Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/1dd249f61149e9ff9a5aa1297e6d16/tih_rna_sample_00722_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/e88fd7fc7045f143707b3a331bf8bc/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/35089e1b9bc1f0fb902aadf11ef075/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/35089e1b9bc1f0fb902aadf11ef075/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/dbc0f07c7c78e2ba9c1320339163a4/tih_rna_sample_00722_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 98116602
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00722_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	98116602
Known Splicing Events:	96864422
Partial Novel Splicing Events:	592387
Novel Splicing Events:	600197
Filtered Splicing Events:	59596

Total splicing  Junctions:	254586
Known Splicing Junctions:	191806
Partial Novel Splicing Junctions:	36756
Novel Splicing Junctions:	26024

===================================================================
Create BED file ...
Create Interact file ...