File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/201af1f44f31b75cb5f032ba837e87/.command.log
Size
3.5 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (tih_rna_sample_00586_B23MVV7LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/e822a4eb3141d363fb1fd1f7aaf8fd/tih_rna_sample_00586_B23MVV7LT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-7324c8a8-f474-426a-a5c9-715912777f94/c4/140ab148cdcf1ed9bdffe91f534e47/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/201af1f44f31b75cb5f032ba837e87/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/201af1f44f31b75cb5f032ba837e87/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/5910dc97528086d75e7e5e128fff1d/tih_rna_sample_00586_B23MVV7LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
ARHGAP11A--ULK4P2
starfusion
TLK2P1--AC110079.1
starfusion
ARHGAP11B--AC019322.1
starfusion
NLRP2--ADAMTS13
starfusion
PDXDC1--NPIPB5
starfusion
TVP23C--CDRT4
arriba
ARHGAP11B--CHRFAM7A
arriba
AC091057.6--CHRFAM7A
arriba
AC015911.9--SLFN12L
arriba
ARHGAP11B--ULK4
arriba
AC091057.6--ULK4
arriba
CRYZL2P--SEC16B
arriba

  0%|          | 0/12 [00:00<?, ?it/s]
Processing ARHGAP11A--ULK4P2:   0%|          | 0/12 [00:00<?, ?it/s]
Processing ARHGAP11A--ULK4P2:   8%|▊         | 1/12 [00:00<00:01,  9.26it/s]
Processing TLK2P1--AC110079.1:   8%|▊         | 1/12 [00:00<00:01,  9.26it/s]
Processing TLK2P1--AC110079.1:  17%|█▋        | 2/12 [00:00<00:01,  9.49it/s]
Processing ARHGAP11B--AC019322.1:  17%|█▋        | 2/12 [00:00<00:01,  9.49it/s]
Processing ARHGAP11B--AC019322.1:  25%|██▌       | 3/12 [00:00<00:00,  9.57it/s]
Processing NLRP2--ADAMTS13:  25%|██▌       | 3/12 [00:00<00:00,  9.57it/s]      
Processing NLRP2--ADAMTS13:  33%|███▎      | 4/12 [00:00<00:00,  9.61it/s]
Processing PDXDC1--NPIPB5:  33%|███▎      | 4/12 [00:00<00:00,  9.61it/s] 
Processing PDXDC1--NPIPB5:  42%|████▏     | 5/12 [00:00<00:00,  9.63it/s]
Processing TVP23C--CDRT4:  42%|████▏     | 5/12 [00:00<00:00,  9.63it/s] 
Processing TVP23C--CDRT4:  50%|█████     | 6/12 [00:00<00:00,  9.64it/s]
Processing ARHGAP11B--CHRFAM7A:  50%|█████     | 6/12 [00:00<00:00,  9.64it/s]
Processing ARHGAP11B--CHRFAM7A:  58%|█████▊    | 7/12 [00:00<00:00,  9.64it/s]
Processing AC091057.6--CHRFAM7A:  58%|█████▊    | 7/12 [00:00<00:00,  9.64it/s]
Processing AC091057.6--CHRFAM7A:  67%|██████▋   | 8/12 [00:00<00:00,  9.65it/s]
Processing AC015911.9--SLFN12L:  67%|██████▋   | 8/12 [00:00<00:00,  9.65it/s] 
Processing AC015911.9--SLFN12L:  75%|███████▌  | 9/12 [00:00<00:00,  9.65it/s]
Processing ARHGAP11B--ULK4:  75%|███████▌  | 9/12 [00:00<00:00,  9.65it/s]    
Processing ARHGAP11B--ULK4:  83%|████████▎ | 10/12 [00:01<00:00,  9.66it/s]
Processing AC091057.6--ULK4:  83%|████████▎ | 10/12 [00:01<00:00,  9.66it/s]
Processing AC091057.6--ULK4:  92%|█████████▏| 11/12 [00:01<00:00,  9.66it/s]
Processing CRYZL2P--SEC16B:  92%|█████████▏| 11/12 [00:01<00:00,  9.66it/s] 
Processing CRYZL2P--SEC16B: 100%|██████████| 12/12 [00:01<00:00,  9.66it/s]
Processing CRYZL2P--SEC16B: 100%|██████████| 12/12 [00:01<00:00,  9.63it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory