File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/dcd7a49f0eaac99857dc429248c49b/.command.log
Size
4.0 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (tih_rna_sample_00572_B23MVV7LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/394b12b566a5029169cede7b2097ff/tih_rna_sample_00572_B23MVV7LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-7324c8a8-f474-426a-a5c9-715912777f94/c4/140ab148cdcf1ed9bdffe91f534e47/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/dcd7a49f0eaac99857dc429248c49b/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/24fda870baf83ff8378b458d423991/tih_rna_sample_00572_B23MVV7LT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/dcd7a49f0eaac99857dc429248c49b/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
AL669831.1--SEPTIN14
starfusion
arriba
TLK2P1--AC110079.1
starfusion
TLK2--AC240565.1
starfusion
STX16--NPEPL1
starfusion
arriba
PARG--BMS1
arriba
TVP23C--CDRT4
arriba
C1QTNF3--AMACR
arriba
NOTCH2--FTH1P22
arriba
NOTCH2--AL157904.1
arriba
LYSMD4--AC090825.1
arriba
LYSMD4--AC084855.1
arriba
AC092807.3--DDAH1
arriba
PCDHA3--PCDHAC2
arriba
PCDHA3--PCDHAC1
arriba
PCDHA3--PCDHA13
arriba

  0%|          | 0/15 [00:00<?, ?it/s]
Processing AL669831.1--SEPTIN14:   0%|          | 0/15 [00:00<?, ?it/s]
Processing AL669831.1--SEPTIN14:   7%|▋         | 1/15 [00:00<00:01,  9.07it/s]
Processing TLK2P1--AC110079.1:   7%|▋         | 1/15 [00:00<00:01,  9.07it/s]  
Processing TLK2P1--AC110079.1:  13%|█▎        | 2/15 [00:00<00:01,  9.33it/s]
Processing TLK2--AC240565.1:  13%|█▎        | 2/15 [00:00<00:01,  9.33it/s]  
Processing TLK2--AC240565.1:  20%|██        | 3/15 [00:00<00:01,  9.44it/s]
Processing STX16--NPEPL1:  20%|██        | 3/15 [00:00<00:01,  9.44it/s]   
Processing STX16--NPEPL1:  27%|██▋       | 4/15 [00:00<00:01,  9.49it/s]
Processing PARG--BMS1:  27%|██▋       | 4/15 [00:00<00:01,  9.49it/s]   
Processing PARG--BMS1:  33%|███▎      | 5/15 [00:00<00:01,  9.53it/s]
Processing TVP23C--CDRT4:  33%|███▎      | 5/15 [00:00<00:01,  9.53it/s]
Processing TVP23C--CDRT4:  40%|████      | 6/15 [00:00<00:00,  9.55it/s]
Processing C1QTNF3--AMACR:  40%|████      | 6/15 [00:00<00:00,  9.55it/s]
Processing C1QTNF3--AMACR:  47%|████▋     | 7/15 [00:00<00:00,  9.56it/s]
Processing NOTCH2--FTH1P22:  47%|████▋     | 7/15 [00:00<00:00,  9.56it/s]
Processing NOTCH2--FTH1P22:  53%|█████▎    | 8/15 [00:00<00:00,  9.57it/s]
Processing NOTCH2--AL157904.1:  53%|█████▎    | 8/15 [00:00<00:00,  9.57it/s]
Processing NOTCH2--AL157904.1:  60%|██████    | 9/15 [00:00<00:00,  9.58it/s]
Processing LYSMD4--AC090825.1:  60%|██████    | 9/15 [00:00<00:00,  9.58it/s]
Processing LYSMD4--AC090825.1:  67%|██████▋   | 10/15 [00:01<00:00,  9.58it/s]
Processing LYSMD4--AC084855.1:  67%|██████▋   | 10/15 [00:01<00:00,  9.58it/s]
Processing LYSMD4--AC084855.1:  73%|███████▎  | 11/15 [00:01<00:00,  9.59it/s]
Processing AC092807.3--DDAH1:  73%|███████▎  | 11/15 [00:01<00:00,  9.59it/s] 
Processing AC092807.3--DDAH1:  80%|████████  | 12/15 [00:01<00:00,  9.59it/s]
Processing PCDHA3--PCDHAC2:  80%|████████  | 12/15 [00:01<00:00,  9.59it/s]  
Processing PCDHA3--PCDHAC2:  87%|████████▋ | 13/15 [00:01<00:00,  9.59it/s]
Processing PCDHA3--PCDHAC1:  87%|████████▋ | 13/15 [00:01<00:00,  9.59it/s]
Processing PCDHA3--PCDHAC1:  93%|█████████▎| 14/15 [00:01<00:00,  9.59it/s]
Processing PCDHA3--PCDHA13:  93%|█████████▎| 14/15 [00:01<00:00,  9.59it/s]
Processing PCDHA3--PCDHA13: 100%|██████████| 15/15 [00:01<00:00,  9.59it/s]
Processing PCDHA3--PCDHA13: 100%|██████████| 15/15 [00:01<00:00,  9.55it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory