Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT tih_rna_sample_00599_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT tih_rna_sample_00599_B23MVV7LT4_1.md.bam --METRICS_FILE tih_rna_sample_00599_B23MVV7LT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:32:33.179 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:32:33 GMT 2026] MarkDuplicates --INPUT tih_rna_sample_00599_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT tih_rna_sample_00599_B23MVV7LT4_1.md.bam --METRICS_FILE tih_rna_sample_00599_B23MVV7LT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:32:33 GMT 2026] Executing as ?@nf-fd111936d4cd7aa452dfbbdd4d8f5cd8-d1730-jx8pm on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:32:33 MarkDuplicates Start of doWork freeMemory: 105827824; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:32:33 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:32:33 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:32:37 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:03s. Time for last 1,000,000: 3s. Last read position: chr1:1,311,355
INFO 2026-06-08 08:32:37 MarkDuplicates Tracking 2278 as yet unmatched pairs. 82 records in RAM.
INFO 2026-06-08 08:32:39 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:1,659,452
INFO 2026-06-08 08:32:39 MarkDuplicates Tracking 4873 as yet unmatched pairs. 213 records in RAM.
INFO 2026-06-08 08:32:42 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 2s. Last read position: chr1:6,186,678
INFO 2026-06-08 08:32:42 MarkDuplicates Tracking 7333 as yet unmatched pairs. 361 records in RAM.
INFO 2026-06-08 08:32:44 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 2s. Last read position: chr1:8,361,053
INFO 2026-06-08 08:32:44 MarkDuplicates Tracking 9827 as yet unmatched pairs. 457 records in RAM.
INFO 2026-06-08 08:32:47 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 2s. Last read position: chr1:10,654,009
INFO 2026-06-08 08:32:47 MarkDuplicates Tracking 11632 as yet unmatched pairs. 76 records in RAM.
INFO 2026-06-08 08:32:49 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 2s. Last read position: chr1:12,311,497
INFO 2026-06-08 08:32:49 MarkDuplicates Tracking 13913 as yet unmatched pairs. 116 records in RAM.
INFO 2026-06-08 08:32:51 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 1s. Last read position: chr1:16,207,683
INFO 2026-06-08 08:32:51 MarkDuplicates Tracking 15917 as yet unmatched pairs. 69 records in RAM.
INFO 2026-06-08 08:32:54 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 2s. Last read position: chr1:18,956,124
INFO 2026-06-08 08:32:54 MarkDuplicates Tracking 17813 as yet unmatched pairs. 6 records in RAM.
INFO 2026-06-08 08:32:55 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 1s. Last read position: chr1:20,771,030
INFO 2026-06-08 08:32:55 MarkDuplicates Tracking 20116 as yet unmatched pairs. 90 records in RAM.
INFO 2026-06-08 08:32:58 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 2s. Last read position: chr1:21,864,166
INFO 2026-06-08 08:32:58 MarkDuplicates Tracking 22434 as yet unmatched pairs. 234 records in RAM.
INFO 2026-06-08 08:33:01 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 2s. Last read position: chr1:23,441,420
INFO 2026-06-08 08:33:01 MarkDuplicates Tracking 24654 as yet unmatched pairs. 74 records in RAM.
INFO 2026-06-08 08:33:03 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 2s. Last read position: chr1:26,472,582
INFO 2026-06-08 08:33:03 MarkDuplicates Tracking 26789 as yet unmatched pairs. 234 records in RAM.
INFO 2026-06-08 08:33:05 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 2s. Last read position: chr1:27,409,813
INFO 2026-06-08 08:33:05 MarkDuplicates Tracking 29161 as yet unmatched pairs. 389 records in RAM.
INFO 2026-06-08 08:33:08 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 2s. Last read position: chr1:30,933,191
INFO 2026-06-08 08:33:08 MarkDuplicates Tracking 31233 as yet unmatched pairs. 268 records in RAM.
INFO 2026-06-08 08:33:10 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 2s. Last read position: chr1:32,204,642
INFO 2026-06-08 08:33:10 MarkDuplicates Tracking 33387 as yet unmatched pairs. 25 records in RAM.
INFO 2026-06-08 08:33:12 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 2s. Last read position: chr1:33,334,152
INFO 2026-06-08 08:33:12 MarkDuplicates Tracking 35571 as yet unmatched pairs. 90 records in RAM.
INFO 2026-06-08 08:33:14 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 2s. Last read position: chr1:36,293,917
INFO 2026-06-08 08:33:14 MarkDuplicates Tracking 37925 as yet unmatched pairs. 180 records in RAM.
INFO 2026-06-08 08:33:16 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 1s. Last read position: chr1:39,368,195
INFO 2026-06-08 08:33:16 MarkDuplicates Tracking 40137 as yet unmatched pairs. 95 records in RAM.
INFO 2026-06-08 08:33:18 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 2s. Last read position: chr1:42,191,400
INFO 2026-06-08 08:33:18 MarkDuplicates Tracking 42395 as yet unmatched pairs. 273 records in RAM.
INFO 2026-06-08 08:33:21 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 2s. Last read position: chr1:43,604,910
INFO 2026-06-08 08:33:21 MarkDuplicates Tracking 44937 as yet unmatched pairs. 531 records in RAM.
INFO 2026-06-08 08:33:23 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:45,013,634
INFO 2026-06-08 08:33:23 MarkDuplicates Tracking 46807 as yet unmatched pairs. 33 records in RAM.
INFO 2026-06-08 08:33:25 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 1s. Last read position: chr1:50,326,208
INFO 2026-06-08 08:33:25 MarkDuplicates Tracking 48785 as yet unmatched pairs. 9 records in RAM.
INFO 2026-06-08 08:33:26 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr1:54,139,918
INFO 2026-06-08 08:33:26 MarkDuplicates Tracking 51075 as yet unmatched pairs. 17 records in RAM.
INFO 2026-06-08 08:33:28 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 2s. Last read position: chr1:64,733,784
INFO 2026-06-08 08:33:28 MarkDuplicates Tracking 53201 as yet unmatched pairs. 9 records in RAM.
INFO 2026-06-08 08:33:30 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:85,581,938
INFO 2026-06-08 08:33:30 MarkDuplicates Tracking 55502 as yet unmatched pairs. 257 records in RAM.
INFO 2026-06-08 08:33:32 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:100,140,854
INFO 2026-06-08 08:33:32 MarkDuplicates Tracking 57241 as yet unmatched pairs. 47 records in RAM.
INFO 2026-06-08 08:33:35 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 2s. Last read position: chr1:109,491,059
INFO 2026-06-08 08:33:35 MarkDuplicates Tracking 59272 as yet unmatched pairs. 41 records in RAM.
INFO 2026-06-08 08:33:37 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 2s. Last read position: chr1:113,811,985
INFO 2026-06-08 08:33:37 MarkDuplicates Tracking 61518 as yet unmatched pairs. 263 records in RAM.
INFO 2026-06-08 08:33:39 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:119,034,109
INFO 2026-06-08 08:33:39 MarkDuplicates Tracking 63435 as yet unmatched pairs. 58 records in RAM.
INFO 2026-06-08 08:33:41 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:119,967,499
INFO 2026-06-08 08:33:41 MarkDuplicates Tracking 66264 as yet unmatched pairs. 590 records in RAM.
INFO 2026-06-08 08:33:43 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:145,301,166
INFO 2026-06-08 08:33:43 MarkDuplicates Tracking 66922 as yet unmatched pairs. 20 records in RAM.
INFO 2026-06-08 08:33:44 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:146,298,516
INFO 2026-06-08 08:33:44 MarkDuplicates Tracking 68035 as yet unmatched pairs. 11 records in RAM.
INFO 2026-06-08 08:33:46 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:148,749,307
INFO 2026-06-08 08:33:46 MarkDuplicates Tracking 69180 as yet unmatched pairs. 126 records in RAM.
INFO 2026-06-08 08:33:47 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:149,852,986
INFO 2026-06-08 08:33:47 MarkDuplicates Tracking 70107 as yet unmatched pairs. 33 records in RAM.
INFO 2026-06-08 08:33:50 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 3s. Last read position: chr1:150,796,625
INFO 2026-06-08 08:33:50 MarkDuplicates Tracking 73299 as yet unmatched pairs. 1121 records in RAM.
INFO 2026-06-08 08:33:52 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 2s. Last read position: chr1:151,520,464
INFO 2026-06-08 08:33:52 MarkDuplicates Tracking 74532 as yet unmatched pairs. 61 records in RAM.
INFO 2026-06-08 08:33:54 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:153,969,332
INFO 2026-06-08 08:33:54 MarkDuplicates Tracking 76655 as yet unmatched pairs. 176 records in RAM.
INFO 2026-06-08 08:33:56 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:154,584,973
INFO 2026-06-08 08:33:56 MarkDuplicates Tracking 78658 as yet unmatched pairs. 233 records in RAM.
INFO 2026-06-08 08:33:57 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:155,189,014
INFO 2026-06-08 08:33:57 MarkDuplicates Tracking 80552 as yet unmatched pairs. 107 records in RAM.
INFO 2026-06-08 08:33:59 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:155,660,145
INFO 2026-06-08 08:33:59 MarkDuplicates Tracking 83004 as yet unmatched pairs. 946 records in RAM.
INFO 2026-06-08 08:34:01 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 2s. Last read position: chr1:156,134,856
INFO 2026-06-08 08:34:01 MarkDuplicates Tracking 85200 as yet unmatched pairs. 998 records in RAM.
INFO 2026-06-08 08:34:04 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 3s. Last read position: chr1:156,595,306
INFO 2026-06-08 08:34:04 MarkDuplicates Tracking 86639 as yet unmatched pairs. 62 records in RAM.
INFO 2026-06-08 08:34:06 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:160,290,130
INFO 2026-06-08 08:34:06 MarkDuplicates Tracking 89489 as yet unmatched pairs. 638 records in RAM.
INFO 2026-06-08 08:34:08 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 2s. Last read position: chr1:163,708,416
INFO 2026-06-08 08:34:08 MarkDuplicates Tracking 90933 as yet unmatched pairs. 4 records in RAM.
INFO 2026-06-08 08:34:10 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 2s. Last read position: chr1:171,670,502
INFO 2026-06-08 08:34:10 MarkDuplicates Tracking 92796 as yet unmatched pairs. 6 records in RAM.
INFO 2026-06-08 08:34:12 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr1:180,873,874
INFO 2026-06-08 08:34:12 MarkDuplicates Tracking 94975 as yet unmatched pairs. 71 records in RAM.
INFO 2026-06-08 08:34:14 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr1:186,322,569
INFO 2026-06-08 08:34:14 MarkDuplicates Tracking 97241 as yet unmatched pairs. 244 records in RAM.
INFO 2026-06-08 08:34:16 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 2s. Last read position: chr1:201,900,408
INFO 2026-06-08 08:34:16 MarkDuplicates Tracking 99051 as yet unmatched pairs. 22 records in RAM.
INFO 2026-06-08 08:34:19 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 2s. Last read position: chr1:204,123,150
INFO 2026-06-08 08:34:19 MarkDuplicates Tracking 101428 as yet unmatched pairs. 193 records in RAM.
INFO 2026-06-08 08:34:21 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr1:207,886,992
INFO 2026-06-08 08:34:21 MarkDuplicates Tracking 103866 as yet unmatched pairs. 535 records in RAM.
INFO 2026-06-08 08:34:23 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr1:222,170,614
INFO 2026-06-08 08:34:23 MarkDuplicates Tracking 105418 as yet unmatched pairs. 0 records in RAM.
INFO 2026-06-08 08:34:24 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr1:226,146,751
INFO 2026-06-08 08:34:24 MarkDuplicates Tracking 107458 as yet unmatched pairs. 141 records in RAM.
INFO 2026-06-08 08:34:26 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 2s. Last read position: chr1:228,406,365
INFO 2026-06-08 08:34:26 MarkDuplicates Tracking 110002 as yet unmatched pairs. 232 records in RAM.
INFO 2026-06-08 08:34:28 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 1s. Last read position: chr1:235,194,200
INFO 2026-06-08 08:34:28 MarkDuplicates Tracking 112285 as yet unmatched pairs. 19 records in RAM.
INFO 2026-06-08 08:34:31 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 2s. Last read position: chr1:244,863,973
INFO 2026-06-08 08:34:31 MarkDuplicates Tracking 114703 as yet unmatched pairs. 395 records in RAM.
INFO 2026-06-08 08:34:34 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 3s. Last read position: chr2:9,400,029
INFO 2026-06-08 08:34:34 MarkDuplicates Tracking 116597 as yet unmatched pairs. 116357 records in RAM.
INFO 2026-06-08 08:34:37 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 2s. Last read position: chr2:11,618,574
INFO 2026-06-08 08:34:37 MarkDuplicates Tracking 120726 as yet unmatched pairs. 120467 records in RAM.
INFO 2026-06-08 08:34:39 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr2:20,447,787
INFO 2026-06-08 08:34:39 MarkDuplicates Tracking 121681 as yet unmatched pairs. 121421 records in RAM.
