Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/a7db4c2c58d56ff5f10441cb1f1b5c/tih_rna_sample_00666_B23MVV7LT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/656ebf37727ef0452ff147cf71ba81/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/656ebf37727ef0452ff147cf71ba81/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory