937.694762
EM: Round [639] log likelihood: -1937.694149
EM: Round [640] log likelihood: -1937.693537
EM: Round [641] log likelihood: -1937.692928
EM: Round [642] log likelihood: -1937.692320
EM: Round [643] log likelihood: -1937.691714
EM: Round [644] log likelihood: -1937.691110
EM: Round [645] log likelihood: -1937.690507
EM: Round [646] log likelihood: -1937.689906
EM: Round [647] log likelihood: -1937.689307
EM: Round [648] log likelihood: -1937.688710
EM: Round [649] log likelihood: -1937.688114
EM: Round [650] log likelihood: -1937.687520
EM: Round [651] log likelihood: -1937.686927
EM: Round [652] log likelihood: -1937.686336
EM: Round [653] log likelihood: -1937.685747
EM: Round [654] log likelihood: -1937.685160
EM: Round [655] log likelihood: -1937.684574
EM: Round [656] log likelihood: -1937.683990
EM: Round [657] log likelihood: -1937.683407
EM: Round [658] log likelihood: -1937.682827
EM: Round [659] log likelihood: -1937.682247
EM: Round [660] log likelihood: -1937.681670
EM: Round [661] log likelihood: -1937.681094
EM: Round [662] log likelihood: -1937.680520
EM: Round [663] log likelihood: -1937.679947
EM: Round [664] log likelihood: -1937.679376
EM: Round [665] log likelihood: -1937.678806
EM: Round [666] log likelihood: -1937.678238
EM: Round [667] log likelihood: -1937.677672
EM: Round [668] log likelihood: -1937.677107
EM: Round [669] log likelihood: -1937.676544
EM: Round [670] log likelihood: -1937.675982
EM: Round [671] log likelihood: -1937.675422
EM: Round [672] log likelihood: -1937.674864
EM: Round [673] log likelihood: -1937.674307
EM: Round [674] log likelihood: -1937.673752
EM: Round [675] log likelihood: -1937.673198
EM: Round [676] log likelihood: -1937.672646
EM: Round [677] log likelihood: -1937.672095
EM: Round [678] log likelihood: -1937.671546
EM: Round [679] log likelihood: -1937.670998
EM: Round [680] log likelihood: -1937.670452
EM: Round [681] log likelihood: -1937.669908
EM: Round [682] log likelihood: -1937.669365
EM: Round [683] log likelihood: -1937.668823
EM: Round [684] log likelihood: -1937.668283
EM: Round [685] log likelihood: -1937.667744
EM: Round [686] log likelihood: -1937.667207
EM: Round [687] log likelihood: -1937.666672
EM: Round [688] log likelihood: -1937.666138
EM: Round [689] log likelihood: -1937.665605
EM: Round [690] log likelihood: -1937.665074
EM: Round [691] log likelihood: -1937.664544
EM: Round [692] log likelihood: -1937.664016
EM: Round [693] log likelihood: -1937.663489
EM: Round [694] log likelihood: -1937.662964
EM: Round [695] log likelihood: -1937.662440
EM: Round [696] log likelihood: -1937.661918
EM: Round [697] log likelihood: -1937.661397
EM: Round [698] log likelihood: -1937.660877
EM: Round [699] log likelihood: -1937.660359
EM: Round [700] log likelihood: -1937.659842
EM: Round [701] log likelihood: -1937.659327
EM: Round [702] log likelihood: -1937.658813
EM: Round [703] log likelihood: -1937.658301
EM: Round [704] log likelihood: -1937.657790
EM: Round [705] log likelihood: -1937.657280
EM: Round [706] log likelihood: -1937.656772
EM: Round [707] log likelihood: -1937.656265
EM: Round [708] log likelihood: -1937.655760
EM: Round [709] log likelihood: -1937.655256
EM: Round [710] log likelihood: -1937.654753
EM: Round [711] log likelihood: -1937.654252
EM: Round [712] log likelihood: -1937.653752
EM: Round [713] log likelihood: -1937.653253
EM: Round [714] log likelihood: -1937.652756
EM: Round [715] log likelihood: -1937.652260
EM: Round [716] log likelihood: -1937.651766
EM: Round [717] log likelihood: -1937.651273
EM: Round [718] log likelihood: -1937.650781
EM: Round [719] log likelihood: -1937.650291
EM: Round [720] log likelihood: -1937.649802
EM: Round [721] log likelihood: -1937.649314
EM: Round [722] log likelihood: -1937.648827
EM: Round [723] log likelihood: -1937.648342
EM: Round [724] log likelihood: -1937.647859
EM: Round [725] log likelihood: -1937.647376
EM: Round [726] log likelihood: -1937.646895
EM: Round [727] log likelihood: -1937.646415
EM: Round [728] log likelihood: -1937.645936
EM: Round [729] log likelihood: -1937.645459
EM: Round [730] log likelihood: -1937.644983
EM: Round [731] log likelihood: -1937.644509
EM: Round [732] log likelihood: -1937.644035
EM: Round [733] log likelihood: -1937.643563
EM: Round [734] log likelihood: -1937.643092
EM: Round [735] log likelihood: -1937.642623
EM: Round [736] log likelihood: -1937.642155
EM: Round [737] log likelihood: -1937.641687
EM: Round [738] log likelihood: -1937.641222
EM: Round [739] log likelihood: -1937.640757
EM: Round [740] log likelihood: -1937.640294
EM: Round [741] log likelihood: -1937.639832
EM: Round [742] log likelihood: -1937.639371
EM: Round [743] log likelihood: -1937.638912
EM: Round [744] log likelihood: -1937.638454
EM: Round [745] log likelihood: -1937.637997
EM: Round [746] log likelihood: -1937.637541
EM: Round [747] log likelihood: -1937.637086
EM: Round [748] log likelihood: -1937.636633
EM: Round [749] log likelihood: -1937.636181
EM: Round [750] log likelihood: -1937.635730
EM: Round [751] log likelihood: -1937.635280
EM: Round [752] log likelihood: -1937.634832
EM: Round [753] log likelihood: -1937.634384
EM: Round [754] log likelihood: -1937.633938
EM: Round [755] log likelihood: -1937.633493
EM: Round [756] log likelihood: -1937.633050
EM: Round [757] log likelihood: -1937.632607
EM: Round [758] log likelihood: -1937.632166
EM: Round [759] log likelihood: -1937.631726
EM: Round [760] log likelihood: -1937.631287
EM: Round [761] log likelihood: -1937.630849
EM: Round [762] log likelihood: -1937.630412
EM: Round [763] log likelihood: -1937.629977
EM: Round [764] log likelihood: -1937.629543
EM: Round [765] log likelihood: -1937.629109
EM: Round [766] log likelihood: -1937.628677
EM: Round [767] log likelihood: -1937.628247
EM: Round [768] log likelihood: -1937.627817
EM: Round [769] log likelihood: -1937.627388
EM: Round [770] log likelihood: -1937.626961
EM: Round [771] log likelihood: -1937.626535
EM: Round [772] log likelihood: -1937.626110
EM: Round [773] log likelihood: -1937.625686
EM: Round [774] log likelihood: -1937.625263
EM: Round [775] log likelihood: -1937.624841
EM: Round [776] log likelihood: -1937.624420
EM: Round [777] log likelihood: -1937.624001
EM: Round [778] log likelihood: -1937.623583
EM: Round [779] log likelihood: -1937.623165
EM: Round [780] log likelihood: -1937.622749
EM: Round [781] log likelihood: -1937.622334
EM: Round [782] log likelihood: -1937.621920
EM: Round [783] log likelihood: -1937.621507
EM: Round [784] log likelihood: -1937.621095
EM: Round [785] log likelihood: -1937.620685
EM: Round [786] log likelihood: -1937.620275
EM: Round [787] log likelihood: -1937.619867
EM: Round [788] log likelihood: -1937.619459
EM: Round [789] log likelihood: -1937.619053
EM: Round [790] log likelihood: -1937.618648
EM: Round [791] log likelihood: -1937.618243
EM: Round [792] log likelihood: -1937.617840
EM: Round [793] log likelihood: -1937.617438
EM: Round [794] log likelihood: -1937.617037
EM: Round [795] log likelihood: -1937.616637
EM: Round [796] log likelihood: -1937.616238
EM: Round [797] log likelihood: -1937.615840
EM: Round [798] log likelihood: -1937.615444
EM: Round [799] log likelihood: -1937.615048
EM: Round [800] log likelihood: -1937.614653
EM: Round [801] log likelihood: -1937.614259
EM: Round [802] log likelihood: -1937.613867
EM: Round [803] log likelihood: -1937.613475
EM: Round [804] log likelihood: -1937.613085
EM: Round [805] log likelihood: -1937.612695
EM: Round [806] log likelihood: -1937.612307
EM: Round [807] log likelihood: -1937.611919
EM: Round [808] log likelihood: -1937.611533
EM: Round [809] log likelihood: -1937.611147
EM: Round [810] log likelihood: -1937.610763
EM: Round [811] log likelihood: -1937.610379
EM: Round [812] log likelihood: -1937.609997
EM: Round [813] log likelihood: -1937.609615
EM: Round [814] log likelihood: -1937.609235
EM: Round [815] log likelihood: -1937.608855
EM: Round [816] log likelihood: -1937.608477
EM: Round [817] log likelihood: -1937.608099
EM: Round [818] log likelihood: -1937.607723
EM: Round [819] log likelihood: -1937.607347
EM: Round [820] log likelihood: -1937.606973
EM: Round [821] log likelihood: -1937.606599
EM: Round [822] log likelihood: -1937.606227
EM: Round [823] log likelihood: -1937.605855
EM: Round [824] log likelihood: -1937.605484
EM: Round [825] log likelihood: -1937.605115
EM: Round [826] log likelihood: -1937.604746
EM: Round [827] log likelihood: -1937.604378
EM: Round [828] log likelihood: -1937.604011
EM: Round [829] log likelihood: -1937.603646
EM: Round [830] log likelihood: -1937.603281
EM: Round [831] log likelihood: -1937.602917
EM: Round [832] log likelihood: -1937.602554
EM: Round [833] log likelihood: -1937.602192
EM: Round [834] log likelihood: -1937.601831
EM: Round [835] log likelihood: -1937.601470
EM: Round [836] log likelihood: -1937.601111
EM: Round [837] log likelihood: -1937.600753
EM: Round [838] log likelihood: -1937.600395
EM: Round [839] log likelihood: -1937.600039
EM: Round [840] log likelihood: -1937.599683
EM: Round [841] log likelihood: -1937.599329
EM: Round [842] log likelihood: -1937.598975
EM: Round [843] log likelihood: -1937.598622
EM: Round [844] log likelihood: -1937.598271
EM: Round [845] log likelihood: -1937.597920
EM: Round [846] log likelihood: -1937.597570
EM: Round [847] log likelihood: -1937.597220
EM: Round [848] log likelihood: -1937.596872
EM: Round [849] log likelihood: -1937.596525
EM: Round [850] log likelihood: -1937.596178
EM: Round [851] log likelihood: -1937.595833
EM: Round [852] log likelihood: -1937.595488
EM: Round [853] log likelihood: -1937.595144
EM: Round [854] log likelihood: -1937.594802
EM: Round [855] log likelihood: -1937.594460
EM: Round [856] log likelihood: -1937.594118
EM: Round [857] log likelihood: -1937.593778
EM: Round [858] log likelihood: -1937.593439
EM: Round [859] log likelihood: -1937.593100
EM: Round [860] log likelihood: -1937.592763
EM: Round [861] log likelihood: -1937.592426
EM: Round [862] log likelihood: -1937.592090
EM: Round [863] log likelihood: -1937.591755
EM: Round [864] log likelihood: -1937.591421
EM: Round [865] log likelihood: -1937.591088
EM: Round [866] log likelihood: -1937.590755
EM: Round [867] log likelihood: -1937.590424
EM: Round [868] log likelihood: -1937.590093
EM: Round [869] log likelihood: -1937.589763
EM: Round [870] log likelihood: -1937.589434
EM: Round [871] log likelihood: -1937.589106
EM: Round [872] log likelihood: -1937.588779
EM: Round [873] log likelihood: -1937.588452
EM: Round [874] log likelihood: -1937.588126
EM: Round [875] log likelihood: -1937.587802
EM: Round [876] log likelihood: -1937.587478
EM: Round [877] log likelihood: -1937.587154
EM: Round [878] log likelihood: -1937.586832
EM: Round [879] log likelihood: -1937.586511
EM: Round [880] log likelihood: -1937.586190
EM: Round [881] log likelihood: -1937.585870
EM: Round [882] log likelihood: -1937.585551
EM: Round [883] log likelihood: -1937.585233
EM: Round [884] log likelihood: -1937.584915
EM: Round [885] log likelihood: -1937.584599
EM: Round [886] log likelihood: -1937.584283
EM: Round [887] log likelihood: -1937.583968
EM: Round [888] log likelihood: -1937.583654
EM: Round [889] log likelihood: -1937.583340
EM: Round [890] log likelihood: -1937.583028
EM: Round [891] log likelihood: -1937.582716
EM: Round [892] log likelihood: -1937.582405
EM: Round [893] log likelihood: -1937.582095
EM: Round [894] log likelihood: -1937.581785
EM: Round [895] log likelihood: -1937.581476
EM: Round [896] log likelihood: -1937.581169
EM: Round [897] log likelihood: -1937.580862
EM: Round [898] log likelihood: -1937.580555
EM: Round [899] log likelihood: -1937.580250
EM: Round [900] log likelihood: -1937.579945
EM: Round [901] log likelihood: -1937.579641
EM: Round [902] log likelihood: -1937.579338
EM: Round [903] log likelihood: -1937.579035
EM: Round [904] log likelihood: -1937.578734
EM: Round [905] log likelihood: -1937.578433
EM: Round [906] log likelihood: -1937.578133
EM: Round [907] log likelihood: -1937.577833
EM: Round [908] log likelihood: -1937.577535
EM: Round [909] log likelihood: -1937.577237
EM: Round [910] log likelihood: -1937.576940
EM: Round [911] log likelihood: -1937.576643
EM: Round [912] log likelihood: -1937.576348
EM: Round [913] log likelihood: -1937.576053
EM: Round [914] log likelihood: -1937.575759
EM: Round [915] log likelihood: -1937.575466
EM: Round [916] log likelihood: -1937.575173
EM: Round [917] log likelihood: -1937.574881
EM: Round [918] log likelihood: -1937.574590
EM: Round [919] log likelihood: -1937.574300
EM: Round [920] log likelihood: -1937.574010
EM: Round [921] log likelihood: -1937.573721
EM: Round [922] log likelihood: -1937.573433
EM: Round [923] log likelihood: -1937.573145
EM: Round [924] log likelihood: -1937.572859
EM: Round [925] log likelihood: -1937.572573
EM: Round [926] log likelihood: -1937.572287
EM: Round [927] log likelihood: -1937.572003
EM: Round [928] log likelihood: -1937.571719
EM: Round [929] log likelihood: -1937.571436
EM: Round [930] log likelihood: -1937.571153
EM: Round [931] log likelihood: -1937.570871
EM: Round [932] log likelihood: -1937.570590
EM: Round [933] log likelihood: -1937.570310
EM: Round [934] log likelihood: -1937.570030
EM: Round [935] log likelihood: -1937.569752
EM: Round [936] log likelihood: -1937.569473
EM: Round [937] log likelihood: -1937.569196
EM: Round [938] log likelihood: -1937.568919
EM: Round [939] log likelihood: -1937.568643
EM: Round [940] log likelihood: -1937.568368
EM: Round [941] log likelihood: -1937.568093
EM: Round [942] log likelihood: -1937.567819
EM: Round [943] log likelihood: -1937.567545
EM: Round [944] log likelihood: -1937.567273
EM: Round [945] log likelihood: -1937.567001
EM: Round [946] log likelihood: -1937.566730
EM: Round [947] log likelihood: -1937.566459
EM: Round [948] log likelihood: -1937.566189
EM: Round [949] log likelihood: -1937.565920
EM: Round [950] log likelihood: -1937.565651
EM: Round [951] log likelihood: -1937.565383
EM: Round [952] log likelihood: -1937.565116
EM: Round [953] log likelihood: -1937.564849
EM: Round [954] log likelihood: -1937.564584
EM: Round [955] log likelihood: -1937.564318
EM: Round [956] log likelihood: -1937.564054
EM: Round [957] log likelihood: -1937.563790
EM: Round [958] log likelihood: -1937.563527
EM: Round [959] log likelihood: -1937.563264
EM: Round [960] log likelihood: -1937.563002
EM: Round [961] log likelihood: -1937.562741
EM: Round [962] log likelihood: -1937.562480
EM: Round [963] log likelihood: -1937.562220
EM: Round [964] log likelihood: -1937.561961
EM: Round [965] log likelihood: -1937.561702
EM: Round [966] log likelihood: -1937.561444
EM: Round [967] log likelihood: -1937.561187
EM: Round [968] log likelihood: -1937.560930
EM: Round [969] log likelihood: -1937.560674
EM: Round [970] log likelihood: -1937.560418
EM: Round [971] log likelihood: -1937.560163
EM: Round [972] log likelihood: -1937.559909
EM: Round [973] log likelihood: -1937.559656
EM: Round [974] log likelihood: -1937.559403
EM: Round [975] log likelihood: -1937.559150
EM: Round [976] log likelihood: -1937.558899
EM: Round [977] log likelihood: -1937.558648
EM: Round [978] log likelihood: -1937.558397
EM: Round [979] log likelihood: -1937.558147
EM: Round [980] log likelihood: -1937.557898
EM: Round [981] log likelihood: -1937.557650
EM: Round [982] log likelihood: -1937.557402
EM: Round [983] log likelihood: -1937.557154
EM: Round [984] log likelihood: -1937.556908
EM: Round [985] log likelihood: -1937.556662
EM: Round [986] log likelihood: -1937.556416
EM: Round [987] log likelihood: -1937.556171
EM: Round [988] log likelihood: -1937.555927
EM: Round [989] log likelihood: -1937.555683
EM: Round [990] log likelihood: -1937.555440
EM: Round [991] log likelihood: -1937.555198
EM: Round [992] log likelihood: -1937.554956
EM: Round [993] log likelihood: -1937.554715
EM: Round [994] log likelihood: -1937.554474
EM: Round [995] log likelihood: -1937.554234
EM: Round [996] log likelihood: -1937.553994
EM: Round [997] log likelihood: -1937.553755
EM: Round [998] log likelihood: -1937.553517
EM: Round [999] log likelihood: -1937.553279
EM: Round [1000] log likelihood: -1937.553042
EM: Round [1001] log likelihood: -1937.552806
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_EM_runner.pl /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.fusion_preds.coalesced.summary > /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/init_EM_adj_counts.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/filter_fusions_by_frag_thresholds.pl --min_junction_reads 0 --min_sum_frags 1 --min_novel_junction_support 3 --min_spanning_frags_only 5 --fusion_preds /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj --require_LDAS 1 > /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/filter_fusions_by_frag_thresholds.pl --min_junction_reads 0 --min_sum_frags 1 --min_novel_junction_support 3 --min_spanning_frags_only 5 --fusion_preds /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj --require_LDAS 1 > /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/filter_by_frag_threshs.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/column_extractions.pl /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.fusion_preds.coalesced.summary LeftGene,RightGene,JunctionReads > /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.fusion_preds.coalesced.summary.fusion_junction_read_accs
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/column_extractions.pl /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.fusion_preds.coalesced.summary LeftGene,RightGene,JunctionReads > /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.fusion_preds.coalesced.summary.fusion_junction_read_accs
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/prep_igv_extract_junc_reads.ok
Running: bash -c "set -eof pipefail; /usr/local/src/STAR-Fusion/FusionInspector/util/retrieve_fusion_junction_reads_by_accession.pl /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.fusion_preds.coalesced.summary.fusion_junction_read_accs /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam | samtools view -@ 8 -bT /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.fa - | samtools sort -@ 8 - -o /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.junction_reads.bam"
[bam_sort_core] merging from 0 files and 8 in-memory blocks...
Execution Time = 0.00 minutes. CMD: bash -c "set -eof pipefail; /usr/local/src/STAR-Fusion/FusionInspector/util/retrieve_fusion_junction_reads_by_accession.pl /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.fusion_preds.coalesced.summary.fusion_junction_read_accs /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam | samtools view -@ 8 -bT /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.fa - | samtools sort -@ 8 - -o /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.junction_reads.bam"
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/prep_igv_junc_reads_bam.ok
Running: samtools index /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.junction_reads.bam
Execution Time = 0.00 minutes. CMD: samtools index /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.junction_reads.bam
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/samtools_idx_junc_reads_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_pair_to_bed.pl /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.junction_reads.bam > /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.junction_reads.bam.bed
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_pair_to_bed.pl /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.junction_reads.bam > /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.junction_reads.bam.bed
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/tih_rna_sample_00729_B23MVV7LT4_1.junction_reads.bam.bam_to_bed.ok
Running: sort -k1,1 -k2,2n /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.junction_reads.bam.bed > /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.junction_reads.bam.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: sort -k1,1 -k2,2n /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.junction_reads.bam.bed > /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.junction_reads.bam.bed.sorted.bed
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/tih_rna_sample_00729_B23MVV7LT4_1.junction_reads.bam.bedsort.ok
Running: bgzip -f /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.junction_reads.bam.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: bgzip -f /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.junction_reads.bam.bed.sorted.bed
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/tih_rna_sample_00729_B23MVV7LT4_1.junction_reads.bam.bgzip.ok
Running: tabix -p bed /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.junction_reads.bam.bed.sorted.bed.gz
Execution Time = 0.00 minutes. CMD: tabix -p bed /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.junction_reads.bam.bed.sorted.bed.gz
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/tih_rna_sample_00729_B23MVV7LT4_1.junction_reads.bam.tabix.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/column_extractions.pl /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.fusion_preds.coalesced.summary LeftGene,RightGene,SpanningFrags > /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.fusion_preds.coalesced.summary.fusion_spanning_read_accs
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/column_extractions.pl /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.fusion_preds.coalesced.summary LeftGene,RightGene,SpanningFrags > /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.fusion_preds.coalesced.summary.fusion_spanning_read_accs
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/span_reads_acc.ok
Running: samtools view -H /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.star.cSorted.dupsMarked.bam -b -o /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.spanning_reads.bam
Execution Time = 0.00 minutes. CMD: samtools view -H /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.star.cSorted.dupsMarked.bam -b -o /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.spanning_reads.bam
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/init_spanning_reads_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/retrieve_fusion_spanning_reads_by_accession.pl /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.fusion_preds.coalesced.summary.fusion_spanning_read_accs /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.star.cSorted.dupsMarked.bam.fusion_span_reads.sam | samtools view -@ 8 -bT /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.fa - | samtools sort -@ 8 - -o /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.spanning_reads.bam || :
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/retrieve_fusion_spanning_reads_by_accession.pl /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.fusion_preds.coalesced.summary.fusion_spanning_read_accs /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.star.cSorted.dupsMarked.bam.fusion_span_reads.sam | samtools view -@ 8 -bT /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.fa - | samtools sort -@ 8 - -o /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.spanning_reads.bam || :
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/prep_spanning_reads.ok
Running: samtools index /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.spanning_reads.bam
Execution Time = 0.00 minutes. CMD: samtools index /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.spanning_reads.bam
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/samtools_index_span_reads_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_pair_to_bed.pl /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.spanning_reads.bam > /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.spanning_reads.bam.bed
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_pair_to_bed.pl /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.spanning_reads.bam > /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.spanning_reads.bam.bed
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/tih_rna_sample_00729_B23MVV7LT4_1.spanning_reads.bam.bam_to_bed.ok
Running: sort -k1,1 -k2,2n /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.spanning_reads.bam.bed > /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.spanning_reads.bam.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: sort -k1,1 -k2,2n /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.spanning_reads.bam.bed > /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.spanning_reads.bam.bed.sorted.bed
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/tih_rna_sample_00729_B23MVV7LT4_1.spanning_reads.bam.bedsort.ok
Running: bgzip -f /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.spanning_reads.bam.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: bgzip -f /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.spanning_reads.bam.bed.sorted.bed
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/tih_rna_sample_00729_B23MVV7LT4_1.spanning_reads.bam.bgzip.ok
Running: tabix -p bed /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.spanning_reads.bam.bed.sorted.bed.gz
Execution Time = 0.00 minutes. CMD: tabix -p bed /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.spanning_reads.bam.bed.sorted.bed.gz
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/tih_rna_sample_00729_B23MVV7LT4_1.spanning_reads.bam.tabix.ok
Running: cp /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.star.cSorted.dupsMarked.bam /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.consolidated.bam
Execution Time = 0.00 minutes. CMD: cp /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.star.cSorted.dupsMarked.bam /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.consolidated.bam
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/cp_consol_bam.ok
Running: samtools index /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.consolidated.bam
Execution Time = 0.02 minutes. CMD: samtools index /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.consolidated.bam
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/index_consol_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_to_frag_coords.pl --sam /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.consolidated.bam --max_insert_size 10000000
-extracting read coordinates from /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.consolidated.bam into /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.consolidated.bam.read_coords
CMD: touch /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.consolidated.bam.read_coords.ok
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k2,2 -k4,4n /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.consolidated.bam.read_coords > /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.consolidated.bam.read_coords.sort_by_readname
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k3,3n /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.consolidated.bam.frag_coords > /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.consolidated.bam.frag_coords.coord_sorted
Execution Time = 0.56 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_to_frag_coords.pl --sam /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.consolidated.bam --max_insert_size 10000000
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/prep_igv_sam_frag_coordss.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_summary_to_igv_JuncSpan_fmt.pl /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.fusion_preds.coalesced.summary /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.consolidated.bam.frag_coords > /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.igv.FusionJuncSpan
Execution Time = 0.01 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_summary_to_igv_JuncSpan_fmt.pl /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.fusion_preds.coalesced.summary /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.consolidated.bam.frag_coords > /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.igv.FusionJuncSpan
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/prep_igv_juncspan_fmt.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/get_pfam_domain_info.pl --finspector_gtf /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.gtf --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.igv.Pfam.gff3
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/get_pfam_domain_info.pl --finspector_gtf /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.gtf --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.igv.Pfam.gff3
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/prep_igv_pfam_gff3.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/transcript_gff3_to_bed.pl /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.igv.Pfam.gff3 > /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.igv.Pfam.bed
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/transcript_gff3_to_bed.pl /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.igv.Pfam.gff3 > /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.igv.Pfam.bed
