File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/2f7fdbada6b6f0b517230ead496dd0/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 10:30:16
                             Started mapping on |	Jun 08 10:36:53
                                    Finished on |	Jun 08 12:06:55
       Mapping speed, Million of reads per hour |	196.96

                          Number of input reads |	295547503
                      Average input read length |	246
                                    UNIQUE READS:
                   Uniquely mapped reads number |	285529245
                        Uniquely mapped reads % |	96.61%
                          Average mapped length |	245.63
                       Number of splices: Total |	340805092
            Number of splices: Annotated (sjdb) |	336108317
                       Number of splices: GT/AG |	336647029
                       Number of splices: GC/AG |	1989932
                       Number of splices: AT/AC |	226815
               Number of splices: Non-canonical |	1941316
                      Mismatch rate per base, % |	0.25%
                         Deletion rate per base |	0.04%
                        Deletion average length |	2.03
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.54
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	6434114
             % of reads mapped to multiple loci |	2.18%
        Number of reads mapped to too many loci |	466416
             % of reads mapped to too many loci |	0.16%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2762525
                 % of reads unmapped: too short |	0.93%
                Number of reads unmapped: other |	355203
                     % of reads unmapped: other |	0.12%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%