Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/b7995394245b50d10f12365573578b/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/d1a6f83cd99cc2195081b36a6627cc/tih_rna_sample_00731_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/b7995394245b50d10f12365573578b/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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Processed 590000000 records
paired = 292591052
unpaired = 5238015
MERGED PAIRED END READS = 292591052
MATES PROCESSED = 590420119
TOTAL READS     = 297829067
DISTINCT READS  = 1.41744e+08
DISTINCT COUNTS = 671
MAX COUNT       = 1247361
COUNTS OF 1     = 7.55602e+07
MAX TERMS       = 100
OBSERVED COUNTS (1247362)
1	75560224
2	33338331
3	15338534
4	7438027
5	3834647
6	2113994
7	1239851
8	769266
9	504298
10	344836
11	245169
12	180030
13	135696
14	105838
15	83593
16	67055
17	54768
18	45538
19	37705
20	32098
21	27385
22	23411
23	20481
24	17936
25	15575
26	13730
27	12244
28	10871
29	9811
30	8577
31	7784
32	7102
33	6442
34	5978
35	5307
36	4867
37	4546
38	4071
39	3654
40	3397
41	3226
42	2936
43	2774
44	2542
45	2353
46	2221
47	2083
48	1906
49	1819
50	1741
51	1585
52	1540
53	1378
54	1342
55	1276
56	1196
57	1080
58	1027
59	986
60	936
61	933
62	832
63	875
64	752
65	744
66	786
67	696
68	667
69	571
70	590
71	580
72	506
73	518
74	508
75	434
76	458
77	406
78	380
79	382
80	392
81	347
82	338
83	346
84	345
85	302
86	292
87	280
88	294
89	294
90	274
91	259
92	228
93	214
94	223
95	223
96	200
97	176
98	181
99	186
100	166
101	166
102	174
103	159
104	168
105	128
106	148
107	143
108	136
109	148
110	138
111	135
112	133
113	106
114	119
115	120
116	109
117	116
118	105
119	93
120	122
121	115
122	75
123	91
124	80
125	91
126	80
127	87
128	70
129	74
130	72
131	81
132	76
133	56
134	58
135	69
136	73
137	51
138	64
139	63
140	63
141	44
142	66
143	50
144	50
145	65
146	43
147	47
148	54
149	47
150	45
151	42
152	49
153	53
154	37
155	45
156	39
157	56
158	41
159	39
160	43
161	45
162	33
163	35
164	27
165	35
166	32
167	33
168	24
169	41
170	33
171	24
172	36
173	26
174	28
175	23
176	38
177	30
178	23
179	16
180	31
181	21
182	22
183	27
184	20
185	28
186	21
187	28
188	18
189	26
190	15
191	18
192	33
193	16
194	31
195	12
196	10
197	18
198	18
199	16
200	13
201	19
202	18
203	13
204	17
205	23
206	11
207	18
208	11
209	18
210	18
211	13
212	23
213	6
214	11
215	24
216	12
217	4
218	10
219	8
220	11
221	16
222	12
223	13
224	17
225	13
226	18
227	11
228	10
229	11
230	11
231	15
232	18
233	9
234	18
235	11
236	9
237	12
238	14
239	10
240	8
241	7
242	6
243	8
244	6
245	13
246	7
247	6
248	12
249	12
250	10
251	9
252	8
253	10
254	7
255	10
256	5
257	7
258	12
259	6
260	6
261	6
262	12
263	4
264	7
265	8
266	6
267	7
268	19
269	7
270	3
271	8
272	5
273	9
274	6
