File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/981b12b4a01501f7281b4fcfec92dc/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 10:01:14
                             Started mapping on |	Jun 08 10:07:55
                                    Finished on |	Jun 08 11:26:56
       Mapping speed, Million of reads per hour |	224.76

                          Number of input reads |	296000167
                      Average input read length |	256
                                    UNIQUE READS:
                   Uniquely mapped reads number |	275472752
                        Uniquely mapped reads % |	93.07%
                          Average mapped length |	256.03
                       Number of splices: Total |	296672593
            Number of splices: Annotated (sjdb) |	292262173
                       Number of splices: GT/AG |	293090776
                       Number of splices: GC/AG |	2047826
                       Number of splices: AT/AC |	265135
               Number of splices: Non-canonical |	1268856
                      Mismatch rate per base, % |	0.28%
                         Deletion rate per base |	0.02%
                        Deletion average length |	1.94
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.71
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	16429231
             % of reads mapped to multiple loci |	5.55%
        Number of reads mapped to too many loci |	746287
             % of reads mapped to too many loci |	0.25%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2748650
                 % of reads unmapped: too short |	0.93%
                Number of reads unmapped: other |	603247
                     % of reads unmapped: other |	0.20%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%