INFO 2026-06-08 08:34:41 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr2:27,082,194
INFO 2026-06-08 08:34:41 MarkDuplicates Tracking 122992 as yet unmatched pairs. 122731 records in RAM.
INFO 2026-06-08 08:34:42 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:27,664,100
INFO 2026-06-08 08:34:42 MarkDuplicates Tracking 125232 as yet unmatched pairs. 124971 records in RAM.
INFO 2026-06-08 08:34:44 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,255
INFO 2026-06-08 08:34:44 MarkDuplicates Tracking 159905 as yet unmatched pairs. 124931 records in RAM.
INFO 2026-06-08 08:34:47 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:34:47 MarkDuplicates Tracking 638268 as yet unmatched pairs. 92132 records in RAM.
INFO 2026-06-08 08:34:50 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 3s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:34:50 MarkDuplicates Tracking 1083004 as yet unmatched pairs. 62688 records in RAM.
INFO 2026-06-08 08:34:51 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:34:51 MarkDuplicates Tracking 1092291 as yet unmatched pairs. 62171 records in RAM.
INFO 2026-06-08 08:34:53 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:38,815,551
INFO 2026-06-08 08:34:53 MarkDuplicates Tracking 1155611 as yet unmatched pairs. 56723 records in RAM.
INFO 2026-06-08 08:34:54 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr2:44,329,013
INFO 2026-06-08 08:34:54 MarkDuplicates Tracking 1153302 as yet unmatched pairs. 54406 records in RAM.
INFO 2026-06-08 08:34:56 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:54,647,243
INFO 2026-06-08 08:34:56 MarkDuplicates Tracking 1151712 as yet unmatched pairs. 52813 records in RAM.
INFO 2026-06-08 08:34:58 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:61,878,933
INFO 2026-06-08 08:34:58 MarkDuplicates Tracking 1149133 as yet unmatched pairs. 50232 records in RAM.
INFO 2026-06-08 08:35:00 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:70,186,862
INFO 2026-06-08 08:35:00 MarkDuplicates Tracking 1146880 as yet unmatched pairs. 47979 records in RAM.
INFO 2026-06-08 08:35:02 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 2s. Last read position: chr2:73,902,381
INFO 2026-06-08 08:35:02 MarkDuplicates Tracking 1144744 as yet unmatched pairs. 45821 records in RAM.
INFO 2026-06-08 08:35:04 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:74,528,269
INFO 2026-06-08 08:35:04 MarkDuplicates Tracking 1142447 as yet unmatched pairs. 43523 records in RAM.
INFO 2026-06-08 08:35:06 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:86,914,417
INFO 2026-06-08 08:35:06 MarkDuplicates Tracking 1140275 as yet unmatched pairs. 41342 records in RAM.
INFO 2026-06-08 08:35:08 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:97,647,091
INFO 2026-06-08 08:35:08 MarkDuplicates Tracking 1138660 as yet unmatched pairs. 39726 records in RAM.
INFO 2026-06-08 08:35:09 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:108,751,613
INFO 2026-06-08 08:35:09 MarkDuplicates Tracking 1136649 as yet unmatched pairs. 37713 records in RAM.
INFO 2026-06-08 08:35:11 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr2:112,575,077
INFO 2026-06-08 08:35:11 MarkDuplicates Tracking 1135397 as yet unmatched pairs. 36453 records in RAM.
INFO 2026-06-08 08:35:13 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 2s. Last read position: chr2:130,072,781
INFO 2026-06-08 08:35:13 MarkDuplicates Tracking 1133537 as yet unmatched pairs. 34585 records in RAM.
INFO 2026-06-08 08:35:14 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr2:131,218,398
INFO 2026-06-08 08:35:14 MarkDuplicates Tracking 1131920 as yet unmatched pairs. 32968 records in RAM.
INFO 2026-06-08 08:35:17 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 2s. Last read position: chr2:151,828,140
INFO 2026-06-08 08:35:17 MarkDuplicates Tracking 1130446 as yet unmatched pairs. 31494 records in RAM.
INFO 2026-06-08 08:35:20 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 2s. Last read position: chr2:172,086,748
INFO 2026-06-08 08:35:20 MarkDuplicates Tracking 1128389 as yet unmatched pairs. 29425 records in RAM.
INFO 2026-06-08 08:35:22 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:181,916,070
INFO 2026-06-08 08:35:22 MarkDuplicates Tracking 1126219 as yet unmatched pairs. 27252 records in RAM.
INFO 2026-06-08 08:35:23 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr2:189,002,332
INFO 2026-06-08 08:35:23 MarkDuplicates Tracking 1126279 as yet unmatched pairs. 27312 records in RAM.
INFO 2026-06-08 08:35:25 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr2:196,845,920
INFO 2026-06-08 08:35:25 MarkDuplicates Tracking 1121457 as yet unmatched pairs. 22488 records in RAM.
INFO 2026-06-08 08:35:27 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr2:206,146,962
INFO 2026-06-08 08:35:27 MarkDuplicates Tracking 1119582 as yet unmatched pairs. 20609 records in RAM.
INFO 2026-06-08 08:35:29 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr2:215,373,341
INFO 2026-06-08 08:35:29 MarkDuplicates Tracking 1119494 as yet unmatched pairs. 20516 records in RAM.
INFO 2026-06-08 08:35:31 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:215,399,293
INFO 2026-06-08 08:35:31 MarkDuplicates Tracking 1116393 as yet unmatched pairs. 17413 records in RAM.
INFO 2026-06-08 08:35:32 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr2:215,431,926
INFO 2026-06-08 08:35:32 MarkDuplicates Tracking 1114767 as yet unmatched pairs. 15785 records in RAM.
INFO 2026-06-08 08:35:34 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr2:218,269,417
INFO 2026-06-08 08:35:34 MarkDuplicates Tracking 1111285 as yet unmatched pairs. 12294 records in RAM.
INFO 2026-06-08 08:35:38 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 3s. Last read position: chr2:219,611,964
INFO 2026-06-08 08:35:38 MarkDuplicates Tracking 1108764 as yet unmatched pairs. 9773 records in RAM.
INFO 2026-06-08 08:35:40 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 2s. Last read position: chr2:231,712,447
INFO 2026-06-08 08:35:40 MarkDuplicates Tracking 1108150 as yet unmatched pairs. 9134 records in RAM.
INFO 2026-06-08 08:35:42 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 2s. Last read position: chr2:237,352,522
INFO 2026-06-08 08:35:42 MarkDuplicates Tracking 1104974 as yet unmatched pairs. 5955 records in RAM.
INFO 2026-06-08 08:35:44 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr2:237,542,596
INFO 2026-06-08 08:35:44 MarkDuplicates Tracking 1102673 as yet unmatched pairs. 3652 records in RAM.
INFO 2026-06-08 08:35:46 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr2:241,256,197
INFO 2026-06-08 08:35:46 MarkDuplicates Tracking 1099912 as yet unmatched pairs. 890 records in RAM.
INFO 2026-06-08 08:35:48 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 2s. Last read position: chr3:9,838,052
INFO 2026-06-08 08:35:48 MarkDuplicates Tracking 1097591 as yet unmatched pairs. 44392 records in RAM.
INFO 2026-06-08 08:35:50 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr3:13,637,819
INFO 2026-06-08 08:35:50 MarkDuplicates Tracking 1095202 as yet unmatched pairs. 41996 records in RAM.
INFO 2026-06-08 08:35:52 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr3:31,579,912
INFO 2026-06-08 08:35:52 MarkDuplicates Tracking 1093363 as yet unmatched pairs. 40155 records in RAM.
INFO 2026-06-08 08:35:54 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr3:37,094,817
INFO 2026-06-08 08:35:54 MarkDuplicates Tracking 1090973 as yet unmatched pairs. 37764 records in RAM.
INFO 2026-06-08 08:35:56 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr3:42,638,602
INFO 2026-06-08 08:35:56 MarkDuplicates Tracking 1088923 as yet unmatched pairs. 35708 records in RAM.
INFO 2026-06-08 08:35:57 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr3:47,412,992
INFO 2026-06-08 08:35:57 MarkDuplicates Tracking 1086936 as yet unmatched pairs. 33713 records in RAM.
INFO 2026-06-08 08:35:59 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr3:48,580,580
INFO 2026-06-08 08:35:59 MarkDuplicates Tracking 1084552 as yet unmatched pairs. 31321 records in RAM.
INFO 2026-06-08 08:36:01 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr3:49,123,584
INFO 2026-06-08 08:36:01 MarkDuplicates Tracking 1082234 as yet unmatched pairs. 29003 records in RAM.
INFO 2026-06-08 08:36:03 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr3:50,188,007
INFO 2026-06-08 08:36:03 MarkDuplicates Tracking 1079853 as yet unmatched pairs. 26620 records in RAM.
INFO 2026-06-08 08:36:05 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr3:52,487,668
INFO 2026-06-08 08:36:05 MarkDuplicates Tracking 1077796 as yet unmatched pairs. 24559 records in RAM.
INFO 2026-06-08 08:36:07 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 2s. Last read position: chr3:57,105,979
INFO 2026-06-08 08:36:07 MarkDuplicates Tracking 1075172 as yet unmatched pairs. 21933 records in RAM.
INFO 2026-06-08 08:36:09 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 2s. Last read position: chr3:66,455,098
INFO 2026-06-08 08:36:09 MarkDuplicates Tracking 1073141 as yet unmatched pairs. 19898 records in RAM.
INFO 2026-06-08 08:36:12 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 2s. Last read position: chr3:101,574,246
INFO 2026-06-08 08:36:12 MarkDuplicates Tracking 1071232 as yet unmatched pairs. 17980 records in RAM.
INFO 2026-06-08 08:36:14 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 2s. Last read position: chr3:120,404,879
INFO 2026-06-08 08:36:14 MarkDuplicates Tracking 1069053 as yet unmatched pairs. 15797 records in RAM.
INFO 2026-06-08 08:36:16 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 2s. Last read position: chr3:127,576,864
INFO 2026-06-08 08:36:16 MarkDuplicates Tracking 1066647 as yet unmatched pairs. 13388 records in RAM.
INFO 2026-06-08 08:36:18 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr3:130,641,679
INFO 2026-06-08 08:36:18 MarkDuplicates Tracking 1064282 as yet unmatched pairs. 11019 records in RAM.
INFO 2026-06-08 08:36:20 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr3:148,865,503
INFO 2026-06-08 08:36:20 MarkDuplicates Tracking 1062085 as yet unmatched pairs. 8816 records in RAM.
INFO 2026-06-08 08:36:22 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr3:170,178,791
INFO 2026-06-08 08:36:22 MarkDuplicates Tracking 1060067 as yet unmatched pairs. 6796 records in RAM.
INFO 2026-06-08 08:36:24 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr3:184,305,857
INFO 2026-06-08 08:36:24 MarkDuplicates Tracking 1057956 as yet unmatched pairs. 4661 records in RAM.
INFO 2026-06-08 08:36:25 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr3:188,609,216
INFO 2026-06-08 08:36:25 MarkDuplicates Tracking 1056932 as yet unmatched pairs. 3634 records in RAM.
INFO 2026-06-08 08:36:27 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr3:197,065,340
INFO 2026-06-08 08:36:27 MarkDuplicates Tracking 1053780 as yet unmatched pairs. 472 records in RAM.
INFO 2026-06-08 08:36:29 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 2s. Last read position: chr4:1,739,723
INFO 2026-06-08 08:36:29 MarkDuplicates Tracking 1051510 as yet unmatched pairs. 23858 records in RAM.
INFO 2026-06-08 08:36:31 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr4:3,422,469
INFO 2026-06-08 08:36:31 MarkDuplicates Tracking 1049104 as yet unmatched pairs. 21449 records in RAM.
INFO 2026-06-08 08:36:33 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 2s. Last read position: chr4:10,099,030
INFO 2026-06-08 08:36:33 MarkDuplicates Tracking 1047077 as yet unmatched pairs. 19420 records in RAM.
INFO 2026-06-08 08:36:35 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr4:39,456,501
INFO 2026-06-08 08:36:35 MarkDuplicates Tracking 1045527 as yet unmatched pairs. 17866 records in RAM.
INFO 2026-06-08 08:36:37 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr4:56,371,476
INFO 2026-06-08 08:36:37 MarkDuplicates Tracking 1042691 as yet unmatched pairs. 15026 records in RAM.
INFO 2026-06-08 08:36:39 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr4:76,309,373
INFO 2026-06-08 08:36:39 MarkDuplicates Tracking 1040503 as yet unmatched pairs. 12827 records in RAM.
INFO 2026-06-08 08:36:41 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr4:84,774,896
INFO 2026-06-08 08:36:41 MarkDuplicates Tracking 1038439 as yet unmatched pairs. 10759 records in RAM.
INFO 2026-06-08 08:36:42 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr4:102,726,637
INFO 2026-06-08 08:36:42 MarkDuplicates Tracking 1036467 as yet unmatched pairs. 8782 records in RAM.
INFO 2026-06-08 08:36:44 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr4:121,672,601
INFO 2026-06-08 08:36:44 MarkDuplicates Tracking 1034875 as yet unmatched pairs. 7188 records in RAM.
INFO 2026-06-08 08:36:46 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr4:140,701,526
INFO 2026-06-08 08:36:46 MarkDuplicates Tracking 1032698 as yet unmatched pairs. 5007 records in RAM.
INFO 2026-06-08 08:36:48 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr4:153,276,068
INFO 2026-06-08 08:36:48 MarkDuplicates Tracking 1030727 as yet unmatched pairs. 3032 records in RAM.
INFO 2026-06-08 08:36:50 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr4:184,091,233
INFO 2026-06-08 08:36:50 MarkDuplicates Tracking 1028537 as yet unmatched pairs. 836 records in RAM.
INFO 2026-06-08 08:36:53 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 2s. Last read position: chr5:1,574,165
INFO 2026-06-08 08:36:53 MarkDuplicates Tracking 1026217 as yet unmatched pairs. 44715 records in RAM.
INFO 2026-06-08 08:36:55 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 2s. Last read position: chr5:14,291,088
INFO 2026-06-08 08:36:55 MarkDuplicates Tracking 1024728 as yet unmatched pairs. 43224 records in RAM.
INFO 2026-06-08 08:36:57 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr5:16,463,619
INFO 2026-06-08 08:36:57 MarkDuplicates Tracking 1021757 as yet unmatched pairs. 40249 records in RAM.
INFO 2026-06-08 08:36:59 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr5:36,201,106
INFO 2026-06-08 08:36:59 MarkDuplicates Tracking 1019821 as yet unmatched pairs. 38305 records in RAM.
INFO 2026-06-08 08:37:01 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr5:54,518,798
INFO 2026-06-08 08:37:01 MarkDuplicates Tracking 1017710 as yet unmatched pairs. 36170 records in RAM.
INFO 2026-06-08 08:37:03 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr5:72,197,377
INFO 2026-06-08 08:37:03 MarkDuplicates Tracking 1015896 as yet unmatched pairs. 34346 records in RAM.
INFO 2026-06-08 08:37:05 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr5:83,572,412
INFO 2026-06-08 08:37:05 MarkDuplicates Tracking 1014156 as yet unmatched pairs. 32605 records in RAM.
INFO 2026-06-08 08:37:06 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr5:116,447,075
INFO 2026-06-08 08:37:06 MarkDuplicates Tracking 1011816 as yet unmatched pairs. 30261 records in RAM.
INFO 2026-06-08 08:37:08 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 2s. Last read position: chr5:134,566,459
INFO 2026-06-08 08:37:08 MarkDuplicates Tracking 1009697 as yet unmatched pairs. 28136 records in RAM.
INFO 2026-06-08 08:37:10 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr5:138,783,279
INFO 2026-06-08 08:37:10 MarkDuplicates Tracking 1007880 as yet unmatched pairs. 26316 records in RAM.
INFO 2026-06-08 08:37:12 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr5:141,339,557
INFO 2026-06-08 08:37:12 MarkDuplicates Tracking 1005593 as yet unmatched pairs. 23954 records in RAM.
INFO 2026-06-08 08:37:14 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr5:149,624,041
INFO 2026-06-08 08:37:14 MarkDuplicates Tracking 1003551 as yet unmatched pairs. 21911 records in RAM.
INFO 2026-06-08 08:37:16 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr5:150,404,697
INFO 2026-06-08 08:37:16 MarkDuplicates Tracking 1003683 as yet unmatched pairs. 22041 records in RAM.
INFO 2026-06-08 08:37:18 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 2s. Last read position: chr5:151,663,515
INFO 2026-06-08 08:37:18 MarkDuplicates Tracking 999768 as yet unmatched pairs. 18123 records in RAM.
INFO 2026-06-08 08:37:20 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr5:168,712,282
INFO 2026-06-08 08:37:20 MarkDuplicates Tracking 997020 as yet unmatched pairs. 15366 records in RAM.
INFO 2026-06-08 08:37:22 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr5:173,318,010
INFO 2026-06-08 08:37:22 MarkDuplicates Tracking 996444 as yet unmatched pairs. 14790 records in RAM.
INFO 2026-06-08 08:37:23 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr5:177,337,167
INFO 2026-06-08 08:37:23 MarkDuplicates Tracking 993311 as yet unmatched pairs. 11653 records in RAM.
INFO 2026-06-08 08:37:26 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 2s. Last read position: chr5:178,153,501
INFO 2026-06-08 08:37:26 MarkDuplicates Tracking 991544 as yet unmatched pairs. 9884 records in RAM.
INFO 2026-06-08 08:37:29 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 3s. Last read position: chr5:179,723,661
INFO 2026-06-08 08:37:29 MarkDuplicates Tracking 990443 as yet unmatched pairs. 8780 records in RAM.
INFO 2026-06-08 08:37:31 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr5:179,824,065
INFO 2026-06-08 08:37:31 MarkDuplicates Tracking 987507 as yet unmatched pairs. 5844 records in RAM.
INFO 2026-06-08 08:37:33 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr5:180,792,056
INFO 2026-06-08 08:37:33 MarkDuplicates Tracking 984411 as yet unmatched pairs. 2741 records in RAM.
INFO 2026-06-08 08:37:35 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr5:181,242,289
INFO 2026-06-08 08:37:35 MarkDuplicates Tracking 983600 as yet unmatched pairs. 1925 records in RAM.
INFO 2026-06-08 08:37:37 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 2s. Last read position: chr6:7,211,621
INFO 2026-06-08 08:37:37 MarkDuplicates Tracking 980381 as yet unmatched pairs. 71053 records in RAM.
INFO 2026-06-08 08:37:39 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr6:7,888,824
INFO 2026-06-08 08:37:39 MarkDuplicates Tracking 978026 as yet unmatched pairs. 68697 records in RAM.
INFO 2026-06-08 08:37:41 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr6:17,771,146
INFO 2026-06-08 08:37:41 MarkDuplicates Tracking 975598 as yet unmatched pairs. 66266 records in RAM.
INFO 2026-06-08 08:37:43 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr6:26,197,045
INFO 2026-06-08 08:37:43 MarkDuplicates Tracking 973921 as yet unmatched pairs. 64581 records in RAM.
INFO 2026-06-08 08:37:45 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr6:28,923,589
INFO 2026-06-08 08:37:45 MarkDuplicates Tracking 971729 as yet unmatched pairs. 62388 records in RAM.
INFO 2026-06-08 08:37:47 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 2s. Last read position: chr6:30,707,685
INFO 2026-06-08 08:37:47 MarkDuplicates Tracking 969526 as yet unmatched pairs. 60182 records in RAM.
INFO 2026-06-08 08:37:50 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 3s. Last read position: chr6:31,530,424
INFO 2026-06-08 08:37:50 MarkDuplicates Tracking 968189 as yet unmatched pairs. 58840 records in RAM.
INFO 2026-06-08 08:37:52 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr6:31,640,286
INFO 2026-06-08 08:37:52 MarkDuplicates Tracking 965815 as yet unmatched pairs. 56464 records in RAM.
INFO 2026-06-08 08:37:54 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr6:31,817,089
INFO 2026-06-08 08:37:54 MarkDuplicates Tracking 963597 as yet unmatched pairs. 54245 records in RAM.
INFO 2026-06-08 08:37:56 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr6:31,982,341
INFO 2026-06-08 08:37:56 MarkDuplicates Tracking 962120 as yet unmatched pairs. 52763 records in RAM.
INFO 2026-06-08 08:37:57 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr6:31,995,411
INFO 2026-06-08 08:37:57 MarkDuplicates Tracking 963762 as yet unmatched pairs. 54405 records in RAM.
INFO 2026-06-08 08:37:59 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr6:32,015,091
INFO 2026-06-08 08:37:59 MarkDuplicates Tracking 966423 as yet unmatched pairs. 57066 records in RAM.
INFO 2026-06-08 08:38:00 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr6:32,028,973
INFO 2026-06-08 08:38:00 MarkDuplicates Tracking 961416 as yet unmatched pairs. 52057 records in RAM.
INFO 2026-06-08 08:38:02 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr6:32,049,445
INFO 2026-06-08 08:38:02 MarkDuplicates Tracking 957304 as yet unmatched pairs. 47944 records in RAM.
INFO 2026-06-08 08:38:04 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr6:32,096,616
INFO 2026-06-08 08:38:04 MarkDuplicates Tracking 954268 as yet unmatched pairs. 44907 records in RAM.
INFO 2026-06-08 08:38:06 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr6:32,979,828
INFO 2026-06-08 08:38:06 MarkDuplicates Tracking 952259 as yet unmatched pairs. 42897 records in RAM.
INFO 2026-06-08 08:38:07 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr6:33,301,735
INFO 2026-06-08 08:38:07 MarkDuplicates Tracking 950469 as yet unmatched pairs. 41104 records in RAM.
INFO 2026-06-08 08:38:09 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr6:34,035,675
INFO 2026-06-08 08:38:09 MarkDuplicates Tracking 947378 as yet unmatched pairs. 38013 records in RAM.
INFO 2026-06-08 08:38:12 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 2s. Last read position: chr6:35,637,039
INFO 2026-06-08 08:38:12 MarkDuplicates Tracking 945549 as yet unmatched pairs. 36181 records in RAM.
INFO 2026-06-08 08:38:14 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 2s. Last read position: chr6:41,585,494
INFO 2026-06-08 08:38:14 MarkDuplicates Tracking 943343 as yet unmatched pairs. 33972 records in RAM.
INFO 2026-06-08 08:38:16 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 2s. Last read position: chr6:43,018,545
INFO 2026-06-08 08:38:16 MarkDuplicates Tracking 940915 as yet unmatched pairs. 31541 records in RAM.
INFO 2026-06-08 08:38:18 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr6:43,512,168
INFO 2026-06-08 08:38:18 MarkDuplicates Tracking 939142 as yet unmatched pairs. 29767 records in RAM.
INFO 2026-06-08 08:38:20 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr6:44,255,202
INFO 2026-06-08 08:38:20 MarkDuplicates Tracking 936576 as yet unmatched pairs. 27194 records in RAM.
INFO 2026-06-08 08:38:22 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr6:53,288,098
INFO 2026-06-08 08:38:22 MarkDuplicates Tracking 934433 as yet unmatched pairs. 25034 records in RAM.
INFO 2026-06-08 08:38:23 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr6:75,640,681
INFO 2026-06-08 08:38:23 MarkDuplicates Tracking 932363 as yet unmatched pairs. 22961 records in RAM.
INFO 2026-06-08 08:38:25 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr6:106,086,467
INFO 2026-06-08 08:38:25 MarkDuplicates Tracking 930376 as yet unmatched pairs. 20970 records in RAM.
INFO 2026-06-08 08:38:27 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr6:119,180,315
INFO 2026-06-08 08:38:27 MarkDuplicates Tracking 928766 as yet unmatched pairs. 19352 records in RAM.
INFO 2026-06-08 08:38:29 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr6:131,950,753
INFO 2026-06-08 08:38:29 MarkDuplicates Tracking 926354 as yet unmatched pairs. 16939 records in RAM.
INFO 2026-06-08 08:38:30 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr6:136,372,562
INFO 2026-06-08 08:38:30 MarkDuplicates Tracking 924417 as yet unmatched pairs. 14995 records in RAM.
INFO 2026-06-08 08:38:32 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr6:143,843,440
INFO 2026-06-08 08:38:32 MarkDuplicates Tracking 921845 as yet unmatched pairs. 12422 records in RAM.
INFO 2026-06-08 08:38:34 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr6:151,366,643
INFO 2026-06-08 08:38:34 MarkDuplicates Tracking 919859 as yet unmatched pairs. 10424 records in RAM.
INFO 2026-06-08 08:38:36 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr6:151,944,413
INFO 2026-06-08 08:38:36 MarkDuplicates Tracking 919885 as yet unmatched pairs. 10450 records in RAM.
INFO 2026-06-08 08:38:37 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr6:158,095,840
INFO 2026-06-08 08:38:37 MarkDuplicates Tracking 915162 as yet unmatched pairs. 5724 records in RAM.
INFO 2026-06-08 08:38:39 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr6:159,785,464
INFO 2026-06-08 08:38:39 MarkDuplicates Tracking 912977 as yet unmatched pairs. 3538 records in RAM.
INFO 2026-06-08 08:38:41 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr6:168,598,946
INFO 2026-06-08 08:38:41 MarkDuplicates Tracking 911119 as yet unmatched pairs. 1678 records in RAM.
INFO 2026-06-08 08:38:44 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 2s. Last read position: chr7:1,445,097
INFO 2026-06-08 08:38:44 MarkDuplicates Tracking 908552 as yet unmatched pairs. 63408 records in RAM.