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/prep_igv_pfam_bed.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/get_seq_similar_region_FI_coordinates.pl --finspector_gtf /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.gtf --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.igv.seqsimilar.gff3
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/get_seq_similar_region_FI_coordinates.pl --finspector_gtf /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.gtf --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.igv.seqsimilar.gff3
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/prep_igv_seqsim_gff3.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/transcript_gff3_to_bed.pl /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.igv.seqsimilar.gff3 > /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.igv.seqsimilar.bed
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/transcript_gff3_to_bed.pl /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.igv.seqsimilar.gff3 > /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.igv.seqsimilar.bed
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/prep_igv_seqsim_bed.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/append_breakpoint_junction_info_via_FI_contigs.pl /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.fa > /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/append_breakpoint_junction_info_via_FI_contigs.pl /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.fa > /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/add_splice_info.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/../FusionFilter/blast_and_promiscuity_filter.pl --fusion_preds /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --out_prefix /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1 --genome_lib_dir ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 50
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --genome_lib_dir ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter --genome_lib_dir ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 50
CMD: cp /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter.post_promisc_filter /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.post_blast_and_promiscuity_filter
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/../FusionFilter/blast_and_promiscuity_filter.pl --fusion_preds /tmp/nxf.2slL2KydIu/fi_workdir/tih_rna_sample_00729_B23MVV7LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --out_prefix /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1 --genome_lib_dir ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 50
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/blast_filter.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/../FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.post_blast_and_promiscuity_filter --genome_lib_dir /tmp/nxf.2slL2KydIu/ctat_genome_lib_build_dir
-done, see /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/../FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.post_blast_and_promiscuity_filter --genome_lib_dir /tmp/nxf.2slL2KydIu/ctat_genome_lib_build_dir
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/annot_filter.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_EM_runner.pl /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass > /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj
EM: Starting log likelihood: -1672.247484
EM: Round [1] log likelihood: -1672.216206
EM: Round [2] log likelihood: -1672.201154
EM: Round [3] log likelihood: -1672.186405
EM: Round [4] log likelihood: -1672.171902
EM: Round [5] log likelihood: -1672.157639
EM: Round [6] log likelihood: -1672.143607
EM: Round [7] log likelihood: -1672.129800
EM: Round [8] log likelihood: -1672.116212
EM: Round [9] log likelihood: -1672.102835
EM: Round [10] log likelihood: -1672.089664
EM: Round [11] log likelihood: -1672.076694
EM: Round [12] log likelihood: -1672.063918
EM: Round [13] log likelihood: -1672.051331
EM: Round [14] log likelihood: -1672.038929
EM: Round [15] log likelihood: -1672.026705
EM: Round [16] log likelihood: -1672.014656
EM: Round [17] log likelihood: -1672.002777
EM: Round [18] log likelihood: -1671.991063
EM: Round [19] log likelihood: -1671.979511
EM: Round [20] log likelihood: -1671.968116
EM: Round [21] log likelihood: -1671.956875
EM: Round [22] log likelihood: -1671.945783
EM: Round [23] log likelihood: -1671.934838
EM: Round [24] log likelihood: -1671.924035
EM: Round [25] log likelihood: -1671.913371
EM: Round [26] log likelihood: -1671.902843
EM: Round [27] log likelihood: -1671.892448
EM: Round [28] log likelihood: -1671.882183
EM: Round [29] log likelihood: -1671.872045
EM: Round [30] log likelihood: -1671.862031
EM: Round [31] log likelihood: -1671.852138
EM: Round [32] log likelihood: -1671.842365
EM: Round [33] log likelihood: -1671.832707
EM: Round [34] log likelihood: -1671.823163
EM: Round [35] log likelihood: -1671.813730
EM: Round [36] log likelihood: -1671.804406
EM: Round [37] log likelihood: -1671.795189
EM: Round [38] log likelihood: -1671.786076
EM: Round [39] log likelihood: -1671.777066
EM: Round [40] log likelihood: -1671.768156
EM: Round [41] log likelihood: -1671.759344
EM: Round [42] log likelihood: -1671.750629
EM: Round [43] log likelihood: -1671.742009
EM: Round [44] log likelihood: -1671.733481
EM: Round [45] log likelihood: -1671.725044
EM: Round [46] log likelihood: -1671.716696
EM: Round [47] log likelihood: -1671.708436
EM: Round [48] log likelihood: -1671.700262
EM: Round [49] log likelihood: -1671.692172
EM: Round [50] log likelihood: -1671.684165
EM: Round [51] log likelihood: -1671.676239
EM: Round [52] log likelihood: -1671.668393
EM: Round [53] log likelihood: -1671.660625
EM: Round [54] log likelihood: -1671.652935
EM: Round [55] log likelihood: -1671.645320
EM: Round [56] log likelihood: -1671.637780
EM: Round [57] log likelihood: -1671.630313
EM: Round [58] log likelihood: -1671.622917
EM: Round [59] log likelihood: -1671.615592
EM: Round [60] log likelihood: -1671.608337
EM: Round [61] log likelihood: -1671.601150
EM: Round [62] log likelihood: -1671.594030
EM: Round [63] log likelihood: -1671.586977
EM: Round [64] log likelihood: -1671.579988
EM: Round [65] log likelihood: -1671.573064
EM: Round [66] log likelihood: -1671.566202
EM: Round [67] log likelihood: -1671.559402
EM: Round [68] log likelihood: -1671.552663
EM: Round [69] log likelihood: -1671.545985
EM: Round [70] log likelihood: -1671.539365
EM: Round [71] log likelihood: -1671.532803
EM: Round [72] log likelihood: -1671.526299
EM: Round [73] log likelihood: -1671.519852
EM: Round [74] log likelihood: -1671.513459
EM: Round [75] log likelihood: -1671.507122
EM: Round [76] log likelihood: -1671.500839
EM: Round [77] log likelihood: -1671.494609
EM: Round [78] log likelihood: -1671.488431
EM: Round [79] log likelihood: -1671.482304
EM: Round [80] log likelihood: -1671.476229
EM: Round [81] log likelihood: -1671.470204
EM: Round [82] log likelihood: -1671.464228
EM: Round [83] log likelihood: -1671.458301
EM: Round [84] log likelihood: -1671.452422
EM: Round [85] log likelihood: -1671.446591
EM: Round [86] log likelihood: -1671.440806
EM: Round [87] log likelihood: -1671.435067
EM: Round [88] log likelihood: -1671.429374
EM: Round [89] log likelihood: -1671.423726
EM: Round [90] log likelihood: -1671.418122
EM: Round [91] log likelihood: -1671.412561
EM: Round [92] log likelihood: -1671.407044
EM: Round [93] log likelihood: -1671.401569
EM: Round [94] log likelihood: -1671.396136
EM: Round [95] log likelihood: -1671.390745
EM: Round [96] log likelihood: -1671.385394
EM: Round [97] log likelihood: -1671.380084
EM: Round [98] log likelihood: -1671.374813
EM: Round [99] log likelihood: -1671.369582
EM: Round [100] log likelihood: -1671.364390
EM: Round [101] log likelihood: -1671.359236
EM: Round [102] log likelihood: -1671.354120
EM: Round [103] log likelihood: -1671.349042
EM: Round [104] log likelihood: -1671.344000
EM: Round [105] log likelihood: -1671.338995
EM: Round [106] log likelihood: -1671.334026
EM: Round [107] log likelihood: -1671.329092
EM: Round [108] log likelihood: -1671.324194
EM: Round [109] log likelihood: -1671.319330
EM: Round [110] log likelihood: -1671.314501
EM: Round [111] log likelihood: -1671.309705
EM: Round [112] log likelihood: -1671.304944
EM: Round [113] log likelihood: -1671.300215
EM: Round [114] log likelihood: -1671.295519
EM: Round [115] log likelihood: -1671.290856
EM: Round [116] log likelihood: -1671.286224
EM: Round [117] log likelihood: -1671.281624
EM: Round [118] log likelihood: -1671.277056
EM: Round [119] log likelihood: -1671.272518
EM: Round [120] log likelihood: -1671.268011
EM: Round [121] log likelihood: -1671.263534
EM: Round [122] log likelihood: -1671.259087
EM: Round [123] log likelihood: -1671.254670
EM: Round [124] log likelihood: -1671.250282
EM: Round [125] log likelihood: -1671.245922
EM: Round [126] log likelihood: -1671.241592
EM: Round [127] log likelihood: -1671.237289
EM: Round [128] log likelihood: -1671.233015
EM: Round [129] log likelihood: -1671.228769
EM: Round [130] log likelihood: -1671.224549
EM: Round [131] log likelihood: -1671.220357
EM: Round [132] log likelihood: -1671.216192
EM: Round [133] log likelihood: -1671.212053
EM: Round [134] log likelihood: -1671.207941
EM: Round [135] log likelihood: -1671.203854
EM: Round [136] log likelihood: -1671.199793
EM: Round [137] log likelihood: -1671.195758
EM: Round [138] log likelihood: -1671.191748
EM: Round [139] log likelihood: -1671.187763
EM: Round [140] log likelihood: -1671.183802
EM: Round [141] log likelihood: -1671.179866
EM: Round [142] log likelihood: -1671.175954
EM: Round [143] log likelihood: -1671.172066
EM: Round [144] log likelihood: -1671.168202
EM: Round [145] log likelihood: -1671.164361
EM: Round [146] log likelihood: -1671.160544
EM: Round [147] log likelihood: -1671.156749
EM: Round [148] log likelihood: -1671.152977
EM: Round [149] log likelihood: -1671.149228
EM: Round [150] log likelihood: -1671.145501
EM: Round [151] log likelihood: -1671.141797
EM: Round [152] log likelihood: -1671.138114
EM: Round [153] log likelihood: -1671.134453
EM: Round [154] log likelihood: -1671.130813
EM: Round [155] log likelihood: -1671.127195
EM: Round [156] log likelihood: -1671.123598
EM: Round [157] log likelihood: -1671.120021
EM: Round [158] log likelihood: -1671.116466
EM: Round [159] log likelihood: -1671.112931
EM: Round [160] log likelihood: -1671.109416
EM: Round [161] log likelihood: -1671.105921
EM: Round [162] log likelihood: -1671.102447
EM: Round [163] log likelihood: -1671.098992
EM: Round [164] log likelihood: -1671.095556
EM: Round [165] log likelihood: -1671.092140
EM: Round [166] log likelihood: -1671.088744
EM: Round [167] log likelihood: -1671.085366
EM: Round [168] log likelihood: -1671.082007
EM: Round [169] log likelihood: -1671.078667
EM: Round [170] log likelihood: -1671.075346
EM: Round [171] log likelihood: -1671.072043
EM: Round [172] log likelihood: -1671.068758
EM: Round [173] log likelihood: -1671.065491
EM: Round [174] log likelihood: -1671.062242
EM: Round [175] log likelihood: -1671.059011
EM: Round [176] log likelihood: -1671.055798
EM: Round [177] log likelihood: -1671.052601
EM: Round [178] log likelihood: -1671.049423
EM: Round [179] log likelihood: -1671.046261
EM: Round [180] log likelihood: -1671.043116
EM: Round [181] log likelihood: -1671.039989
EM: Round [182] log likelihood: -1671.036878
EM: Round [183] log likelihood: -1671.033783
EM: Round [184] log likelihood: -1671.030705
EM: Round [185] log likelihood: -1671.027643
EM: Round [186] log likelihood: -1671.024598
EM: Round [187] log likelihood: -1671.021568
EM: Round [188] log likelihood: -1671.018555
EM: Round [189] log likelihood: -1671.015557
EM: Round [190] log likelihood: -1671.012574
EM: Round [191] log likelihood: -1671.009608
EM: Round [192] log likelihood: -1671.006656
EM: Round [193] log likelihood: -1671.003720
EM: Round [194] log likelihood: -1671.000799
EM: Round [195] log likelihood: -1670.997893
EM: Round [196] log likelihood: -1670.995002
EM: Round [197] log likelihood: -1670.992126
EM: Round [198] log likelihood: -1670.989264
EM: Round [199] log likelihood: -1670.986417
EM: Round [200] log likelihood: -1670.983585
EM: Round [201] log likelihood: -1670.980766
EM: Round [202] log likelihood: -1670.977962
EM: Round [203] log likelihood: -1670.975172
EM: Round [204] log likelihood: -1670.972396
EM: Round [205] log likelihood: -1670.969634
EM: Round [206] log likelihood: -1670.966885
EM: Round [207] log likelihood: -1670.964151
EM: Round [208] log likelihood: -1670.961429
EM: Round [209] log likelihood: -1670.958722
EM: Round [210] log likelihood: -1670.956027
EM: Round [211] log likelihood: -1670.953346
EM: Round [212] log likelihood: -1670.950678
EM: Round [213] log likelihood: -1670.948023
EM: Round [214] log likelihood: -1670.945381
EM: Round [215] log likelihood: -1670.942752
EM: Round [216] log likelihood: -1670.940135
EM: Round [217] log likelihood: -1670.937531
EM: Round [218] log likelihood: -1670.934940
EM: Round [219] log likelihood: -1670.932361
EM: Round [220] log likelihood: -1670.929795
EM: Round [221] log likelihood: -1670.927241
EM: Round [222] log likelihood: -1670.924699
EM: Round [223] log likelihood: -1670.922169
EM: Round [224] log likelihood: -1670.919651
EM: Round [225] log likelihood: -1670.917146
EM: Round [226] log likelihood: -1670.914652
EM: Round [227] log likelihood: -1670.912169
EM: Round [228] log likelihood: -1670.909699
EM: Round [229] log likelihood: -1670.907240
EM: Round [230] log likelihood: -1670.904792
EM: Round [231] log likelihood: -1670.902356
EM: Round [232] log likelihood: -1670.899932
EM: Round [233] log likelihood: -1670.897518
EM: Round [234] log likelihood: -1670.895116
EM: Round [235] log likelihood: -1670.892725
EM: Round [236] log likelihood: -1670.890345
EM: Round [237] log likelihood: -1670.887976
EM: Round [238] log likelihood: -1670.885618
EM: Round [239] log likelihood: -1670.883270
EM: Round [240] log likelihood: -1670.880934
EM: Round [241] log likelihood: -1670.878608
EM: Round [242] log likelihood: -1670.876292
EM: Round [243] log likelihood: -1670.873987
EM: Round [244] log likelihood: -1670.871693
EM: Round [245] log likelihood: -1670.869409
EM: Round [246] log likelihood: -1670.867135
EM: Round [247] log likelihood: -1670.864871
EM: Round [248] log likelihood: -1670.862618
EM: Round [249] log likelihood: -1670.860374
EM: Round [250] log likelihood: -1670.858141
EM: Round [251] log likelihood: -1670.855918
EM: Round [252] log likelihood: -1670.853704
EM: Round [253] log likelihood: -1670.851501
EM: Round [254] log likelihood: -1670.849307
EM: Round [255] log likelihood: -1670.847122
EM: Round [256] log likelihood: -1670.844948
EM: Round [257] log likelihood: -1670.842783
EM: Round [258] log likelihood: -1670.840627
EM: Round [259] log likelihood: -1670.838481
EM: Round [260] log likelihood: -1670.836345
EM: Round [261] log likelihood: -1670.834217
EM: Round [262] log likelihood: -1670.832099
EM: Round [263] log likelihood: -1670.829990
EM: Round [264] log likelihood: -1670.827891
EM: Round [265] log likelihood: -1670.825800
EM: Round [266] log likelihood: -1670.823718
EM: Round [267] log likelihood: -1670.821646
EM: Round [268] log likelihood: -1670.819582
EM: Round [269] log likelihood: -1670.817527
EM: Round [270] log likelihood: -1670.815481
EM: Round [271] log likelihood: -1670.813443
EM: Round [272] log likelihood: -1670.811415
EM: Round [273] log likelihood: -1670.809395
EM: Round [274] log likelihood: -1670.807383
EM: Round [275] log likelihood: -1670.805380
EM: Round [276] log likelihood: -1670.803386
EM: Round [277] log likelihood: -1670.801400
EM: Round [278] log likelihood: -1670.799422
EM: Round [279] log likelihood: -1670.797453
EM: Round [280] log likelihood: -1670.795492
EM: Round [281] log likelihood: -1670.793539
EM: Round [282] log likelihood: -1670.791594
EM: Round [283] log likelihood: -1670.789657
EM: Round [284] log likelihood: -1670.787729
EM: Round [285] log likelihood: -1670.785808
EM: Round [286] log likelihood: -1670.783896
EM: Round [287] log likelihood: -1670.781991
EM: Round [288] log likelihood: -1670.780094
EM: Round [289] log likelihood: -1670.778205
EM: Round [290] log likelihood: -1670.776324
EM: Round [291] log likelihood: -1670.774450
EM: Round [292] log likelihood: -1670.772585
EM: Round [293] log likelihood: -1670.770726
EM: Round [294] log likelihood: -1670.768876
EM: Round [295] log likelihood: -1670.767033
EM: Round [296] log likelihood: -1670.765197
EM: Round [297] log likelihood: -1670.763369
EM: Round [298] log likelihood: -1670.761549
EM: Round [299] log likelihood: -1670.759735
EM: Round [300] log likelihood: -1670.757929
EM: Round [301] log likelihood: -1670.756131
EM: Round [302] log likelihood: -1670.754339
EM: Round [303] log likelihood: -1670.752555
EM: Round [304] log likelihood: -1670.750778
EM: Round [305] log likelihood: -1670.749008
EM: Round [306] log likelihood: -1670.747245
EM: Round [307] log likelihood: -1670.745489
EM: Round [308] log likelihood: -1670.743741
EM: Round [309] log likelihood: -1670.741999
EM: Round [310] log likelihood: -1670.740264
EM: Round [311] log likelihood: -1670.738536
EM: Round [312] log likelihood: -1670.736814
EM: Round [313] log likelihood: -1670.735100
EM: Round [314] log likelihood: -1670.733392
EM: Round [315] log likelihood: -1670.731691
EM: Round [316] log likelihood: -1670.729997
EM: Round [317] log likelihood: -1670.728309
EM: Round [318] log likelihood: -1670.726628
EM: Round [319] log likelihood: -1670.724954
EM: Round [320] log likelihood: -1670.723286
EM: Round [321] log likelihood: -1670.721625
EM: Round [322] log likelihood: -1670.719970
EM: Round [323] log likelihood: -1670.718321
EM: Round [324] log likelihood: -1670.716679
EM: Round [325] log likelihood: -1670.715043
EM: Round [326] log likelihood: -1670.713414
EM: Round [327] log likelihood: -1670.711791
EM: Round [328] log likelihood: -1670.710174
EM: Round [329] log likelihood: -1670.708563
EM: Round [330] log likelihood: -1670.706958
EM: Round [331] log likelihood: -1670.705360
EM: Round [332] log likelihood: -1670.703768
EM: Round [333] log likelihood: -1670.702182
EM: Round [334] log likelihood: -1670.700602
EM: Round [335] log likelihood: -1670.699027
EM: Round [336] log likelihood: -1670.697459
EM: Round [337] log likelihood: -1670.695897
EM: Round [338] log likelihood: -1670.694341
EM: Round [339] log likelihood: -1670.692791
EM: Round [340] log likelihood: -1670.691246
EM: Round [341] log likelihood: -1670.689708
EM: Round [342] log likelihood: -1670.688175
EM: Round [343] log likelihood: -1670.686648
EM: Round [344] log likelihood: -1670.685126
EM: Round [345] log likelihood: -1670.683611
EM: Round [346] log likelihood: -1670.682101
EM: Round [347] log likelihood: -1670.680596
EM: Round [348] log likelihood: -1670.679098
EM: Round [349] log likelihood: -1670.677605
EM: Round [350] log likelihood: -1670.676117
EM: Round [351] log likelihood: -1670.674635
EM: Round [352] log likelihood: -1670.673158
EM: Round [353] log likelihood: -1670.671687
EM: Round [354] log likelihood: -1670.670222
EM: Round [355] log likelihood: -1670.668762
EM: Round [356] log likelihood: -1670.667307
EM: Round [357] log likelihood: -1670.665857
EM: Round [358] log likelihood: -1670.664413
EM: Round [359] log likelihood: -1670.662975
EM: Round [360] log likelihood: -1670.661541
EM: Round [361] log likelihood: -1670.660113
EM: Round [362] log likelihood: -1670.658690
EM: Round [363] log likelihood: -1670.657272
EM: Round [364] log likelihood: -1670.655859
EM: Round [365] log likelihood: -1670.654452
EM: Round [366] log likelihood: -1670.653049
EM: Round [367] log likelihood: -1670.651652
EM: Round [368] log likelihood: -1670.650260
EM: Round [369] log likelihood: -1670.648873
EM: Round [370] log likelihood: -1670.647490
EM: Round [371] log likelihood: -1670.646113
EM: Round [372] log likelihood: -1670.644741
EM: Round [373] log likelihood: -1670.643374
EM: Round [374] log likelihood: -1670.642011
EM: Round [375] log likelihood: -1670.640654
EM: Round [376] log likelihood: -1670.639301
EM: Round [377] log likelihood: -1670.637954
EM: Round [378] log likelihood: -1670.636611
EM: Round [379] log likelihood: -1670.635273
EM: Round [380] log likelihood: -1670.633939
EM: Round [381] log likelihood: -1670.632611
EM: Round [382] log likelihood: -1670.631287
EM: Round [383] log likelihood: -1670.629968
EM: Round [384] log likelihood: -1670.628653
EM: Round [385] log likelihood: -1670.627343
EM: Round [386] log likelihood: -1670.626038
EM: Round [387] log likelihood: -1670.624738
EM: Round [388] log likelihood: -1670.623442
EM: Round [389] log likelihood: -1670.622150
EM: Round [390] log likelihood: -1670.620863
EM: Round [391] log likelihood: -1670.619581
EM: Round [392] log likelihood: -1670.618303
EM: Round [393] log likelihood: -1670.617030
EM: Round [394] log likelihood: -1670.615761
EM: Round [395] log likelihood: -1670.614497
EM: Round [396] log likelihood: -1670.613237
EM: Round [397] log likelihood: -1670.611981
EM: Round [398] log likelihood: -1670.610730
EM: Round [399] log likelihood: -1670.609483
EM: Round [400] log likelihood: -1670.608241
EM: Round [401] log likelihood: -1670.607002
EM: Round [402] log likelihood: -1670.605768
EM: Round [403] log likelihood: -1670.604539
EM: Round [404] log likelihood: -1670.603313
EM: Round [405] log likelihood: -1670.602092
EM: Round [406] log likelihood: -1670.600875
EM: Round [407] log likelihood: -1670.599663
EM: Round [408] log likelihood: -1670.598454
EM: Round [409] log likelihood: -1670.597250
EM: Round [410] log likelihood: -1670.596049
EM: Round [411] log likelihood: -1670.594853
EM: Round [412] log likelihood: -1670.593661
EM: Round [413] log likelihood: -1670.592473
EM: Round [414] log likelihood: -1670.591289
EM: Round [415] log likelihood: -1670.590109
EM: Round [416] log likelihood: -1670.588934
EM: Round [417] log likelihood: -1670.587762
EM: Round [418] log likelihood: -1670.586594
EM: Round [419] log likelihood: -1670.585430
EM: Round [420] log likelihood: -1670.584270
EM: Round [421] log likelihood: -1670.583114
EM: Round [422] log likelihood: -1670.581962
EM: Round [423] log likelihood: -1670.580814
EM: Round [424] log likelihood: -1670.579670
EM: Round [425] log likelihood: -1670.578529
EM: Round [426] log likelihood: -1670.577393
EM: Round [427] log likelihood: -1670.576260
EM: Round [428] log likelihood: -1670.575131
EM: Round [429] log likelihood: -1670.574006
EM: Round [430] log likelihood: -1670.572885
EM: Round [431] log likelihood: -1670.571767
EM: Round [432] log likelihood: -1670.570653
EM: Round [433] log likelihood: -1670.569543
EM: Round [434] log likelihood: -1670.568437
EM: Round [435] log likelihood: -1670.567334
EM: Round [436] log likelihood: -1670.566235
EM: Round [437] log likelihood: -1670.565139
EM: Round [438] log likelihood: -1670.564048
EM: Round [439] log likelihood: -1670.562960
EM: Round [440] log likelihood: -1670.561875
EM: Round [441] log likelihood: -1670.560794
EM: Round [442] log likelihood: -1670.559717
EM: Round [443] log likelihood: -1670.558643
EM: Round [444] log likelihood: -1670.557573
EM: Round [445] log likelihood: -1670.556506
EM: Round [446] log likelihood: -1670.555443
EM: Round [447] log likelihood: -1670.554383
EM: Round [448] log likelihood: -1670.553327
EM: Round [449] log likelihood: -1670.552275
EM: Round [450] log likelihood: -1670.551225
EM: Round [451] log likelihood: -1670.550180
EM: Round [452] log likelihood: -1670.549137
EM: Round [453] log likelihood: -1670.548098
EM: Round [454] log likelihood: -1670.547063
EM: Round [455] log likelihood: -1670.546031
EM: Round [456] log likelihood: -1670.545002
EM: Round [457] log likelihood: -1670.543976
EM: Round [458] log likelihood: -1670.542954
EM: Round [459] log likelihood: -1670.541935
EM: Round [460] log likelihood: -1670.540920
EM: Round [461] log likelihood: -1670.539908
EM: Round [462] log likelihood: -1670.538899
EM: Round [463] log likelihood: -1670.537893
EM: Round [464] log likelihood: -1670.536891
EM: Round [465] log likelihood: -1670.535892
EM: Round [466] log likelihood: -1670.534896
EM: Round [467] log likelihood: -1670.533903
EM: Round [468] log likelihood: -1670.532914
EM: Round [469] log likelihood: -1670.531928
EM: Round [470] log likelihood: -1670.530945
EM: Round [471] log likelihood: -1670.529965
EM: Round [472] log likelihood: -1670.528988
EM: Round [473] log likelihood: -1670.528014
EM: Round [474] log likelihood: -1670.527044
EM: Round [475] log likelihood: -1670.526076
EM: Round [476] log likelihood: -1670.525112
EM: Round [477] log likelihood: -1670.524151
EM: Round [478] log likelihood: -1670.523193
EM: Round [479] log likelihood: -1670.522237
EM: Round [480] log likelihood: -1670.521285
EM: Round [481] log likelihood: -1670.520336
EM: Round [482] log likelihood: -1670.519390
EM: Round [483] log likelihood: -1670.518447
EM: Round [484] log likelihood: -1670.517507
EM: Round [485] log likelihood: -1670.516570
EM: Round [486] log likelihood: -1670.515636
EM: Round [487] log likelihood: -1670.514705
EM: Round [488] log likelihood: -1670.513777
EM: Round [489] log likelihood: -1670.512852
EM: Round [490] log likelihood: -1670.511930
EM: Round [491] log likelihood: -1670.511010
EM: Round [492] log likelihood: -1670.510094
EM: Round [493] log likelihood: -1670.509180
EM: Round [494] log likelihood: -1670.508269
EM: Round [495] log likelihood: -1670.507361
EM: Round [496] log likelihood: -1670.506456
EM: Round [497] log likelihood: -1670.505554
EM: Round [498] log likelihood: -1670.504655
EM: Round [499] log likelihood: -1670.503758
EM: Round [500] log likelihood: -1670.502865
EM: Round [501] log likelihood: -1670.501974
EM: Round [502] log likelihood: -1670.501086
EM: Round [503] log likelihood: -1670.500200
EM: Round [504] log likelihood: -1670.499318
EM: Round [505] log likelihood: -1670.498438
EM: Round [506] log likelihood: -1670.497561
EM: Round [507] log likelihood: -1670.496686
EM: Round [508] log likelihood: -1670.495815
EM: Round [509] log likelihood: -1670.494946
EM: Round [510] log likelihood: -1670.494079
EM: Round [511] log likelihood: -1670.493216
EM: Round [512] log likelihood: -1670.492355
EM: Round [513] log likelihood: -1670.491497
EM: Round [514] log likelihood: -1670.490641
EM: Round [515] log likelihood: -1670.489788
EM: Round [516] log likelihood: -1670.488938
EM: Round [517] log likelihood: -1670.488090
EM: Round [518] log likelihood: -1670.487245
EM: Round [519] log likelihood: -1670.486403
EM: Round [520] log likelihood: -1670.485563
EM: Round [521] log likelihood: -1670.484725
EM: Round [522] log likelihood: -1670.483891
EM: Round [523] log likelihood: -1670.483058
EM: Round [524] log likelihood: -1670.482229
EM: Round [525] log likelihood: -1670.481402
EM: Round [526] log likelihood: -1670.480577
EM: Round [527] log likelihood: -1670.479755
EM: Round [528] log likelihood: -1670.478936
EM: Round [529] log likelihood: -1670.478119
EM: Round [530] log likelihood: -1670.477304
EM: Round [531] log likelihood: -1670.476492
EM: Round [532] log likelihood: -1670.475683
EM: Round [533] log likelihood: -1670.474875
EM: Round [534] log likelihood: -1670.474071
EM: Round [535] log likelihood: -1670.473269
EM: Round [536] log likelihood: -1670.472469
EM: Round [537] log likelihood: -1670.471672
EM: Round [538] log likelihood: -1670.470877
EM: Round [539] log likelihood: -1670.470084
EM: Round [540] log likelihood: -1670.469294
EM: Round [541] log likelihood: -1670.468506
EM: Round [542] log likelihood: -1670.467721
EM: Round [543] log likelihood: -1670.466938
EM: Round [544] log likelihood: -1670.466157
EM: Round [545] log likelihood: -1670.465379
EM: Round [546] log likelihood: -1670.464603
EM: Round [547] log likelihood: -1670.463830
EM: Round [548] log likelihood: -1670.463058
EM: Round [549] log likelihood: -1670.462289
EM: Round [550] log likelihood: -1670.461523
EM: Round [551] log likelihood: -1670.460758
EM: Round [552] log likelihood: -1670.459996
EM: Round [553] log likelihood: -1670.459237
EM: Round [554] log likelihood: -1670.458479
EM: Round [555] log likelihood: -1670.457724
EM: Round [556] log likelihood: -1670.456971
EM: Round [557] log likelihood: -1670.456220
EM: Round [558] log likelihood: -1670.455472
EM: Round [559] log likelihood: -1670.454726
EM: Round [560] log likelihood: -1670.453982
EM: Round [561] log likelihood: -1670.453240
EM: Round [562] log likelihood: -1670.452500
EM: Round [563] log likelihood: -1670.451763
EM: Round [564] log likelihood: -1670.451028
EM: Round [565] log likelihood: -1670.450295
EM: Round [566] log likelihood: -1670.449564
EM: Round [567] log likelihood: -1670.448835
EM: Round [568] log likelihood: -1670.448109
EM: Round [569] log likelihood: -1670.447384
EM: Round [570] log likelihood: -1670.446662
EM: Round [571] log likelihood: -1670.445942
EM: Round [572] log likelihood: -1670.445224
EM: Round [573] log likelihood: -1670.444508
EM: Round [574] log likelihood: -1670.443794
EM: Round [575] log likelihood: -1670.443083
EM: Round [576] log likelihood: -1670.442373
EM: Round [577] log likelihood: -1670.441666
EM: Round [578] log likelihood: -1670.440960
EM: Round [579] log likelihood: -1670.440257
EM: Round [580] log likelihood: -1670.439556
EM: Round [581] log likelihood: -1670.438857
EM: Round [582] log likelihood: -1670.438160
EM: Round [583] log likelihood: -1670.437465
EM: Round [584] log likelihood: -1670.436772
EM: Round [585] log likelihood: -1670.436081
EM: Round [586] log likelihood: -1670.435392
EM: Round [587] log likelihood: -1670.434705
EM: Round [588] log likelihood: -1670.434020
EM: Round [589] log likelihood: -1670.433337
EM: Round [590] log likelihood: -1670.432656
EM: Round [591] log likelihood: -1670.431977
EM: Round [592] log likelihood: -1670.431300
EM: Round [593] log likelihood: -1670.430625
EM: Round [594] log likelihood: -1670.429952
EM: Round [595] log likelihood: -1670.429281
EM: Round [596] log likelihood: -1670.428611
EM: Round [597] log likelihood: -1670.427944
EM: Round [598] log likelihood: -1670.427279
EM: Round [599] log likelihood: -1670.426616
EM: Round [600] log likelihood: -1670.425954
EM: Round [601] log likelihood: -1670.425295
EM: Round [602] log likelihood: -1670.424637
EM: Round [603] log likelihood: -1670.423981
EM: Round [604] log likelihood: -1670.423328
EM: Round [605] log likelihood: -1670.422676
EM: Round [606] log likelihood: -1670.422026
EM: Round [607] log likelihood: -1670.421377
EM: Round [608] log likelihood: -1670.420731
EM: Round [609] log likelihood: -1670.420087
EM: Round [610] log likelihood: -1670.419444
EM: Round [611] log likelihood: -1670.418803
EM: Round [612] log likelihood: -1670.418165
EM: Round [613] log likelihood: -1670.417528
EM: Round [614] log likelihood: -1670.416892
EM: Round [615] log likelihood: -1670.416259
EM: Round [616] log likelihood: -1670.415627
EM: Round [617] log likelihood: -1670.414998
EM: Round [618] log likelihood: -1670.414370
EM: Round [619] log likelihood: -1670.413743
EM: Round [620] log likelihood: -1670.413119
EM: Round [621] log likelihood: -1670.412496
EM: Round [622] log likelihood: -1670.411876
EM: Round [623] log likelihood: -1670.411257
EM: Round [624] log likelihood: -1670.410639
EM: Round [625] log likelihood: -1670.410024
EM: Round [626] log likelihood: -1670.409410
EM: Round [627] log likelihood: -1670.408798
EM: Round [628] log likelihood: -1670.408188
EM: Round [629] log likelihood: -1670.407579
EM: Round [630] log likelihood: -1670.406972
EM: Round [631] log likelihood: -1670.406367
EM: Round [632] log likelihood: -1670.405764
EM: Round [633] log likelihood: -1670.405162
EM: Round [634] log likelihood: -1670.404562
EM: Round [635] log likelihood: -1670.403964
EM: Round [636] log likelihood: -1670.403368
EM: Round [637] log likelihood: -1670.402773
EM: Round [638] log likelihood: -1670.402180
EM: Round [639] log likelihood: -1670.401588
EM: Round [640] log likelihood: -1670.400998
EM: Round [641] log likelihood: -1670.400410
EM: Round [642] log likelihood: -1670.399824
EM: Round [643] log likelihood: -1670.399239
EM: Round [644] log likelihood: -1670.398656
EM: Round [645] log likelihood: -1670.398074
EM: Round [646] log likelihood: -1670.397494
EM: Round [647] log likelihood: -1670.396916
EM: Round [648] log likelihood: -1670.396339
EM: Round [649] log likelihood: -1670.395764
EM: Round [650] log likelihood: -1670.395191
EM: Round [651] log likelihood: -1670.394619
EM: Round [652] log likelihood: -1670.394049
EM: Round [653] log likelihood: -1670.393480
EM: Round [654] log likelihood: -1670.392913
EM: Round [655] log likelihood: -1670.392348
EM: Round [656] log likelihood: -1670.391784
EM: Round [657] log likelihood: -1670.391222
