Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/aa5cff961948555dd16fb3087b24c1/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/08bf324c3cf25aebafe8407e410b94/tih_rna_sample_00581_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/aa5cff961948555dd16fb3087b24c1/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 291963740
unpaired = 5579755
MERGED PAIRED END READS = 291963740
MATES PROCESSED = 589507235
TOTAL READS     = 297543495
DISTINCT READS  = 7.43496e+07
DISTINCT COUNTS = 1013
MAX COUNT       = 1164250
COUNTS OF 1     = 2.03573e+07
MAX TERMS       = 100
OBSERVED COUNTS (1164251)
1	20357347
2	14112112
3	10583623
4	7839069
5	5710246
6	4113609
7	2954407
8	2123305
9	1530557
10	1114131
11	820641
12	612470
13	462228
14	354508
15	275393
16	215749
17	170932
18	136960
19	111969
20	91036
21	75921
22	63813
23	53588
24	45490
25	39162
26	33661
27	29256
28	25634
29	22352
30	19976
31	17901
32	15771
33	14096
34	12996
35	11668
36	10422
37	9775
38	8817
39	8228
40	7323
41	6710
42	6274
43	5823
44	5256
45	4907
46	4680
47	4292
48	4083
49	3815
50	3632
51	3345
52	3145
53	2927
54	2805
55	2582
56	2562
57	2439
58	2185
59	2071
60	2066
61	1866
62	1855
63	1790
64	1648
65	1552
66	1450
67	1445
68	1285
69	1329
70	1162
71	1223
72	1167
73	1075
74	1111
75	1011
76	972
77	872
78	923
79	929
80	814
81	797
82	743
83	706
84	704
85	698
86	646
87	558
88	611
89	566
90	550
91	570
92	535
93	547
94	530
95	497
96	464
97	453
98	450
99	399
100	460
101	374
102	396
103	366
104	349
105	355
106	342
107	327
108	340
109	346
110	344
111	284
112	301
113	291
114	311
115	250
116	303
117	262
118	253
119	241
120	241
121	227
122	217
123	212
124	236
125	219
126	182
127	222
128	204
129	184
130	186
131	169
132	180
133	215
134	164
135	183
136	175
137	191
138	166
139	134
140	169
141	140
142	150
143	168
144	115
145	134
146	145
147	129
148	124
149	158
150	149
151	100
152	123
153	132
154	119
155	124
156	112
157	115
158	107
159	91
160	98
161	96
162	94
163	107
164	98
165	114
166	93
167	93
168	91
169	73
170	80
171	85
172	93
173	81
174	99
175	85
176	86
177	78
178	62
179	63
180	90
181	66
182	80
183	74
184	55
185	62
186	67
187	60
188	74
189	60
190	71
191	51
192	71
193	66
194	56
195	62
196	62
197	60
198	59
199	57
200	54
201	48
202	37
203	45
204	41
205	59
206	49
207	52
208	44
209	48
210	45
211	45
212	52
213	44
214	52
215	37
216	43
217	42
218	44
219	26
220	39
221	40
222	36
223	37
224	30
225	48
226	42
227	40
228	44
229	44
230	28
231	30
232	44
233	30
234	32
235	35
236	32
237	35
238	31
239	31
240	32
241	34
242	30
243	31
244	25
245	25
246	30
247	36
248	21
249	34
250	20