INFO 2026-06-08 08:38:46 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 2s. Last read position: chr7:4,682,369
INFO 2026-06-08 08:38:46 MarkDuplicates Tracking 905804 as yet unmatched pairs. 60658 records in RAM.
INFO 2026-06-08 08:38:48 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr7:5,388,317
INFO 2026-06-08 08:38:48 MarkDuplicates Tracking 904064 as yet unmatched pairs. 58917 records in RAM.
INFO 2026-06-08 08:38:50 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr7:5,623,039
INFO 2026-06-08 08:38:50 MarkDuplicates Tracking 900951 as yet unmatched pairs. 55802 records in RAM.
INFO 2026-06-08 08:38:51 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr7:17,299,169
INFO 2026-06-08 08:38:51 MarkDuplicates Tracking 898876 as yet unmatched pairs. 53726 records in RAM.
INFO 2026-06-08 08:38:53 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr7:28,956,863
INFO 2026-06-08 08:38:53 MarkDuplicates Tracking 896866 as yet unmatched pairs. 51715 records in RAM.
INFO 2026-06-08 08:38:55 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr7:41,966,115
INFO 2026-06-08 08:38:55 MarkDuplicates Tracking 894625 as yet unmatched pairs. 49470 records in RAM.
INFO 2026-06-08 08:38:56 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr7:44,539,514
INFO 2026-06-08 08:38:56 MarkDuplicates Tracking 892655 as yet unmatched pairs. 47498 records in RAM.
INFO 2026-06-08 08:38:58 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr7:47,369,046
INFO 2026-06-08 08:38:58 MarkDuplicates Tracking 890558 as yet unmatched pairs. 45397 records in RAM.
INFO 2026-06-08 08:39:00 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr7:66,921,400
INFO 2026-06-08 08:39:00 MarkDuplicates Tracking 888492 as yet unmatched pairs. 43329 records in RAM.
INFO 2026-06-08 08:39:01 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr7:73,112,101
INFO 2026-06-08 08:39:01 MarkDuplicates Tracking 887143 as yet unmatched pairs. 41979 records in RAM.
INFO 2026-06-08 08:39:03 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr7:74,045,237
INFO 2026-06-08 08:39:03 MarkDuplicates Tracking 886254 as yet unmatched pairs. 41087 records in RAM.
INFO 2026-06-08 08:39:04 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr7:75,282,358
INFO 2026-06-08 08:39:04 MarkDuplicates Tracking 883656 as yet unmatched pairs. 38487 records in RAM.
INFO 2026-06-08 08:39:06 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 2s. Last read position: chr7:76,066,310
INFO 2026-06-08 08:39:06 MarkDuplicates Tracking 882098 as yet unmatched pairs. 36929 records in RAM.
INFO 2026-06-08 08:39:09 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 2s. Last read position: chr7:76,995,484
INFO 2026-06-08 08:39:09 MarkDuplicates Tracking 880221 as yet unmatched pairs. 35051 records in RAM.
INFO 2026-06-08 08:39:11 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr7:92,083,585
INFO 2026-06-08 08:39:11 MarkDuplicates Tracking 878624 as yet unmatched pairs. 33445 records in RAM.
INFO 2026-06-08 08:39:13 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 2s. Last read position: chr7:94,413,689
INFO 2026-06-08 08:39:13 MarkDuplicates Tracking 877587 as yet unmatched pairs. 32407 records in RAM.
INFO 2026-06-08 08:39:16 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 2s. Last read position: chr7:98,238,515
INFO 2026-06-08 08:39:16 MarkDuplicates Tracking 873971 as yet unmatched pairs. 28788 records in RAM.
INFO 2026-06-08 08:39:17 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr7:99,563,903
INFO 2026-06-08 08:39:17 MarkDuplicates Tracking 872073 as yet unmatched pairs. 26886 records in RAM.
INFO 2026-06-08 08:39:19 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr7:100,033,952
INFO 2026-06-08 08:39:19 MarkDuplicates Tracking 869844 as yet unmatched pairs. 24657 records in RAM.
INFO 2026-06-08 08:39:21 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr7:100,374,064
INFO 2026-06-08 08:39:21 MarkDuplicates Tracking 867634 as yet unmatched pairs. 22445 records in RAM.
INFO 2026-06-08 08:39:22 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr7:100,684,124
INFO 2026-06-08 08:39:22 MarkDuplicates Tracking 865530 as yet unmatched pairs. 20341 records in RAM.
INFO 2026-06-08 08:39:24 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr7:101,160,588
INFO 2026-06-08 08:39:24 MarkDuplicates Tracking 863034 as yet unmatched pairs. 17845 records in RAM.
INFO 2026-06-08 08:39:25 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr7:102,652,392
INFO 2026-06-08 08:39:25 MarkDuplicates Tracking 861941 as yet unmatched pairs. 16747 records in RAM.
INFO 2026-06-08 08:39:27 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr7:116,559,173
INFO 2026-06-08 08:39:27 MarkDuplicates Tracking 859826 as yet unmatched pairs. 14629 records in RAM.
INFO 2026-06-08 08:39:29 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr7:128,850,473
INFO 2026-06-08 08:39:29 MarkDuplicates Tracking 857477 as yet unmatched pairs. 12279 records in RAM.
INFO 2026-06-08 08:39:30 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr7:138,460,861
INFO 2026-06-08 08:39:30 MarkDuplicates Tracking 855728 as yet unmatched pairs. 10527 records in RAM.
INFO 2026-06-08 08:39:32 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 1s. Last read position: chr7:139,600,426
INFO 2026-06-08 08:39:32 MarkDuplicates Tracking 853441 as yet unmatched pairs. 8232 records in RAM.
INFO 2026-06-08 08:39:33 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr7:143,703,255
INFO 2026-06-08 08:39:33 MarkDuplicates Tracking 851400 as yet unmatched pairs. 6190 records in RAM.
INFO 2026-06-08 08:39:35 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr7:149,195,676
INFO 2026-06-08 08:39:35 MarkDuplicates Tracking 850052 as yet unmatched pairs. 4842 records in RAM.
INFO 2026-06-08 08:39:36 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr7:151,118,619
INFO 2026-06-08 08:39:36 MarkDuplicates Tracking 847426 as yet unmatched pairs. 2213 records in RAM.
INFO 2026-06-08 08:39:38 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr7:158,902,385
INFO 2026-06-08 08:39:38 MarkDuplicates Tracking 845356 as yet unmatched pairs. 132 records in RAM.
INFO 2026-06-08 08:39:40 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 2s. Last read position: chr8:22,165,397
INFO 2026-06-08 08:39:40 MarkDuplicates Tracking 843232 as yet unmatched pairs. 68483 records in RAM.
INFO 2026-06-08 08:39:42 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr8:28,737,518
INFO 2026-06-08 08:39:42 MarkDuplicates Tracking 841035 as yet unmatched pairs. 66286 records in RAM.
INFO 2026-06-08 08:39:44 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr8:37,698,135
INFO 2026-06-08 08:39:44 MarkDuplicates Tracking 839030 as yet unmatched pairs. 64263 records in RAM.
INFO 2026-06-08 08:39:47 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 3s. Last read position: chr8:38,424,597
INFO 2026-06-08 08:39:47 MarkDuplicates Tracking 836528 as yet unmatched pairs. 61759 records in RAM.
INFO 2026-06-08 08:39:48 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr8:47,440,416
INFO 2026-06-08 08:39:48 MarkDuplicates Tracking 834589 as yet unmatched pairs. 59819 records in RAM.
INFO 2026-06-08 08:39:50 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 1s. Last read position: chr8:56,074,380
INFO 2026-06-08 08:39:50 MarkDuplicates Tracking 831999 as yet unmatched pairs. 57223 records in RAM.
INFO 2026-06-08 08:39:52 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 1s. Last read position: chr8:70,124,773
INFO 2026-06-08 08:39:52 MarkDuplicates Tracking 830218 as yet unmatched pairs. 55432 records in RAM.
INFO 2026-06-08 08:39:53 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 1s. Last read position: chr8:80,486,734
INFO 2026-06-08 08:39:53 MarkDuplicates Tracking 827912 as yet unmatched pairs. 53125 records in RAM.
INFO 2026-06-08 08:39:55 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 1s. Last read position: chr8:94,696,932
INFO 2026-06-08 08:39:55 MarkDuplicates Tracking 826026 as yet unmatched pairs. 51234 records in RAM.
INFO 2026-06-08 08:39:57 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 1s. Last read position: chr8:99,776,780
INFO 2026-06-08 08:39:57 MarkDuplicates Tracking 823950 as yet unmatched pairs. 49153 records in RAM.
INFO 2026-06-08 08:39:59 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 1s. Last read position: chr8:100,712,697
INFO 2026-06-08 08:39:59 MarkDuplicates Tracking 825607 as yet unmatched pairs. 50809 records in RAM.
INFO 2026-06-08 08:40:01 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 2s. Last read position: chr8:101,570,370
INFO 2026-06-08 08:40:01 MarkDuplicates Tracking 819359 as yet unmatched pairs. 44561 records in RAM.
INFO 2026-06-08 08:40:03 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 2s. Last read position: chr8:108,201,814
INFO 2026-06-08 08:40:03 MarkDuplicates Tracking 817562 as yet unmatched pairs. 42753 records in RAM.
INFO 2026-06-08 08:40:05 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 1s. Last read position: chr8:115,619,246
INFO 2026-06-08 08:40:05 MarkDuplicates Tracking 815622 as yet unmatched pairs. 40808 records in RAM.
INFO 2026-06-08 08:40:07 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 1s. Last read position: chr8:122,953,906
INFO 2026-06-08 08:40:07 MarkDuplicates Tracking 812948 as yet unmatched pairs. 38128 records in RAM.
INFO 2026-06-08 08:40:08 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 1s. Last read position: chr8:127,738,762
INFO 2026-06-08 08:40:08 MarkDuplicates Tracking 811909 as yet unmatched pairs. 37085 records in RAM.
INFO 2026-06-08 08:40:10 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:07:35s. Time for last 1,000,000: 1s. Last read position: chr8:140,557,153
INFO 2026-06-08 08:40:10 MarkDuplicates Tracking 808535 as yet unmatched pairs. 33709 records in RAM.
INFO 2026-06-08 08:40:12 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:07:37s. Time for last 1,000,000: 1s. Last read position: chr8:143,562,449
INFO 2026-06-08 08:40:12 MarkDuplicates Tracking 806141 as yet unmatched pairs. 31304 records in RAM.
INFO 2026-06-08 08:40:13 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 1s. Last read position: chr8:143,726,389
INFO 2026-06-08 08:40:13 MarkDuplicates Tracking 804275 as yet unmatched pairs. 29434 records in RAM.
INFO 2026-06-08 08:40:15 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:40s. Time for last 1,000,000: 1s. Last read position: chr8:143,837,156
INFO 2026-06-08 08:40:15 MarkDuplicates Tracking 801117 as yet unmatched pairs. 26275 records in RAM.
INFO 2026-06-08 08:40:16 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:41s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,516
INFO 2026-06-08 08:40:16 MarkDuplicates Tracking 800467 as yet unmatched pairs. 25625 records in RAM.
INFO 2026-06-08 08:40:17 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:43s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,240
INFO 2026-06-08 08:40:17 MarkDuplicates Tracking 801600 as yet unmatched pairs. 26758 records in RAM.
INFO 2026-06-08 08:40:19 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,231
INFO 2026-06-08 08:40:19 MarkDuplicates Tracking 802211 as yet unmatched pairs. 27368 records in RAM.
INFO 2026-06-08 08:40:20 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:45s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,047
INFO 2026-06-08 08:40:20 MarkDuplicates Tracking 798367 as yet unmatched pairs. 23524 records in RAM.
INFO 2026-06-08 08:40:21 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,632
INFO 2026-06-08 08:40:21 MarkDuplicates Tracking 797757 as yet unmatched pairs. 22914 records in RAM.
INFO 2026-06-08 08:40:22 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:47s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,334
INFO 2026-06-08 08:40:22 MarkDuplicates Tracking 798060 as yet unmatched pairs. 23217 records in RAM.
INFO 2026-06-08 08:40:23 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,106
INFO 2026-06-08 08:40:23 MarkDuplicates Tracking 801497 as yet unmatched pairs. 26654 records in RAM.
INFO 2026-06-08 08:40:25 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:50s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,806
INFO 2026-06-08 08:40:25 MarkDuplicates Tracking 793793 as yet unmatched pairs. 18950 records in RAM.
INFO 2026-06-08 08:40:26 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,719
INFO 2026-06-08 08:40:26 MarkDuplicates Tracking 797522 as yet unmatched pairs. 22679 records in RAM.
INFO 2026-06-08 08:40:27 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:52s. Time for last 1,000,000: 1s. Last read position: chr8:143,865,484
INFO 2026-06-08 08:40:27 MarkDuplicates Tracking 792817 as yet unmatched pairs. 17974 records in RAM.
INFO 2026-06-08 08:40:28 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 1s. Last read position: chr8:143,866,293
INFO 2026-06-08 08:40:28 MarkDuplicates Tracking 792844 as yet unmatched pairs. 18001 records in RAM.
INFO 2026-06-08 08:40:30 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:55s. Time for last 1,000,000: 1s. Last read position: chr8:143,869,793
INFO 2026-06-08 08:40:30 MarkDuplicates Tracking 792867 as yet unmatched pairs. 18024 records in RAM.
INFO 2026-06-08 08:40:32 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 2s. Last read position: chr8:143,918,726
INFO 2026-06-08 08:40:32 MarkDuplicates Tracking 789583 as yet unmatched pairs. 14740 records in RAM.
INFO 2026-06-08 08:40:33 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:07:59s. Time for last 1,000,000: 1s. Last read position: chr8:143,926,865
INFO 2026-06-08 08:40:33 MarkDuplicates Tracking 786834 as yet unmatched pairs. 11988 records in RAM.
INFO 2026-06-08 08:40:36 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 2s. Last read position: chr8:144,080,301
INFO 2026-06-08 08:40:36 MarkDuplicates Tracking 784034 as yet unmatched pairs. 9185 records in RAM.
INFO 2026-06-08 08:40:39 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:04s. Time for last 1,000,000: 2s. Last read position: chr8:144,312,139
INFO 2026-06-08 08:40:39 MarkDuplicates Tracking 781304 as yet unmatched pairs. 6454 records in RAM.
INFO 2026-06-08 08:40:40 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:06s. Time for last 1,000,000: 1s. Last read position: chr8:144,464,465
INFO 2026-06-08 08:40:40 MarkDuplicates Tracking 778802 as yet unmatched pairs. 3951 records in RAM.
INFO 2026-06-08 08:40:42 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 1s. Last read position: chr8:144,789,898
INFO 2026-06-08 08:40:42 MarkDuplicates Tracking 776399 as yet unmatched pairs. 1547 records in RAM.
INFO 2026-06-08 08:40:44 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 2s. Last read position: chr9:3,257,069
INFO 2026-06-08 08:40:44 MarkDuplicates Tracking 773942 as yet unmatched pairs. 43448 records in RAM.
INFO 2026-06-08 08:40:46 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 1s. Last read position: chr9:15,527,611
INFO 2026-06-08 08:40:46 MarkDuplicates Tracking 771761 as yet unmatched pairs. 41250 records in RAM.
INFO 2026-06-08 08:40:48 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:13s. Time for last 1,000,000: 1s. Last read position: chr9:33,264,227
INFO 2026-06-08 08:40:48 MarkDuplicates Tracking 770290 as yet unmatched pairs. 39775 records in RAM.
INFO 2026-06-08 08:40:49 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 1s. Last read position: chr9:35,060,349
INFO 2026-06-08 08:40:49 MarkDuplicates Tracking 767869 as yet unmatched pairs. 37353 records in RAM.
INFO 2026-06-08 08:40:51 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 1s. Last read position: chr9:35,720,154
INFO 2026-06-08 08:40:51 MarkDuplicates Tracking 765178 as yet unmatched pairs. 34661 records in RAM.
INFO 2026-06-08 08:40:53 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 1s. Last read position: chr9:38,068,167
INFO 2026-06-08 08:40:53 MarkDuplicates Tracking 762916 as yet unmatched pairs. 32380 records in RAM.
INFO 2026-06-08 08:40:55 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 1s. Last read position: chr9:83,669,220
INFO 2026-06-08 08:40:55 MarkDuplicates Tracking 761362 as yet unmatched pairs. 30823 records in RAM.
INFO 2026-06-08 08:41:55 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 60s. Last read position: chr9:92,258,715
INFO 2026-06-08 08:41:55 MarkDuplicates Tracking 759389 as yet unmatched pairs. 28850 records in RAM.
INFO 2026-06-08 08:41:57 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 2s. Last read position: chr9:97,983,539
INFO 2026-06-08 08:41:57 MarkDuplicates Tracking 757133 as yet unmatched pairs. 26592 records in RAM.
INFO 2026-06-08 08:41:59 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr9:110,128,437
INFO 2026-06-08 08:41:59 MarkDuplicates Tracking 754996 as yet unmatched pairs. 24454 records in RAM.
INFO 2026-06-08 08:42:01 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr9:114,359,661
INFO 2026-06-08 08:42:01 MarkDuplicates Tracking 752534 as yet unmatched pairs. 21985 records in RAM.
INFO 2026-06-08 08:42:03 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 2s. Last read position: chr9:121,317,150
INFO 2026-06-08 08:42:03 MarkDuplicates Tracking 750594 as yet unmatched pairs. 20042 records in RAM.
INFO 2026-06-08 08:42:05 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr9:125,237,021
INFO 2026-06-08 08:42:05 MarkDuplicates Tracking 749061 as yet unmatched pairs. 18509 records in RAM.
INFO 2026-06-08 08:42:07 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr9:127,714,675
INFO 2026-06-08 08:42:07 MarkDuplicates Tracking 745991 as yet unmatched pairs. 15437 records in RAM.
INFO 2026-06-08 08:42:09 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr9:128,250,295
INFO 2026-06-08 08:42:09 MarkDuplicates Tracking 743594 as yet unmatched pairs. 13039 records in RAM.
INFO 2026-06-08 08:42:10 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr9:128,627,432
INFO 2026-06-08 08:42:10 MarkDuplicates Tracking 741917 as yet unmatched pairs. 11362 records in RAM.
INFO 2026-06-08 08:42:12 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr9:130,880,590
INFO 2026-06-08 08:42:12 MarkDuplicates Tracking 739828 as yet unmatched pairs. 9271 records in RAM.
INFO 2026-06-08 08:42:14 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr9:132,509,396
INFO 2026-06-08 08:42:14 MarkDuplicates Tracking 736984 as yet unmatched pairs. 6427 records in RAM.
INFO 2026-06-08 08:42:16 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr9:134,824,599
INFO 2026-06-08 08:42:16 MarkDuplicates Tracking 735022 as yet unmatched pairs. 4464 records in RAM.
INFO 2026-06-08 08:42:17 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr9:136,943,293
INFO 2026-06-08 08:42:17 MarkDuplicates Tracking 732586 as yet unmatched pairs. 2027 records in RAM.
INFO 2026-06-08 08:42:20 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 2s. Last read position: chr10:3,138,318
INFO 2026-06-08 08:42:20 MarkDuplicates Tracking 730186 as yet unmatched pairs. 40496 records in RAM.
INFO 2026-06-08 08:42:21 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr10:8,068,910
INFO 2026-06-08 08:42:21 MarkDuplicates Tracking 728432 as yet unmatched pairs. 38731 records in RAM.
INFO 2026-06-08 08:42:23 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 2s. Last read position: chr10:24,380,922
INFO 2026-06-08 08:42:23 MarkDuplicates Tracking 726098 as yet unmatched pairs. 36388 records in RAM.
INFO 2026-06-08 08:42:25 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr10:32,039,415
INFO 2026-06-08 08:42:25 MarkDuplicates Tracking 724405 as yet unmatched pairs. 34689 records in RAM.
INFO 2026-06-08 08:42:27 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr10:44,377,711
INFO 2026-06-08 08:42:27 MarkDuplicates Tracking 722535 as yet unmatched pairs. 32818 records in RAM.
INFO 2026-06-08 08:42:28 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr10:47,502,965
INFO 2026-06-08 08:42:28 MarkDuplicates Tracking 720929 as yet unmatched pairs. 31212 records in RAM.
INFO 2026-06-08 08:42:30 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 2s. Last read position: chr10:59,906,359
INFO 2026-06-08 08:42:30 MarkDuplicates Tracking 719072 as yet unmatched pairs. 29351 records in RAM.
INFO 2026-06-08 08:42:32 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr10:70,145,390
INFO 2026-06-08 08:42:32 MarkDuplicates Tracking 717155 as yet unmatched pairs. 27433 records in RAM.
INFO 2026-06-08 08:42:33 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr10:73,675,413
INFO 2026-06-08 08:42:33 MarkDuplicates Tracking 714789 as yet unmatched pairs. 25062 records in RAM.
INFO 2026-06-08 08:42:35 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr10:77,817,050
INFO 2026-06-08 08:42:35 MarkDuplicates Tracking 712699 as yet unmatched pairs. 22971 records in RAM.
INFO 2026-06-08 08:42:37 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr10:79,848,691
INFO 2026-06-08 08:42:37 MarkDuplicates Tracking 710587 as yet unmatched pairs. 20859 records in RAM.
INFO 2026-06-08 08:42:38 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr10:87,366,203
INFO 2026-06-08 08:42:38 MarkDuplicates Tracking 709024 as yet unmatched pairs. 19296 records in RAM.
INFO 2026-06-08 08:42:40 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr10:93,426,125
INFO 2026-06-08 08:42:40 MarkDuplicates Tracking 707378 as yet unmatched pairs. 17649 records in RAM.
INFO 2026-06-08 08:42:41 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr10:97,480,978
INFO 2026-06-08 08:42:41 MarkDuplicates Tracking 704790 as yet unmatched pairs. 15060 records in RAM.
INFO 2026-06-08 08:42:43 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr10:101,005,455
INFO 2026-06-08 08:42:43 MarkDuplicates Tracking 702566 as yet unmatched pairs. 12831 records in RAM.
INFO 2026-06-08 08:42:45 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr10:102,396,309
INFO 2026-06-08 08:42:45 MarkDuplicates Tracking 700452 as yet unmatched pairs. 10717 records in RAM.
INFO 2026-06-08 08:42:46 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr10:110,226,268
INFO 2026-06-08 08:42:46 MarkDuplicates Tracking 698258 as yet unmatched pairs. 8521 records in RAM.
INFO 2026-06-08 08:42:48 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr10:116,921,514
INFO 2026-06-08 08:42:48 MarkDuplicates Tracking 696329 as yet unmatched pairs. 6589 records in RAM.
INFO 2026-06-08 08:42:50 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr10:121,593,711
INFO 2026-06-08 08:42:50 MarkDuplicates Tracking 694236 as yet unmatched pairs. 4494 records in RAM.
INFO 2026-06-08 08:42:51 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr10:127,061,700
INFO 2026-06-08 08:42:51 MarkDuplicates Tracking 691904 as yet unmatched pairs. 2162 records in RAM.
INFO 2026-06-08 08:42:53 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 2s. Last read position: chr11:314,940
INFO 2026-06-08 08:42:53 MarkDuplicates Tracking 689656 as yet unmatched pairs. 85440 records in RAM.
INFO 2026-06-08 08:42:55 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr11:822,532
INFO 2026-06-08 08:42:55 MarkDuplicates Tracking 687450 as yet unmatched pairs. 83234 records in RAM.
INFO 2026-06-08 08:42:57 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 2s. Last read position: chr11:1,026,030
INFO 2026-06-08 08:42:57 MarkDuplicates Tracking 684958 as yet unmatched pairs. 80742 records in RAM.
INFO 2026-06-08 08:42:59 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr11:2,585,283
INFO 2026-06-08 08:42:59 MarkDuplicates Tracking 682721 as yet unmatched pairs. 78504 records in RAM.
INFO 2026-06-08 08:43:01 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr11:7,987,501
INFO 2026-06-08 08:43:01 MarkDuplicates Tracking 680592 as yet unmatched pairs. 76372 records in RAM.
INFO 2026-06-08 08:43:03 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr11:10,800,259
INFO 2026-06-08 08:43:03 MarkDuplicates Tracking 678847 as yet unmatched pairs. 74625 records in RAM.
INFO 2026-06-08 08:43:05 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr11:16,738,712
INFO 2026-06-08 08:43:05 MarkDuplicates Tracking 677802 as yet unmatched pairs. 73580 records in RAM.
INFO 2026-06-08 08:43:06 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr11:17,330,949
INFO 2026-06-08 08:43:06 MarkDuplicates Tracking 674455 as yet unmatched pairs. 70229 records in RAM.
INFO 2026-06-08 08:43:08 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr11:20,364,255
INFO 2026-06-08 08:43:08 MarkDuplicates Tracking 671775 as yet unmatched pairs. 67544 records in RAM.
INFO 2026-06-08 08:43:10 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr11:45,212,551
INFO 2026-06-08 08:43:10 MarkDuplicates Tracking 669870 as yet unmatched pairs. 65636 records in RAM.
INFO 2026-06-08 08:43:11 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr11:47,415,125
INFO 2026-06-08 08:43:11 MarkDuplicates Tracking 667801 as yet unmatched pairs. 63564 records in RAM.
INFO 2026-06-08 08:43:13 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr11:57,326,355
INFO 2026-06-08 08:43:13 MarkDuplicates Tracking 665570 as yet unmatched pairs. 61333 records in RAM.
INFO 2026-06-08 08:43:15 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr11:59,655,907
INFO 2026-06-08 08:43:15 MarkDuplicates Tracking 663549 as yet unmatched pairs. 59312 records in RAM.
INFO 2026-06-08 08:43:16 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr11:61,416,337
INFO 2026-06-08 08:43:16 MarkDuplicates Tracking 661412 as yet unmatched pairs. 57168 records in RAM.
