Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/d74e72c44e47bbb6a5813db89379a2/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/f65016ba237998926cb8c2773f2ba9/tih_rna_sample_00574_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/d74e72c44e47bbb6a5813db89379a2/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/6ca63cda42c9a8f48b82024fc6f569/tih_rna_sample_00574_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00574_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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