251	21
252	24
253	35
254	19
255	21
256	33
257	30
258	20
259	19
260	20
261	20
262	20
263	17
264	25
265	30
266	27
267	22
268	15
269	20
270	18
271	33
272	18
273	25
274	17
275	20
276	18
277	26
278	17
279	17
280	21
281	18
282	20
283	26
284	16
285	17
286	20
287	20
288	18
289	20
290	19
291	20
292	17
293	15
294	14
295	12
296	19
297	8
298	17
299	16
300	15
301	14
302	16
303	21
304	16
305	19
306	9
307	14
308	15
309	13
310	15
311	14
312	15
313	13
314	21
315	13
316	7
317	16
318	16
319	14
320	5
321	11
322	9
323	12
324	16
325	7
326	10
327	11
328	11
329	8
330	10
331	6
332	19
333	15
334	8
335	9
336	9
337	9
338	16
339	14
340	9
341	15
342	10
343	7
344	8
345	12
346	13
347	11
348	5
349	14
350	7
351	8
352	9
353	11
354	15
355	14
356	11
357	9
358	6
359	9
360	9
361	7
362	5
363	11
364	8
365	7
366	8
367	10
368	8
369	2
370	9
371	9
372	5
373	7
374	11
375	11
376	5
377	3
378	4
379	12
380	3
381	8
382	8
383	7
384	12
385	13
386	8
387	3
388	9
389	6
390	7
391	5
392	7
393	9
394	6
395	5
396	5
397	6
398	6
399	8
400	11
401	4
402	5
403	6
404	7
405	5
406	9
407	6
408	5
409	4
410	1
411	7
412	6
413	10
414	5
415	3
416	5
417	5
418	7
419	14
420	8
421	4
422	7
423	5
424	6
425	7
426	7
427	5
428	9
429	6
430	7
431	7
432	6
433	7
434	2
435	6
436	6
437	2
438	8
439	8
440	5
441	4
442	4
443	3
444	6
445	4
446	4
447	6
448	3
449	4
450	4
451	6
452	9
453	7
454	11
455	9
456	3
457	6
458	8
459	5
460	2
461	7
462	6
463	4
464	4
465	6
466	2
467	4
468	2
469	1
470	4
471	4
472	4
473	4
474	2
475	5
476	2
477	2
478	6
479	1
480	3
481	3
482	5
483	5
484	3
485	1
486	1
488	1
489	3
490	4
491	2
492	5
493	3
494	1
495	8
496	4
497	1
498	2
499	5
500	4
501	2
502	1
503	3
505	1
506	4
507	4
508	3
509	3
510	4
511	5
512	2
513	4
514	2
515	10
516	3
517	2
518	2
519	3
520	4
521	3
522	5
523	4
524	8
525	2
526	2
527	3
528	3
529	5
530	5
531	5
532	3
533	1
534	2
535	1
536	1
537	6
538	1
539	2
540	2
542	1
543	3
544	1
545	4
546	1
547	2
548	3
550	4
551	3
552	5
553	2
554	1
555	2
556	4
557	6
558	2
559	2
560	1
561	3
562	2
563	9
564	1
565	1
566	1
567	4
568	2
569	2
570	3
571	2
572	2
573	2
574	4
575	1
576	2
578	4
579	2
580	1
582	3
583	3
585	3
587	4
588	1
589	1
590	2
591	1
592	1
593	1
594	4
595	2
596	4
597	2
598	2
599	1
600	1
602	3
603	2
604	2
605	1
607	1
608	4
610	3
611	3
612	2
613	5
614	3
615	2
616	3
617	2
618	3
621	3
622	1
623	3
625	2
626	1
627	2
628	4
629	3
630	1
631	2
632	1
633	2
634	4
635	3
638	1
640	1
641	2
642	1
643	3
644	2
645	1
646	1
647	1
648	1
650	2
651	1
652	4
653	1
654	2
658	2
659	1
660	1
661	1
662	3
663	2
664	2
666	1
667	1
668	1
669	1
672	2
673	2
674	1
676	4
677	3
678	1
679	2
680	1
682	2
684	1
685	2
689	1
690	2