INFO 2026-06-08 08:43:18 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr11:62,518,755
INFO 2026-06-08 08:43:18 MarkDuplicates Tracking 659918 as yet unmatched pairs. 55674 records in RAM.
INFO 2026-06-08 08:43:20 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr11:62,527,069
INFO 2026-06-08 08:43:20 MarkDuplicates Tracking 658109 as yet unmatched pairs. 53864 records in RAM.
INFO 2026-06-08 08:43:21 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr11:62,533,974
INFO 2026-06-08 08:43:21 MarkDuplicates Tracking 657033 as yet unmatched pairs. 52788 records in RAM.
INFO 2026-06-08 08:43:23 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr11:62,690,327
INFO 2026-06-08 08:43:23 MarkDuplicates Tracking 653723 as yet unmatched pairs. 49477 records in RAM.
INFO 2026-06-08 08:43:25 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr11:63,904,136
INFO 2026-06-08 08:43:25 MarkDuplicates Tracking 651238 as yet unmatched pairs. 46991 records in RAM.
INFO 2026-06-08 08:43:26 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr11:64,765,358
INFO 2026-06-08 08:43:26 MarkDuplicates Tracking 649305 as yet unmatched pairs. 45057 records in RAM.
INFO 2026-06-08 08:43:28 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr11:65,120,773
INFO 2026-06-08 08:43:28 MarkDuplicates Tracking 647801 as yet unmatched pairs. 43552 records in RAM.
INFO 2026-06-08 08:43:30 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr11:65,582,445
INFO 2026-06-08 08:43:30 MarkDuplicates Tracking 643845 as yet unmatched pairs. 39594 records in RAM.
INFO 2026-06-08 08:43:32 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr11:65,891,226
INFO 2026-06-08 08:43:32 MarkDuplicates Tracking 641731 as yet unmatched pairs. 37478 records in RAM.
INFO 2026-06-08 08:43:35 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 2s. Last read position: chr11:66,563,838
INFO 2026-06-08 08:43:35 MarkDuplicates Tracking 639614 as yet unmatched pairs. 35361 records in RAM.
INFO 2026-06-08 08:43:37 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr11:67,291,691
INFO 2026-06-08 08:43:37 MarkDuplicates Tracking 636608 as yet unmatched pairs. 32353 records in RAM.
INFO 2026-06-08 08:43:38 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr11:68,261,851
INFO 2026-06-08 08:43:38 MarkDuplicates Tracking 634180 as yet unmatched pairs. 29924 records in RAM.
INFO 2026-06-08 08:43:40 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr11:69,641,494
INFO 2026-06-08 08:43:40 MarkDuplicates Tracking 634645 as yet unmatched pairs. 30389 records in RAM.
INFO 2026-06-08 08:43:41 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr11:70,486,050
INFO 2026-06-08 08:43:41 MarkDuplicates Tracking 630607 as yet unmatched pairs. 26350 records in RAM.
INFO 2026-06-08 08:43:43 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr11:72,015,730
INFO 2026-06-08 08:43:43 MarkDuplicates Tracking 628454 as yet unmatched pairs. 24197 records in RAM.
INFO 2026-06-08 08:43:45 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr11:73,311,629
INFO 2026-06-08 08:43:45 MarkDuplicates Tracking 626057 as yet unmatched pairs. 21799 records in RAM.
INFO 2026-06-08 08:43:46 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr11:75,798,294
INFO 2026-06-08 08:43:46 MarkDuplicates Tracking 623769 as yet unmatched pairs. 19510 records in RAM.
INFO 2026-06-08 08:43:48 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr11:85,663,912
INFO 2026-06-08 08:43:48 MarkDuplicates Tracking 621721 as yet unmatched pairs. 17461 records in RAM.
INFO 2026-06-08 08:43:50 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr11:101,127,828
INFO 2026-06-08 08:43:50 MarkDuplicates Tracking 620235 as yet unmatched pairs. 15969 records in RAM.
INFO 2026-06-08 08:43:51 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr11:110,257,881
INFO 2026-06-08 08:43:51 MarkDuplicates Tracking 617084 as yet unmatched pairs. 12815 records in RAM.
INFO 2026-06-08 08:43:53 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr11:117,187,782
INFO 2026-06-08 08:43:53 MarkDuplicates Tracking 614957 as yet unmatched pairs. 10687 records in RAM.
INFO 2026-06-08 08:43:55 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr11:118,597,900
INFO 2026-06-08 08:43:55 MarkDuplicates Tracking 613099 as yet unmatched pairs. 8829 records in RAM.
INFO 2026-06-08 08:43:56 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr11:119,069,449
INFO 2026-06-08 08:43:56 MarkDuplicates Tracking 610682 as yet unmatched pairs. 6411 records in RAM.
INFO 2026-06-08 08:43:58 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr11:123,097,888
INFO 2026-06-08 08:43:58 MarkDuplicates Tracking 608506 as yet unmatched pairs. 4233 records in RAM.
INFO 2026-06-08 08:44:00 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr11:128,974,457
INFO 2026-06-08 08:44:00 MarkDuplicates Tracking 606969 as yet unmatched pairs. 2695 records in RAM.
INFO 2026-06-08 08:44:02 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 2s. Last read position: chr12:285,506
INFO 2026-06-08 08:44:02 MarkDuplicates Tracking 604277 as yet unmatched pairs. 74892 records in RAM.
INFO 2026-06-08 08:44:05 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 2s. Last read position: chr12:2,799,158
INFO 2026-06-08 08:44:05 MarkDuplicates Tracking 603114 as yet unmatched pairs. 73729 records in RAM.
INFO 2026-06-08 08:44:07 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 2s. Last read position: chr12:6,341,787
INFO 2026-06-08 08:44:07 MarkDuplicates Tracking 600354 as yet unmatched pairs. 70958 records in RAM.
INFO 2026-06-08 08:44:08 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr12:6,766,631
INFO 2026-06-08 08:44:08 MarkDuplicates Tracking 598127 as yet unmatched pairs. 68731 records in RAM.
INFO 2026-06-08 08:44:10 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr12:6,982,745
INFO 2026-06-08 08:44:10 MarkDuplicates Tracking 595825 as yet unmatched pairs. 66429 records in RAM.
INFO 2026-06-08 08:44:12 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr12:10,218,116
INFO 2026-06-08 08:44:12 MarkDuplicates Tracking 593587 as yet unmatched pairs. 64191 records in RAM.
INFO 2026-06-08 08:44:13 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr12:14,787,092
INFO 2026-06-08 08:44:13 MarkDuplicates Tracking 591641 as yet unmatched pairs. 62241 records in RAM.
INFO 2026-06-08 08:44:15 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr12:30,718,845
INFO 2026-06-08 08:44:15 MarkDuplicates Tracking 589453 as yet unmatched pairs. 60053 records in RAM.
INFO 2026-06-08 08:44:17 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr12:47,785,390
INFO 2026-06-08 08:44:17 MarkDuplicates Tracking 587660 as yet unmatched pairs. 58258 records in RAM.
INFO 2026-06-08 08:44:18 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr12:49,031,728
INFO 2026-06-08 08:44:18 MarkDuplicates Tracking 585357 as yet unmatched pairs. 55953 records in RAM.
INFO 2026-06-08 08:44:20 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr12:49,097,702
INFO 2026-06-08 08:44:20 MarkDuplicates Tracking 583179 as yet unmatched pairs. 53774 records in RAM.
INFO 2026-06-08 08:44:22 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr12:49,759,305
INFO 2026-06-08 08:44:22 MarkDuplicates Tracking 582914 as yet unmatched pairs. 53508 records in RAM.
INFO 2026-06-08 08:44:23 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr12:52,054,678
INFO 2026-06-08 08:44:23 MarkDuplicates Tracking 580144 as yet unmatched pairs. 50737 records in RAM.
INFO 2026-06-08 08:44:25 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr12:53,049,173
INFO 2026-06-08 08:44:25 MarkDuplicates Tracking 577235 as yet unmatched pairs. 47828 records in RAM.
INFO 2026-06-08 08:44:26 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr12:53,459,344
INFO 2026-06-08 08:44:26 MarkDuplicates Tracking 575805 as yet unmatched pairs. 46397 records in RAM.
INFO 2026-06-08 08:44:28 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr12:54,282,623
INFO 2026-06-08 08:44:28 MarkDuplicates Tracking 573338 as yet unmatched pairs. 43930 records in RAM.
INFO 2026-06-08 08:44:30 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr12:56,085,104
INFO 2026-06-08 08:44:30 MarkDuplicates Tracking 571522 as yet unmatched pairs. 42113 records in RAM.
INFO 2026-06-08 08:44:32 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr12:56,245,445
INFO 2026-06-08 08:44:32 MarkDuplicates Tracking 568979 as yet unmatched pairs. 39570 records in RAM.
INFO 2026-06-08 08:44:34 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 2s. Last read position: chr12:56,714,625
INFO 2026-06-08 08:44:34 MarkDuplicates Tracking 569688 as yet unmatched pairs. 40278 records in RAM.
INFO 2026-06-08 08:44:36 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr12:57,173,175
INFO 2026-06-08 08:44:36 MarkDuplicates Tracking 565005 as yet unmatched pairs. 35593 records in RAM.
INFO 2026-06-08 08:44:37 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr12:57,490,251
INFO 2026-06-08 08:44:37 MarkDuplicates Tracking 562540 as yet unmatched pairs. 33124 records in RAM.
INFO 2026-06-08 08:44:39 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr12:62,648,542
INFO 2026-06-08 08:44:39 MarkDuplicates Tracking 559976 as yet unmatched pairs. 30560 records in RAM.
INFO 2026-06-08 08:44:41 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr12:71,632,287
INFO 2026-06-08 08:44:41 MarkDuplicates Tracking 558104 as yet unmatched pairs. 28685 records in RAM.
INFO 2026-06-08 08:44:42 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr12:93,378,385
INFO 2026-06-08 08:44:42 MarkDuplicates Tracking 556501 as yet unmatched pairs. 27080 records in RAM.
INFO 2026-06-08 08:44:44 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr12:101,764,890
INFO 2026-06-08 08:44:44 MarkDuplicates Tracking 553838 as yet unmatched pairs. 24416 records in RAM.
INFO 2026-06-08 08:44:46 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr12:108,339,117
INFO 2026-06-08 08:44:46 MarkDuplicates Tracking 551814 as yet unmatched pairs. 22381 records in RAM.
INFO 2026-06-08 08:44:47 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr12:110,730,592
INFO 2026-06-08 08:44:47 MarkDuplicates Tracking 549909 as yet unmatched pairs. 20474 records in RAM.
INFO 2026-06-08 08:44:49 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr12:113,174,652
INFO 2026-06-08 08:44:49 MarkDuplicates Tracking 547631 as yet unmatched pairs. 18196 records in RAM.
INFO 2026-06-08 08:44:50 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr12:115,966,188
INFO 2026-06-08 08:44:50 MarkDuplicates Tracking 545284 as yet unmatched pairs. 15848 records in RAM.
INFO 2026-06-08 08:44:52 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr12:120,131,988
INFO 2026-06-08 08:44:52 MarkDuplicates Tracking 543027 as yet unmatched pairs. 13586 records in RAM.
INFO 2026-06-08 08:44:54 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr12:120,695,126
INFO 2026-06-08 08:44:54 MarkDuplicates Tracking 541105 as yet unmatched pairs. 11664 records in RAM.
INFO 2026-06-08 08:44:55 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr12:122,272,889
INFO 2026-06-08 08:44:55 MarkDuplicates Tracking 538536 as yet unmatched pairs. 9090 records in RAM.
INFO 2026-06-08 08:44:57 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr12:124,012,489
INFO 2026-06-08 08:44:57 MarkDuplicates Tracking 536545 as yet unmatched pairs. 7097 records in RAM.
INFO 2026-06-08 08:44:59 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 2s. Last read position: chr12:124,495,157
INFO 2026-06-08 08:44:59 MarkDuplicates Tracking 534486 as yet unmatched pairs. 5037 records in RAM.
INFO 2026-06-08 08:45:01 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr12:132,069,541
INFO 2026-06-08 08:45:01 MarkDuplicates Tracking 532291 as yet unmatched pairs. 2840 records in RAM.
INFO 2026-06-08 08:45:03 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr12:132,816,790
INFO 2026-06-08 08:45:03 MarkDuplicates Tracking 530126 as yet unmatched pairs. 675 records in RAM.
INFO 2026-06-08 08:45:04 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr13:28,672,375
INFO 2026-06-08 08:45:04 MarkDuplicates Tracking 527898 as yet unmatched pairs. 9119 records in RAM.
INFO 2026-06-08 08:45:07 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 2s. Last read position: chr13:45,338,705
INFO 2026-06-08 08:45:07 MarkDuplicates Tracking 526325 as yet unmatched pairs. 7537 records in RAM.
INFO 2026-06-08 08:45:08 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr13:97,434,628
INFO 2026-06-08 08:45:08 MarkDuplicates Tracking 523891 as yet unmatched pairs. 5091 records in RAM.
INFO 2026-06-08 08:45:10 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr13:110,203,577
INFO 2026-06-08 08:45:10 MarkDuplicates Tracking 521907 as yet unmatched pairs. 3106 records in RAM.
INFO 2026-06-08 08:45:11 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr13:113,640,177
INFO 2026-06-08 08:45:11 MarkDuplicates Tracking 519349 as yet unmatched pairs. 547 records in RAM.
INFO 2026-06-08 08:45:13 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr14:21,357,974
INFO 2026-06-08 08:45:13 MarkDuplicates Tracking 517318 as yet unmatched pairs. 35857 records in RAM.
INFO 2026-06-08 08:45:15 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr14:23,033,608
INFO 2026-06-08 08:45:15 MarkDuplicates Tracking 515661 as yet unmatched pairs. 34200 records in RAM.
INFO 2026-06-08 08:45:17 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr14:24,005,901
INFO 2026-06-08 08:45:17 MarkDuplicates Tracking 513250 as yet unmatched pairs. 31789 records in RAM.
INFO 2026-06-08 08:45:18 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr14:24,376,832
INFO 2026-06-08 08:45:18 MarkDuplicates Tracking 511185 as yet unmatched pairs. 29723 records in RAM.
INFO 2026-06-08 08:45:20 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr14:35,404,564
INFO 2026-06-08 08:45:20 MarkDuplicates Tracking 508966 as yet unmatched pairs. 27501 records in RAM.
INFO 2026-06-08 08:45:21 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr14:49,851,807
INFO 2026-06-08 08:45:21 MarkDuplicates Tracking 506583 as yet unmatched pairs. 25118 records in RAM.
INFO 2026-06-08 08:45:23 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr14:60,291,397
INFO 2026-06-08 08:45:23 MarkDuplicates Tracking 504610 as yet unmatched pairs. 23144 records in RAM.
INFO 2026-06-08 08:45:25 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr14:68,912,178
INFO 2026-06-08 08:45:25 MarkDuplicates Tracking 502588 as yet unmatched pairs. 21122 records in RAM.
INFO 2026-06-08 08:45:26 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr14:74,295,176
INFO 2026-06-08 08:45:26 MarkDuplicates Tracking 500392 as yet unmatched pairs. 18925 records in RAM.
INFO 2026-06-08 08:45:28 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr14:75,437,990
INFO 2026-06-08 08:45:28 MarkDuplicates Tracking 498177 as yet unmatched pairs. 16709 records in RAM.
INFO 2026-06-08 08:45:30 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr14:91,272,991
INFO 2026-06-08 08:45:30 MarkDuplicates Tracking 496091 as yet unmatched pairs. 14619 records in RAM.
INFO 2026-06-08 08:45:31 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr14:94,623,752
INFO 2026-06-08 08:45:31 MarkDuplicates Tracking 493994 as yet unmatched pairs. 12522 records in RAM.
INFO 2026-06-08 08:45:33 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 2s. Last read position: chr14:100,334,971
INFO 2026-06-08 08:45:33 MarkDuplicates Tracking 491717 as yet unmatched pairs. 10229 records in RAM.
INFO 2026-06-08 08:45:36 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 2s. Last read position: chr14:102,208,886
INFO 2026-06-08 08:45:36 MarkDuplicates Tracking 489650 as yet unmatched pairs. 8157 records in RAM.
INFO 2026-06-08 08:45:38 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr14:104,713,289
INFO 2026-06-08 08:45:38 MarkDuplicates Tracking 487433 as yet unmatched pairs. 5938 records in RAM.
INFO 2026-06-08 08:45:40 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr14:105,051,685
INFO 2026-06-08 08:45:40 MarkDuplicates Tracking 484903 as yet unmatched pairs. 3408 records in RAM.
INFO 2026-06-08 08:45:41 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr14:105,707,242
INFO 2026-06-08 08:45:41 MarkDuplicates Tracking 485607 as yet unmatched pairs. 4109 records in RAM.
INFO 2026-06-08 08:45:43 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr15:28,142,838
INFO 2026-06-08 08:45:43 MarkDuplicates Tracking 480721 as yet unmatched pairs. 26298 records in RAM.
INFO 2026-06-08 08:45:44 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr15:34,527,638
INFO 2026-06-08 08:45:44 MarkDuplicates Tracking 479230 as yet unmatched pairs. 24806 records in RAM.
INFO 2026-06-08 08:45:46 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr15:40,853,586
INFO 2026-06-08 08:45:46 MarkDuplicates Tracking 477435 as yet unmatched pairs. 23009 records in RAM.
INFO 2026-06-08 08:45:47 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr15:43,364,221
INFO 2026-06-08 08:45:47 MarkDuplicates Tracking 475306 as yet unmatched pairs. 20880 records in RAM.
INFO 2026-06-08 08:45:49 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr15:45,606,437
INFO 2026-06-08 08:45:49 MarkDuplicates Tracking 473351 as yet unmatched pairs. 18925 records in RAM.
INFO 2026-06-08 08:45:51 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr15:57,273,152
INFO 2026-06-08 08:45:51 MarkDuplicates Tracking 471252 as yet unmatched pairs. 16826 records in RAM.
INFO 2026-06-08 08:45:52 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr15:64,156,751
INFO 2026-06-08 08:45:52 MarkDuplicates Tracking 469344 as yet unmatched pairs. 14918 records in RAM.
INFO 2026-06-08 08:45:54 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr15:69,452,954
INFO 2026-06-08 08:45:54 MarkDuplicates Tracking 468152 as yet unmatched pairs. 13726 records in RAM.
INFO 2026-06-08 08:45:56 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr15:73,927,262
INFO 2026-06-08 08:45:56 MarkDuplicates Tracking 464825 as yet unmatched pairs. 10398 records in RAM.
INFO 2026-06-08 08:45:57 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr15:75,676,237
INFO 2026-06-08 08:45:57 MarkDuplicates Tracking 462716 as yet unmatched pairs. 8288 records in RAM.
INFO 2026-06-08 08:45:59 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr15:84,197,303
INFO 2026-06-08 08:45:59 MarkDuplicates Tracking 460679 as yet unmatched pairs. 6248 records in RAM.
INFO 2026-06-08 08:46:00 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr15:88,899,428
INFO 2026-06-08 08:46:00 MarkDuplicates Tracking 458974 as yet unmatched pairs. 4541 records in RAM.
INFO 2026-06-08 08:46:02 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr15:92,617,579
INFO 2026-06-08 08:46:02 MarkDuplicates Tracking 456871 as yet unmatched pairs. 2438 records in RAM.
INFO 2026-06-08 08:46:03 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr15:101,973,654
INFO 2026-06-08 08:46:03 MarkDuplicates Tracking 454459 as yet unmatched pairs. 18 records in RAM.
INFO 2026-06-08 08:46:06 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 2s. Last read position: chr16:661,579
INFO 2026-06-08 08:46:06 MarkDuplicates Tracking 452283 as yet unmatched pairs. 77143 records in RAM.
INFO 2026-06-08 08:46:09 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 2s. Last read position: chr16:1,220,714
INFO 2026-06-08 08:46:09 MarkDuplicates Tracking 450063 as yet unmatched pairs. 74921 records in RAM.
INFO 2026-06-08 08:46:11 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr16:1,766,009
INFO 2026-06-08 08:46:11 MarkDuplicates Tracking 447487 as yet unmatched pairs. 72345 records in RAM.
INFO 2026-06-08 08:46:12 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr16:2,090,079
INFO 2026-06-08 08:46:12 MarkDuplicates Tracking 445237 as yet unmatched pairs. 70095 records in RAM.
INFO 2026-06-08 08:46:14 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr16:2,319,685
INFO 2026-06-08 08:46:14 MarkDuplicates Tracking 442778 as yet unmatched pairs. 67636 records in RAM.
INFO 2026-06-08 08:46:16 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr16:2,765,979
INFO 2026-06-08 08:46:16 MarkDuplicates Tracking 441156 as yet unmatched pairs. 66014 records in RAM.
INFO 2026-06-08 08:46:17 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr16:3,289,736
INFO 2026-06-08 08:46:17 MarkDuplicates Tracking 438203 as yet unmatched pairs. 63060 records in RAM.
INFO 2026-06-08 08:46:19 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr16:4,610,522
INFO 2026-06-08 08:46:19 MarkDuplicates Tracking 436004 as yet unmatched pairs. 60861 records in RAM.
INFO 2026-06-08 08:46:20 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr16:11,691,752
INFO 2026-06-08 08:46:20 MarkDuplicates Tracking 433766 as yet unmatched pairs. 58622 records in RAM.
INFO 2026-06-08 08:46:22 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr16:14,911,842
INFO 2026-06-08 08:46:22 MarkDuplicates Tracking 432084 as yet unmatched pairs. 56940 records in RAM.
INFO 2026-06-08 08:46:23 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr16:15,136,998
INFO 2026-06-08 08:46:23 MarkDuplicates Tracking 430975 as yet unmatched pairs. 55831 records in RAM.
INFO 2026-06-08 08:46:25 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr16:16,327,808
INFO 2026-06-08 08:46:25 MarkDuplicates Tracking 429802 as yet unmatched pairs. 54658 records in RAM.
INFO 2026-06-08 08:46:26 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr16:18,345,460
INFO 2026-06-08 08:46:26 MarkDuplicates Tracking 429466 as yet unmatched pairs. 54321 records in RAM.
INFO 2026-06-08 08:46:27 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr16:18,523,842
INFO 2026-06-08 08:46:27 MarkDuplicates Tracking 428398 as yet unmatched pairs. 53253 records in RAM.
INFO 2026-06-08 08:46:28 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr16:21,402,470
INFO 2026-06-08 08:46:28 MarkDuplicates Tracking 426575 as yet unmatched pairs. 51430 records in RAM.
INFO 2026-06-08 08:46:30 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr16:21,404,980
INFO 2026-06-08 08:46:30 MarkDuplicates Tracking 426360 as yet unmatched pairs. 51215 records in RAM.
INFO 2026-06-08 08:46:31 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr16:21,834,776
INFO 2026-06-08 08:46:31 MarkDuplicates Tracking 424820 as yet unmatched pairs. 49675 records in RAM.
INFO 2026-06-08 08:46:32 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr16:21,837,727
INFO 2026-06-08 08:46:32 MarkDuplicates Tracking 424501 as yet unmatched pairs. 49356 records in RAM.
INFO 2026-06-08 08:46:34 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr16:22,486,225
INFO 2026-06-08 08:46:34 MarkDuplicates Tracking 423183 as yet unmatched pairs. 48038 records in RAM.
INFO 2026-06-08 08:46:35 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr16:22,534,600
INFO 2026-06-08 08:46:35 MarkDuplicates Tracking 423752 as yet unmatched pairs. 48607 records in RAM.
INFO 2026-06-08 08:46:36 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 1s. Last read position: chr16:23,388,958
INFO 2026-06-08 08:46:36 MarkDuplicates Tracking 422184 as yet unmatched pairs. 47039 records in RAM.
INFO 2026-06-08 08:46:38 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr16:28,379,750
INFO 2026-06-08 08:46:38 MarkDuplicates Tracking 420234 as yet unmatched pairs. 45089 records in RAM.
INFO 2026-06-08 08:46:39 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr16:28,835,293
INFO 2026-06-08 08:46:39 MarkDuplicates Tracking 418797 as yet unmatched pairs. 43652 records in RAM.
INFO 2026-06-08 08:46:41 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr16:29,436,446
INFO 2026-06-08 08:46:41 MarkDuplicates Tracking 418209 as yet unmatched pairs. 43064 records in RAM.
INFO 2026-06-08 08:46:42 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr16:29,500,114
INFO 2026-06-08 08:46:42 MarkDuplicates Tracking 416954 as yet unmatched pairs. 41808 records in RAM.
INFO 2026-06-08 08:46:45 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 2s. Last read position: chr16:30,068,922
INFO 2026-06-08 08:46:45 MarkDuplicates Tracking 416472 as yet unmatched pairs. 41326 records in RAM.
INFO 2026-06-08 08:46:46 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr16:30,225,689
INFO 2026-06-08 08:46:46 MarkDuplicates Tracking 413594 as yet unmatched pairs. 38448 records in RAM.
INFO 2026-06-08 08:46:48 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 1s. Last read position: chr16:30,666,525
INFO 2026-06-08 08:46:48 MarkDuplicates Tracking 411926 as yet unmatched pairs. 36780 records in RAM.
INFO 2026-06-08 08:46:49 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr16:30,930,170
INFO 2026-06-08 08:46:49 MarkDuplicates Tracking 409752 as yet unmatched pairs. 34605 records in RAM.
INFO 2026-06-08 08:46:51 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr16:31,184,207
INFO 2026-06-08 08:46:51 MarkDuplicates Tracking 408340 as yet unmatched pairs. 33193 records in RAM.
