.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (tih_rna_sample_00591_B23MVV7LT4_1)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/230483ff18a8436130e04cff47ac09/.command.log
Size: 1.7 KB
Task: NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (tih_rna_sample_00591_B23MVV7LT4_1)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/7d983afc8cf5742e3b3b42ffdf4463/tih_rna_sample_00591_B23MVV7LT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-7324c8a8-f474-426a-a5c9-715912777f94/c4/140ab148cdcf1ed9bdffe91f534e47/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/230483ff18a8436130e04cff47ac09/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/230483ff18a8436130e04cff47ac09/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/4e39ffb7ddb7aee83c5c64f432b7c9/tih_rna_sample_00591_B23MVV7LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

[32mRunning application...[0m
KRT8P48--KRT1
starfusion
TLK2P1--AC110079.1
starfusion
TVP23C--CDRT4
arriba

  0%|          | 0/3 [00:00<?, ?it/s]
Processing KRT8P48--KRT1:   0%|          | 0/3 [00:00<?, ?it/s]
Processing KRT8P48--KRT1:  33%|███▎      | 1/3 [00:00<00:00,  9.10it/s]
Processing TLK2P1--AC110079.1:  33%|███▎      | 1/3 [00:00<00:00,  9.10it/s]
Processing TLK2P1--AC110079.1:  67%|██████▋   | 2/3 [00:00<00:00,  9.38it/s]
Processing TVP23C--CDRT4:  67%|██████▋   | 2/3 [00:00<00:00,  9.38it/s]     
Processing TVP23C--CDRT4: 100%|██████████| 3/3 [00:00<00:00,  9.48it/s]
Processing TVP23C--CDRT4: 100%|██████████| 3/3 [00:00<00:00,  9.42it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory