Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/3a2641bc9d8f643695e473b5e1e05f/tih_rna_sample_00572_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/e88fd7fc7045f143707b3a331bf8bc/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/c481ba1be36de9095e9e063e2528d5/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/c481ba1be36de9095e9e063e2528d5/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/d3c4889fac8bddf20c6ee2cee3691b/tih_rna_sample_00572_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 228283461
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00572_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	228283461
Known Splicing Events:	225372107
Partial Novel Splicing Events:	1416396
Novel Splicing Events:	1407939
Filtered Splicing Events:	87019

Total splicing  Junctions:	492417
Known Splicing Junctions:	269597
Partial Novel Splicing Junctions:	139226
Novel Splicing Junctions:	83594

===================================================================
Create BED file ...
Create Interact file ...