EM: Round [658] log likelihood: -1670.390661
EM: Round [659] log likelihood: -1670.390102
EM: Round [660] log likelihood: -1670.389544
EM: Round [661] log likelihood: -1670.388988
EM: Round [662] log likelihood: -1670.388434
EM: Round [663] log likelihood: -1670.387881
EM: Round [664] log likelihood: -1670.387330
EM: Round [665] log likelihood: -1670.386780
EM: Round [666] log likelihood: -1670.386232
EM: Round [667] log likelihood: -1670.385685
EM: Round [668] log likelihood: -1670.385140
EM: Round [669] log likelihood: -1670.384596
EM: Round [670] log likelihood: -1670.384054
EM: Round [671] log likelihood: -1670.383513
EM: Round [672] log likelihood: -1670.382974
EM: Round [673] log likelihood: -1670.382436
EM: Round [674] log likelihood: -1670.381900
EM: Round [675] log likelihood: -1670.381365
EM: Round [676] log likelihood: -1670.380832
EM: Round [677] log likelihood: -1670.380300
EM: Round [678] log likelihood: -1670.379770
EM: Round [679] log likelihood: -1670.379241
EM: Round [680] log likelihood: -1670.378713
EM: Round [681] log likelihood: -1670.378188
EM: Round [682] log likelihood: -1670.377663
EM: Round [683] log likelihood: -1670.377140
EM: Round [684] log likelihood: -1670.376618
EM: Round [685] log likelihood: -1670.376098
EM: Round [686] log likelihood: -1670.375580
EM: Round [687] log likelihood: -1670.375062
EM: Round [688] log likelihood: -1670.374546
EM: Round [689] log likelihood: -1670.374032
EM: Round [690] log likelihood: -1670.373519
EM: Round [691] log likelihood: -1670.373007
EM: Round [692] log likelihood: -1670.372497
EM: Round [693] log likelihood: -1670.371988
EM: Round [694] log likelihood: -1670.371481
EM: Round [695] log likelihood: -1670.370975
EM: Round [696] log likelihood: -1670.370470
EM: Round [697] log likelihood: -1670.369967
EM: Round [698] log likelihood: -1670.369465
EM: Round [699] log likelihood: -1670.368965
EM: Round [700] log likelihood: -1670.368466
EM: Round [701] log likelihood: -1670.367968
EM: Round [702] log likelihood: -1670.367471
EM: Round [703] log likelihood: -1670.366976
EM: Round [704] log likelihood: -1670.366483
EM: Round [705] log likelihood: -1670.365990
EM: Round [706] log likelihood: -1670.365499
EM: Round [707] log likelihood: -1670.365010
EM: Round [708] log likelihood: -1670.364521
EM: Round [709] log likelihood: -1670.364034
EM: Round [710] log likelihood: -1670.363549
EM: Round [711] log likelihood: -1670.363064
EM: Round [712] log likelihood: -1670.362581
EM: Round [713] log likelihood: -1670.362100
EM: Round [714] log likelihood: -1670.361619
EM: Round [715] log likelihood: -1670.361140
EM: Round [716] log likelihood: -1670.360662
EM: Round [717] log likelihood: -1670.360186
EM: Round [718] log likelihood: -1670.359710
EM: Round [719] log likelihood: -1670.359237
EM: Round [720] log likelihood: -1670.358764
EM: Round [721] log likelihood: -1670.358293
EM: Round [722] log likelihood: -1670.357822
EM: Round [723] log likelihood: -1670.357354
EM: Round [724] log likelihood: -1670.356886
EM: Round [725] log likelihood: -1670.356420
EM: Round [726] log likelihood: -1670.355955
EM: Round [727] log likelihood: -1670.355491
EM: Round [728] log likelihood: -1670.355028
EM: Round [729] log likelihood: -1670.354567
EM: Round [730] log likelihood: -1670.354107
EM: Round [731] log likelihood: -1670.353648
EM: Round [732] log likelihood: -1670.353191
EM: Round [733] log likelihood: -1670.352734
EM: Round [734] log likelihood: -1670.352279
EM: Round [735] log likelihood: -1670.351825
EM: Round [736] log likelihood: -1670.351373
EM: Round [737] log likelihood: -1670.350921
EM: Round [738] log likelihood: -1670.350471
EM: Round [739] log likelihood: -1670.350022
EM: Round [740] log likelihood: -1670.349574
EM: Round [741] log likelihood: -1670.349128
EM: Round [742] log likelihood: -1670.348682
EM: Round [743] log likelihood: -1670.348238
EM: Round [744] log likelihood: -1670.347795
EM: Round [745] log likelihood: -1670.347353
EM: Round [746] log likelihood: -1670.346913
EM: Round [747] log likelihood: -1670.346473
EM: Round [748] log likelihood: -1670.346035
EM: Round [749] log likelihood: -1670.345598
EM: Round [750] log likelihood: -1670.345162
EM: Round [751] log likelihood: -1670.344727
EM: Round [752] log likelihood: -1670.344293
EM: Round [753] log likelihood: -1670.343861
EM: Round [754] log likelihood: -1670.343430
EM: Round [755] log likelihood: -1670.342999
EM: Round [756] log likelihood: -1670.342570
EM: Round [757] log likelihood: -1670.342142
EM: Round [758] log likelihood: -1670.341716
EM: Round [759] log likelihood: -1670.341290
EM: Round [760] log likelihood: -1670.340866
EM: Round [761] log likelihood: -1670.340442
EM: Round [762] log likelihood: -1670.340020
EM: Round [763] log likelihood: -1670.339599
EM: Round [764] log likelihood: -1670.339179
EM: Round [765] log likelihood: -1670.338760
EM: Round [766] log likelihood: -1670.338342
EM: Round [767] log likelihood: -1670.337926
EM: Round [768] log likelihood: -1670.337510
EM: Round [769] log likelihood: -1670.337096
EM: Round [770] log likelihood: -1670.336682
EM: Round [771] log likelihood: -1670.336270
EM: Round [772] log likelihood: -1670.335859
EM: Round [773] log likelihood: -1670.335449
EM: Round [774] log likelihood: -1670.335040
EM: Round [775] log likelihood: -1670.334632
EM: Round [776] log likelihood: -1670.334225
EM: Round [777] log likelihood: -1670.333820
EM: Round [778] log likelihood: -1670.333415
EM: Round [779] log likelihood: -1670.333011
EM: Round [780] log likelihood: -1670.332609
EM: Round [781] log likelihood: -1670.332207
EM: Round [782] log likelihood: -1670.331807
EM: Round [783] log likelihood: -1670.331407
EM: Round [784] log likelihood: -1670.331009
EM: Round [785] log likelihood: -1670.330612
EM: Round [786] log likelihood: -1670.330216
EM: Round [787] log likelihood: -1670.329821
EM: Round [788] log likelihood: -1670.329426
EM: Round [789] log likelihood: -1670.329033
EM: Round [790] log likelihood: -1670.328641
EM: Round [791] log likelihood: -1670.328250
EM: Round [792] log likelihood: -1670.327860
EM: Round [793] log likelihood: -1670.327471
EM: Round [794] log likelihood: -1670.327083
EM: Round [795] log likelihood: -1670.326696
EM: Round [796] log likelihood: -1670.326310
EM: Round [797] log likelihood: -1670.325925
EM: Round [798] log likelihood: -1670.325542
EM: Round [799] log likelihood: -1670.325159
EM: Round [800] log likelihood: -1670.324777
EM: Round [801] log likelihood: -1670.324396
EM: Round [802] log likelihood: -1670.324016
EM: Round [803] log likelihood: -1670.323637
EM: Round [804] log likelihood: -1670.323259
EM: Round [805] log likelihood: -1670.322882
EM: Round [806] log likelihood: -1670.322506
EM: Round [807] log likelihood: -1670.322131
EM: Round [808] log likelihood: -1670.321757
EM: Round [809] log likelihood: -1670.321384
EM: Round [810] log likelihood: -1670.321012
EM: Round [811] log likelihood: -1670.320641
EM: Round [812] log likelihood: -1670.320271
EM: Round [813] log likelihood: -1670.319902
EM: Round [814] log likelihood: -1670.319534
EM: Round [815] log likelihood: -1670.319167
EM: Round [816] log likelihood: -1670.318800
EM: Round [817] log likelihood: -1670.318435
EM: Round [818] log likelihood: -1670.318071
EM: Round [819] log likelihood: -1670.317707
EM: Round [820] log likelihood: -1670.317345
EM: Round [821] log likelihood: -1670.316983
EM: Round [822] log likelihood: -1670.316623
EM: Round [823] log likelihood: -1670.316263
EM: Round [824] log likelihood: -1670.315904
EM: Round [825] log likelihood: -1670.315547
EM: Round [826] log likelihood: -1670.315190
EM: Round [827] log likelihood: -1670.314834
EM: Round [828] log likelihood: -1670.314479
EM: Round [829] log likelihood: -1670.314125
EM: Round [830] log likelihood: -1670.313772
EM: Round [831] log likelihood: -1670.313419
EM: Round [832] log likelihood: -1670.313068
EM: Round [833] log likelihood: -1670.312718
EM: Round [834] log likelihood: -1670.312368
EM: Round [835] log likelihood: -1670.312019
EM: Round [836] log likelihood: -1670.311672
EM: Round [837] log likelihood: -1670.311325
EM: Round [838] log likelihood: -1670.310979
EM: Round [839] log likelihood: -1670.310634
EM: Round [840] log likelihood: -1670.310290
EM: Round [841] log likelihood: -1670.309946
EM: Round [842] log likelihood: -1670.309604
EM: Round [843] log likelihood: -1670.309263
EM: Round [844] log likelihood: -1670.308922
EM: Round [845] log likelihood: -1670.308582
EM: Round [846] log likelihood: -1670.308243
EM: Round [847] log likelihood: -1670.307905
EM: Round [848] log likelihood: -1670.307568
EM: Round [849] log likelihood: -1670.307232
EM: Round [850] log likelihood: -1670.306897
EM: Round [851] log likelihood: -1670.306562
EM: Round [852] log likelihood: -1670.306229
EM: Round [853] log likelihood: -1670.305896
EM: Round [854] log likelihood: -1670.305564
EM: Round [855] log likelihood: -1670.305233
EM: Round [856] log likelihood: -1670.304902
EM: Round [857] log likelihood: -1670.304573
EM: Round [858] log likelihood: -1670.304244
EM: Round [859] log likelihood: -1670.303917
EM: Round [860] log likelihood: -1670.303590
EM: Round [861] log likelihood: -1670.303264
EM: Round [862] log likelihood: -1670.302939
EM: Round [863] log likelihood: -1670.302614
EM: Round [864] log likelihood: -1670.302291
EM: Round [865] log likelihood: -1670.301968
EM: Round [866] log likelihood: -1670.301646
EM: Round [867] log likelihood: -1670.301325
EM: Round [868] log likelihood: -1670.301005
EM: Round [869] log likelihood: -1670.300685
EM: Round [870] log likelihood: -1670.300367
EM: Round [871] log likelihood: -1670.300049
EM: Round [872] log likelihood: -1670.299732
EM: Round [873] log likelihood: -1670.299416
EM: Round [874] log likelihood: -1670.299101
EM: Round [875] log likelihood: -1670.298786
EM: Round [876] log likelihood: -1670.298472
EM: Round [877] log likelihood: -1670.298159
EM: Round [878] log likelihood: -1670.297847
EM: Round [879] log likelihood: -1670.297536
EM: Round [880] log likelihood: -1670.297225
EM: Round [881] log likelihood: -1670.296916
EM: Round [882] log likelihood: -1670.296607
EM: Round [883] log likelihood: -1670.296298
EM: Round [884] log likelihood: -1670.295991
EM: Round [885] log likelihood: -1670.295684
EM: Round [886] log likelihood: -1670.295378
EM: Round [887] log likelihood: -1670.295073
EM: Round [888] log likelihood: -1670.294769
EM: Round [889] log likelihood: -1670.294466
EM: Round [890] log likelihood: -1670.294163
EM: Round [891] log likelihood: -1670.293861
EM: Round [892] log likelihood: -1670.293560
EM: Round [893] log likelihood: -1670.293259
EM: Round [894] log likelihood: -1670.292959
EM: Round [895] log likelihood: -1670.292660
EM: Round [896] log likelihood: -1670.292362
EM: Round [897] log likelihood: -1670.292065
EM: Round [898] log likelihood: -1670.291768
EM: Round [899] log likelihood: -1670.291472
EM: Round [900] log likelihood: -1670.291177