691	2
692	1
693	1
694	2
695	1
696	1
697	2
698	1
700	3
701	2
702	1
703	2
706	1
707	2
710	1
712	1
713	2
715	1
717	4
719	2
720	1
721	1
724	1
725	2
728	3
729	2
730	1
732	3
733	3
734	1
736	1
737	2
738	1
739	1
741	1
742	2
744	1
748	1
750	1
752	1
753	1
754	1
758	1
759	1
761	4
763	1
765	1
766	1
767	1
768	2
769	2
771	1
772	1
777	1
778	1
787	1
792	4
794	1
797	1
798	1
799	1
804	2
809	1
810	1
811	1
812	1
814	1
816	1
818	1
819	1
820	2
824	1
825	1
827	3
831	1
835	1
836	2
839	1
843	1
844	2
845	1
846	1
848	1
853	1
855	1
856	2
857	2
858	2
860	1
861	1
863	1
867	1
868	1
870	1
871	1
876	4
877	1
878	1
880	2
881	1
889	1
896	1
898	1
902	1
905	1
907	1
908	2
910	1
919	2
921	1
923	1
925	1
927	1
928	1
929	1
931	1
932	3
933	1
934	2
936	1
937	2
938	1
939	1
943	1
948	2
949	2
951	2
954	1
956	1
957	1
960	1
967	1
969	1
972	1
975	1
979	2
980	1
981	1
982	1
990	1
998	1
1001	1
1004	1
1009	1
1012	1
1014	2
1016	1
1018	1
1022	1
1025	1
1029	1
1030	1
1034	2
1041	1
1043	1
1053	1
1055	1
1056	1
1059	1
1070	1
1076	1
1079	2
1082	1
1085	1
1087	1
1090	1
1091	1
1107	1
1108	1
1114	1
1123	1
1125	1
1132	1
1140	1
1142	1
1144	3
1151	1
1156	1
1161	1
1166	1
1169	1
1171	1
1172	1
1175	1
1176	2
1180	1
1182	1
1195	1
1196	1
1199	1
1202	1
1203	1
1206	1
1208	1
1215	1
1219	1
1227	1
1232	1
1235	1
1239	1
1249	1
1258	1
1265	1
1267	1
1268	1
1272	2
1273	2
1275	1
1288	1
1289	1
1292	1
1299	1
1310	1
1312	1
1331	1
1333	1
1334	1
1340	1
1341	1
1350	1
1359	1
1372	1
1373	1
1376	1
1378	1
1382	1
1384	1
1387	1
1397	1
1414	2
1420	1
1433	1
1434	1
1447	1
1452	1
1466	1
1481	1
1486	1
1488	1
1490	1
1495	1
1498	1
1500	1
1511	1
1521	1
1534	1
1537	1
1540	1
1549	1
1551	1
1553	1
1555	1
1563	1
1564	1
1566	2
1586	1
1587	1
1588	1
1590	1
1605	1
1625	1
1631	1
1638	1
1640	1
1642	1
1655	1
1663	1
1673	1
1684	1
1701	1
1724	1
1728	1
1743	1
1749	1
1755	1
1764	1
1765	1
1773	1
1802	1
1805	1
1815	1
1861	1
1863	1
1866	1
1868	1
1871	1
1882	1
1888	1
1891	2
1901	1
1907	1
1908	1
1917	1
1924	1
1932	1
1933	1
1936	1
1940	1
1943	1
1963	1
1964	1
1968	1
1984	1
1993	1
2021	1
2046	1
2103	1
2112	1
2122	1
2142	1
2145	1
2174	1
2184	1
2185	1
2238	1
2244	1
2255	1
2292	1
2307	1
2316	1
2339	1
2390	1
2449	1
2467	1
2500	1
2550	1
2559	1
2570	1
2651	1
2693	1
2703	1
2709	1
2751	1
2848	1
2914	1
2933	1
2941	1
3032	1
3076	1
3241	1
3284	1
3360	1
3523	1
3529	1
3924	1
4145	1
5088	1
5598	1
5999	1
10299	1
22640	1
24386	1
1164250	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
._........................_...._........._..._............_....._.......
.._._........._.._....._..........._.....
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]