275	6
276	10
277	6
278	7
279	9
280	7
281	8
282	7
283	9
284	7
285	8
286	2
287	5
288	13
289	3
290	6
291	5
292	6
293	3
294	12
295	9
296	9
297	3
298	7
299	6
300	1
301	5
302	5
303	2
304	1
305	3
306	1
307	2
308	4
309	4
310	3
311	2
312	6
313	3
314	4
315	3
316	1
317	2
318	4
319	12
320	7
321	3
322	1
323	2
324	4
325	2
326	4
327	5
328	3
329	2
330	1
331	5
332	2
333	5
334	3
335	5
336	3
337	4
338	1
339	4
340	6
342	3
343	2
344	2
345	5
346	3
347	3
348	1
349	2
350	2
351	3
352	4
353	1
355	3
356	4
357	2
358	1
359	1
360	2
361	3
362	2
363	2
364	4
365	5
366	1
367	3
369	1
370	4
371	4
372	2
373	3
374	2
376	1
377	2
378	3
380	6
382	2
384	4
385	2
386	3
387	3
390	1
391	1
392	1
393	1
394	1
395	1
396	2
398	3
399	4
400	5
401	2
403	3
404	3
405	1
406	2
407	1
409	5
410	1
411	1
412	3
413	1
414	2
415	2
416	1
418	1
419	1
421	3
422	3
423	2
424	1
425	1
426	1
428	1
429	4
433	2
434	1
436	1
437	3
439	3
440	1
443	2
444	1
447	1
449	3
452	4
453	2
455	1
456	2
458	4
459	1
461	1
463	3
464	2
465	1
466	1
468	3
470	1
471	1
473	1
475	1
476	1
477	3
478	1
479	5
481	2
482	3
488	1
490	1
491	2
493	3
494	2
496	2
497	2
498	2
499	1
501	1
502	1
503	1
504	2
508	1
510	1
511	1
514	2
520	2
521	1
523	2
524	1
527	1
528	1
529	1
535	1
536	1
539	2
540	2
542	1
543	2
544	2
548	1
549	2
553	2
554	1
555	1
556	1
559	1
560	1
561	1
564	1
565	1
567	2
568	1
578	1
582	2
584	2
585	1
586	1
587	1
588	1
589	1
594	1
596	1
597	1
598	2
599	1
600	2
603	2
607	1
608	2
612	1
613	2
621	1
622	1
624	1
630	1
642	1
643	1
645	1
649	1
652	1
653	3
655	1
658	1
662	1
664	1
670	1
674	1
677	4
684	1
687	1
694	2
697	1
702	1
703	1
705	1
715	1
717	1
727	2
732	1
745	2
755	1
756	1
757	1
759	1
763	1
779	2
795	1
801	1
808	3
810	1
811	1
815	1
820	1
822	1
828	1
841	1
846	1
857	1
882	1
884	1
888	1
895	1
902	1
920	1
932	1
937	1
939	1
945	2
950	1
976	1
1004	1
1005	1
1014	1
1042	1
1050	1
1060	1
1068	1
1081	1
1110	1
1135	1
1144	1
1145	1
1149	1
1177	2
1189	1
1226	1
1262	1
1343	1
1345	1
1369	1
1432	1
1565	1
1609	1
1624	1
1641	1
1719	1
1737	1
1751	1
1789	1
1790	1
1807	1
1821	1
1828	1
1866	1
1870	1
1879	1
1901	1
1908	1
1917	1
1944	1
1955	1
1971	1
1978	1
1993	1
1997	1
1999	1
2051	1
2057	1
2070	1
2094	1
2097	1
2106	1
2129	1
2147	1
2183	1
2198	1
2201	1
2237	1
2240	1
2249	1
2252	1
2253	1
2255	1
2260	1
2285	1
2342	1
2348	1
2362	1
2375	1
2420	1
2440	1
2467	1
2541	1
2548	1
2597	1
2600	1
2624	1
2673	1
2680	1
2688	1
2765	1
2766	1
2822	1
2840	1
2863	1
2898	1
2930	1
3050	1
3166	1
3274	1
3297	1
3428	1
3433	1
3645	1
3756	1
4151	1
5033	1
5661	1
7334	1
8460	1
11698	1
41026	1
1247361	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
.........._....._....................._....._..._.......................
...................._.............
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]