EM: Round [901] log likelihood: -1670.290883
EM: Round [902] log likelihood: -1670.290589
EM: Round [903] log likelihood: -1670.290296
EM: Round [904] log likelihood: -1670.290004
EM: Round [905] log likelihood: -1670.289712
EM: Round [906] log likelihood: -1670.289422
EM: Round [907] log likelihood: -1670.289132
EM: Round [908] log likelihood: -1670.288842
EM: Round [909] log likelihood: -1670.288554
EM: Round [910] log likelihood: -1670.288266
EM: Round [911] log likelihood: -1670.287979
EM: Round [912] log likelihood: -1670.287693
EM: Round [913] log likelihood: -1670.287407
EM: Round [914] log likelihood: -1670.287122
EM: Round [915] log likelihood: -1670.286838
EM: Round [916] log likelihood: -1670.286555
EM: Round [917] log likelihood: -1670.286272
EM: Round [918] log likelihood: -1670.285990
EM: Round [919] log likelihood: -1670.285708
EM: Round [920] log likelihood: -1670.285428
EM: Round [921] log likelihood: -1670.285148
EM: Round [922] log likelihood: -1670.284869
EM: Round [923] log likelihood: -1670.284590
EM: Round [924] log likelihood: -1670.284312
EM: Round [925] log likelihood: -1670.284035
EM: Round [926] log likelihood: -1670.283759
EM: Round [927] log likelihood: -1670.283483
EM: Round [928] log likelihood: -1670.283208
EM: Round [929] log likelihood: -1670.282934
EM: Round [930] log likelihood: -1670.282660
EM: Round [931] log likelihood: -1670.282387
EM: Round [932] log likelihood: -1670.282115
EM: Round [933] log likelihood: -1670.281843
EM: Round [934] log likelihood: -1670.281572
EM: Round [935] log likelihood: -1670.281302
EM: Round [936] log likelihood: -1670.281033
EM: Round [937] log likelihood: -1670.280764
EM: Round [938] log likelihood: -1670.280496
EM: Round [939] log likelihood: -1670.280228
EM: Round [940] log likelihood: -1670.279961
EM: Round [941] log likelihood: -1670.279695
EM: Round [942] log likelihood: -1670.279430
EM: Round [943] log likelihood: -1670.279165
EM: Round [944] log likelihood: -1670.278900
EM: Round [945] log likelihood: -1670.278637
EM: Round [946] log likelihood: -1670.278374
EM: Round [947] log likelihood: -1670.278112
EM: Round [948] log likelihood: -1670.277850
EM: Round [949] log likelihood: -1670.277589
EM: Round [950] log likelihood: -1670.277329
EM: Round [951] log likelihood: -1670.277069
EM: Round [952] log likelihood: -1670.276810
EM: Round [953] log likelihood: -1670.276552
EM: Round [954] log likelihood: -1670.276294
EM: Round [955] log likelihood: -1670.276037
EM: Round [956] log likelihood: -1670.275781
EM: Round [957] log likelihood: -1670.275525
EM: Round [958] log likelihood: -1670.275270
EM: Round [959] log likelihood: -1670.275016
EM: Round [960] log likelihood: -1670.274762
EM: Round [961] log likelihood: -1670.274509
EM: Round [962] log likelihood: -1670.274256
EM: Round [963] log likelihood: -1670.274004
EM: Round [964] log likelihood: -1670.273753
EM: Round [965] log likelihood: -1670.273502
EM: Round [966] log likelihood: -1670.273252
EM: Round [967] log likelihood: -1670.273003
EM: Round [968] log likelihood: -1670.272754
EM: Round [969] log likelihood: -1670.272505
EM: Round [970] log likelihood: -1670.272258
EM: Round [971] log likelihood: -1670.272011
EM: Round [972] log likelihood: -1670.271765
EM: Round [973] log likelihood: -1670.271519
EM: Round [974] log likelihood: -1670.271274
EM: Round [975] log likelihood: -1670.271029
EM: Round [976] log likelihood: -1670.270785
EM: Round [977] log likelihood: -1670.270542
EM: Round [978] log likelihood: -1670.270299
EM: Round [979] log likelihood: -1670.270057
EM: Round [980] log likelihood: -1670.269815
EM: Round [981] log likelihood: -1670.269574
EM: Round [982] log likelihood: -1670.269334
EM: Round [983] log likelihood: -1670.269094
EM: Round [984] log likelihood: -1670.268855
EM: Round [985] log likelihood: -1670.268617
EM: Round [986] log likelihood: -1670.268379
EM: Round [987] log likelihood: -1670.268141
EM: Round [988] log likelihood: -1670.267905
EM: Round [989] log likelihood: -1670.267668
EM: Round [990] log likelihood: -1670.267433
EM: Round [991] log likelihood: -1670.267198
EM: Round [992] log likelihood: -1670.266963
EM: Round [993] log likelihood: -1670.266729
EM: Round [994] log likelihood: -1670.266496
EM: Round [995] log likelihood: -1670.266263
EM: Round [996] log likelihood: -1670.266031
EM: Round [997] log likelihood: -1670.265800
EM: Round [998] log likelihood: -1670.265569
EM: Round [999] log likelihood: -1670.265338
EM: Round [1000] log likelihood: -1670.265108
EM: Round [1001] log likelihood: -1670.264879
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_EM_runner.pl /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass > /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/EM_adj_counts.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1_1.fastp.fastq.gz /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj > /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM
-total frags in /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1_1.fastp.fastq.gz: 296563078
Execution Time = 5.67 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1_1.fastp.fastq.gz /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj > /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/add_FFPM.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/misc/find_microhomologies_by_kmer_matches.pl --fasta /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.fa --gtf /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.gtf > /tmp/nxf.2slL2KydIu/fi_workdir/microH.dat
Execution Time = 0.01 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/misc/find_microhomologies_by_kmer_matches.pl --fasta /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.fa --gtf /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.gtf > /tmp/nxf.2slL2KydIu/fi_workdir/microH.dat
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/microH.dat.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/misc/append_microH_distance.py /tmp/nxf.2slL2KydIu/fi_workdir/microH.dat /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM > /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM.wMicroH
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/misc/append_microH_distance.py /tmp/nxf.2slL2KydIu/fi_workdir/microH.dat /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM > /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM.wMicroH
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/append_microH_info.ok
Running: cp /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM.wMicroH /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.FusionInspector.fusions.tsv
Execution Time = 0.00 minutes. CMD: cp /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM.wMicroH /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.FusionInspector.fusions.tsv
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/cp_final.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/column_exclusions.pl /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.FusionInspector.fusions.tsv JunctionReads,SpanningFrags,CounterFusionLeftReads,CounterFusionRightReads > /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.FusionInspector.fusions.abridged.tsv
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/column_exclusions.pl /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.FusionInspector.fusions.tsv JunctionReads,SpanningFrags,CounterFusionLeftReads,CounterFusionRightReads > /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.FusionInspector.fusions.abridged.tsv
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/final.abridged.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/create_fusion_inspector_igvjs.py --fusion_inspector_directory /tmp/nxf.2slL2KydIu --json_outfile /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.fusion_inspector_web.json --file_prefix tih_rna_sample_00729_B23MVV7LT4_1
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/create_fusion_inspector_igvjs.py --fusion_inspector_directory /tmp/nxf.2slL2KydIu --json_outfile /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.fusion_inspector_web.json --file_prefix tih_rna_sample_00729_B23MVV7LT4_1
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/create_fi_igvjs.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/fusion-reports/create_fusion_report.py --html_template /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_report_html_template/igvjs_fusion.html --fusions_json /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.fusion_inspector_web.json --input_file_prefix tih_rna_sample_00729_B23MVV7LT4_1 --html_output /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.fusion_inspector_web.html
Warning - not locating file: /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.gmap_trinity_GG.fusions.gff3.bed
Execution Time = 0.02 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/fusion-reports/create_fusion_report.py --html_template /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_report_html_template/igvjs_fusion.html --fusions_json /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.fusion_inspector_web.json --input_file_prefix tih_rna_sample_00729_B23MVV7LT4_1 --html_output /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.fusion_inspector_web.html
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/fusion_reports_html.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/FusionAnnotator/FusionAnnotator --annotate /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.FusionInspector.fusions.abridged.tsv --genome_lib_dir /tmp/nxf.2slL2KydIu/ctat_genome_lib_build_dir > /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.FusionInspector.fusions.abridged.tsv.annotated
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionAnnotator/FusionAnnotator --annotate /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.FusionInspector.fusions.abridged.tsv --genome_lib_dir /tmp/nxf.2slL2KydIu/ctat_genome_lib_build_dir > /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.FusionInspector.fusions.abridged.tsv.annotated
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/fusion_annotator.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.FusionInspector.fusions.abridged.tsv.annotated --genome_lib_dir /tmp/nxf.2slL2KydIu/ctat_genome_lib_build_dir > /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.FusionInspector.fusions.abridged.tsv.annotated.coding_effect
WARNING, no entry stored in dbm for [ENSG00000226049.3]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [ENSG00000236438.7]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.FusionInspector.fusions.abridged.tsv.annotated --genome_lib_dir /tmp/nxf.2slL2KydIu/ctat_genome_lib_build_dir > /tmp/nxf.2slL2KydIu/tih_rna_sample_00729_B23MVV7LT4_1.FusionInspector.fusions.abridged.tsv.annotated.coding_effect
Running: touch /tmp/nxf.2slL2KydIu/chckpts_dir/fusion_coding_region_effect.ok
ls: cannot access 'IGV_inputs': No such file or directory