INFO 2026-06-08 08:46:53 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr16:34,267,518
INFO 2026-06-08 08:46:53 MarkDuplicates Tracking 405118 as yet unmatched pairs. 29971 records in RAM.
INFO 2026-06-08 08:46:54 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr16:54,285,418
INFO 2026-06-08 08:46:54 MarkDuplicates Tracking 403598 as yet unmatched pairs. 28449 records in RAM.
INFO 2026-06-08 08:46:56 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr16:57,382,361
INFO 2026-06-08 08:46:56 MarkDuplicates Tracking 400685 as yet unmatched pairs. 25528 records in RAM.
INFO 2026-06-08 08:46:57 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr16:67,390,487
INFO 2026-06-08 08:46:57 MarkDuplicates Tracking 398671 as yet unmatched pairs. 23512 records in RAM.
INFO 2026-06-08 08:46:59 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 1s. Last read position: chr16:68,737,396
INFO 2026-06-08 08:46:59 MarkDuplicates Tracking 397489 as yet unmatched pairs. 22330 records in RAM.
INFO 2026-06-08 08:47:00 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr16:70,042,967
INFO 2026-06-08 08:47:00 MarkDuplicates Tracking 394189 as yet unmatched pairs. 19029 records in RAM.
INFO 2026-06-08 08:47:02 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 1s. Last read position: chr16:71,448,758
INFO 2026-06-08 08:47:02 MarkDuplicates Tracking 391950 as yet unmatched pairs. 16789 records in RAM.
INFO 2026-06-08 08:47:03 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr16:74,477,422
INFO 2026-06-08 08:47:03 MarkDuplicates Tracking 390012 as yet unmatched pairs. 14847 records in RAM.
INFO 2026-06-08 08:47:05 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 1s. Last read position: chr16:83,808,099
INFO 2026-06-08 08:47:05 MarkDuplicates Tracking 389010 as yet unmatched pairs. 13843 records in RAM.
INFO 2026-06-08 08:47:07 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr16:85,654,981
INFO 2026-06-08 08:47:07 MarkDuplicates Tracking 385914 as yet unmatched pairs. 10746 records in RAM.
INFO 2026-06-08 08:47:08 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 1s. Last read position: chr16:88,430,000
INFO 2026-06-08 08:47:08 MarkDuplicates Tracking 383071 as yet unmatched pairs. 7900 records in RAM.
INFO 2026-06-08 08:47:11 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 2s. Last read position: chr16:88,731,783
INFO 2026-06-08 08:47:11 MarkDuplicates Tracking 381190 as yet unmatched pairs. 6018 records in RAM.
INFO 2026-06-08 08:47:13 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr16:89,556,020
INFO 2026-06-08 08:47:13 MarkDuplicates Tracking 378601 as yet unmatched pairs. 3428 records in RAM.
INFO 2026-06-08 08:47:14 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr16:89,850,242
INFO 2026-06-08 08:47:14 MarkDuplicates Tracking 376060 as yet unmatched pairs. 887 records in RAM.
INFO 2026-06-08 08:47:17 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 2s. Last read position: chr17:1,498,112
INFO 2026-06-08 08:47:17 MarkDuplicates Tracking 373800 as yet unmatched pairs. 100938 records in RAM.
INFO 2026-06-08 08:47:18 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr17:2,698,241
INFO 2026-06-08 08:47:18 MarkDuplicates Tracking 371615 as yet unmatched pairs. 98752 records in RAM.
INFO 2026-06-08 08:47:20 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 1s. Last read position: chr17:4,969,230
INFO 2026-06-08 08:47:20 MarkDuplicates Tracking 369279 as yet unmatched pairs. 96414 records in RAM.
INFO 2026-06-08 08:47:22 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr17:7,311,394
INFO 2026-06-08 08:47:22 MarkDuplicates Tracking 367711 as yet unmatched pairs. 94839 records in RAM.
INFO 2026-06-08 08:47:23 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr17:7,578,173
INFO 2026-06-08 08:47:23 MarkDuplicates Tracking 365244 as yet unmatched pairs. 92372 records in RAM.
INFO 2026-06-08 08:47:25 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 1s. Last read position: chr17:8,313,045
INFO 2026-06-08 08:47:25 MarkDuplicates Tracking 362941 as yet unmatched pairs. 90067 records in RAM.
INFO 2026-06-08 08:47:27 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 1s. Last read position: chr17:17,158,679
INFO 2026-06-08 08:47:27 MarkDuplicates Tracking 361234 as yet unmatched pairs. 88360 records in RAM.
INFO 2026-06-08 08:47:29 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 1s. Last read position: chr17:18,579,941
INFO 2026-06-08 08:47:29 MarkDuplicates Tracking 358587 as yet unmatched pairs. 85712 records in RAM.
INFO 2026-06-08 08:47:30 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 1s. Last read position: chr17:28,675,408
INFO 2026-06-08 08:47:30 MarkDuplicates Tracking 356739 as yet unmatched pairs. 83856 records in RAM.
INFO 2026-06-08 08:47:32 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 1s. Last read position: chr17:31,521,956
INFO 2026-06-08 08:47:32 MarkDuplicates Tracking 354561 as yet unmatched pairs. 81678 records in RAM.
INFO 2026-06-08 08:47:33 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 1s. Last read position: chr17:37,258,267
INFO 2026-06-08 08:47:33 MarkDuplicates Tracking 352658 as yet unmatched pairs. 79775 records in RAM.
INFO 2026-06-08 08:47:35 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 1s. Last read position: chr17:39,204,561
INFO 2026-06-08 08:47:35 MarkDuplicates Tracking 350759 as yet unmatched pairs. 77876 records in RAM.
INFO 2026-06-08 08:47:37 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 1s. Last read position: chr17:39,726,861
INFO 2026-06-08 08:47:37 MarkDuplicates Tracking 348664 as yet unmatched pairs. 75780 records in RAM.
INFO 2026-06-08 08:47:38 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 1s. Last read position: chr17:40,456,467
INFO 2026-06-08 08:47:38 MarkDuplicates Tracking 346048 as yet unmatched pairs. 73164 records in RAM.
INFO 2026-06-08 08:47:41 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 2s. Last read position: chr17:41,893,115
INFO 2026-06-08 08:47:41 MarkDuplicates Tracking 343488 as yet unmatched pairs. 70604 records in RAM.
INFO 2026-06-08 08:47:42 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 1s. Last read position: chr17:42,815,984
INFO 2026-06-08 08:47:42 MarkDuplicates Tracking 341000 as yet unmatched pairs. 68116 records in RAM.
INFO 2026-06-08 08:47:44 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 1s. Last read position: chr17:44,354,414
INFO 2026-06-08 08:47:44 MarkDuplicates Tracking 338900 as yet unmatched pairs. 66014 records in RAM.
INFO 2026-06-08 08:47:45 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:15:11s. Time for last 1,000,000: 1s. Last read position: chr17:47,049,183
INFO 2026-06-08 08:47:45 MarkDuplicates Tracking 337105 as yet unmatched pairs. 64218 records in RAM.
INFO 2026-06-08 08:47:47 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,415
INFO 2026-06-08 08:47:47 MarkDuplicates Tracking 336400 as yet unmatched pairs. 63511 records in RAM.
INFO 2026-06-08 08:47:49 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,758
INFO 2026-06-08 08:47:49 MarkDuplicates Tracking 339701 as yet unmatched pairs. 66812 records in RAM.
INFO 2026-06-08 08:47:51 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:15:16s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,528
INFO 2026-06-08 08:47:51 MarkDuplicates Tracking 344213 as yet unmatched pairs. 71324 records in RAM.
INFO 2026-06-08 08:47:52 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:15:18s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,602
INFO 2026-06-08 08:47:52 MarkDuplicates Tracking 341976 as yet unmatched pairs. 69087 records in RAM.
INFO 2026-06-08 08:47:54 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,393
INFO 2026-06-08 08:47:54 MarkDuplicates Tracking 335621 as yet unmatched pairs. 62731 records in RAM.
INFO 2026-06-08 08:47:56 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:15:21s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,863
INFO 2026-06-08 08:47:56 MarkDuplicates Tracking 343245 as yet unmatched pairs. 70355 records in RAM.
INFO 2026-06-08 08:47:57 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:15:23s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,550
INFO 2026-06-08 08:47:57 MarkDuplicates Tracking 333289 as yet unmatched pairs. 60399 records in RAM.
INFO 2026-06-08 08:47:59 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,018
INFO 2026-06-08 08:47:59 MarkDuplicates Tracking 331007 as yet unmatched pairs. 58117 records in RAM.
INFO 2026-06-08 08:48:01 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:15:26s. Time for last 1,000,000: 2s. Last read position: chr17:50,193,942
INFO 2026-06-08 08:48:01 MarkDuplicates Tracking 331099 as yet unmatched pairs. 58209 records in RAM.
INFO 2026-06-08 08:48:03 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:15:28s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,409
INFO 2026-06-08 08:48:03 MarkDuplicates Tracking 333632 as yet unmatched pairs. 60742 records in RAM.
INFO 2026-06-08 08:48:04 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:15:30s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,269
INFO 2026-06-08 08:48:04 MarkDuplicates Tracking 324521 as yet unmatched pairs. 51631 records in RAM.
INFO 2026-06-08 08:48:07 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:15:32s. Time for last 1,000,000: 2s. Last read position: chr17:50,196,156
INFO 2026-06-08 08:48:07 MarkDuplicates Tracking 325740 as yet unmatched pairs. 52850 records in RAM.
INFO 2026-06-08 08:48:09 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:15:34s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,650
INFO 2026-06-08 08:48:09 MarkDuplicates Tracking 330859 as yet unmatched pairs. 57969 records in RAM.
INFO 2026-06-08 08:48:11 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:15:36s. Time for last 1,000,000: 1s. Last read position: chr17:50,198,176
INFO 2026-06-08 08:48:11 MarkDuplicates Tracking 314778 as yet unmatched pairs. 41888 records in RAM.
INFO 2026-06-08 08:48:13 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:15:38s. Time for last 1,000,000: 2s. Last read position: chr17:50,199,555
INFO 2026-06-08 08:48:13 MarkDuplicates Tracking 307576 as yet unmatched pairs. 34685 records in RAM.
INFO 2026-06-08 08:48:14 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:15:40s. Time for last 1,000,000: 1s. Last read position: chr17:50,974,878
INFO 2026-06-08 08:48:14 MarkDuplicates Tracking 299726 as yet unmatched pairs. 26835 records in RAM.
INFO 2026-06-08 08:48:16 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:15:41s. Time for last 1,000,000: 1s. Last read position: chr17:59,677,187
INFO 2026-06-08 08:48:16 MarkDuplicates Tracking 298372 as yet unmatched pairs. 25478 records in RAM.
INFO 2026-06-08 08:48:18 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:15:43s. Time for last 1,000,000: 1s. Last read position: chr17:63,830,807
INFO 2026-06-08 08:48:18 MarkDuplicates Tracking 295517 as yet unmatched pairs. 22622 records in RAM.
INFO 2026-06-08 08:48:19 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:15:44s. Time for last 1,000,000: 1s. Last read position: chr17:68,525,773
INFO 2026-06-08 08:48:19 MarkDuplicates Tracking 294130 as yet unmatched pairs. 21232 records in RAM.
INFO 2026-06-08 08:48:21 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:15:46s. Time for last 1,000,000: 1s. Last read position: chr17:75,136,030
INFO 2026-06-08 08:48:21 MarkDuplicates Tracking 291367 as yet unmatched pairs. 18468 records in RAM.
INFO 2026-06-08 08:48:22 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:15:48s. Time for last 1,000,000: 1s. Last read position: chr17:75,896,584
INFO 2026-06-08 08:48:22 MarkDuplicates Tracking 288976 as yet unmatched pairs. 16077 records in RAM.
INFO 2026-06-08 08:48:24 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:15:49s. Time for last 1,000,000: 1s. Last read position: chr17:78,171,796
INFO 2026-06-08 08:48:24 MarkDuplicates Tracking 286853 as yet unmatched pairs. 13954 records in RAM.
INFO 2026-06-08 08:48:26 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:15:51s. Time for last 1,000,000: 1s. Last read position: chr17:80,287,838
INFO 2026-06-08 08:48:26 MarkDuplicates Tracking 284543 as yet unmatched pairs. 11644 records in RAM.
INFO 2026-06-08 08:48:27 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:15:52s. Time for last 1,000,000: 1s. Last read position: chr17:81,559,368
INFO 2026-06-08 08:48:27 MarkDuplicates Tracking 282210 as yet unmatched pairs. 9311 records in RAM.
INFO 2026-06-08 08:48:29 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:15:54s. Time for last 1,000,000: 1s. Last read position: chr17:82,054,507
INFO 2026-06-08 08:48:29 MarkDuplicates Tracking 279773 as yet unmatched pairs. 6874 records in RAM.
INFO 2026-06-08 08:48:30 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:15:56s. Time for last 1,000,000: 1s. Last read position: chr17:82,085,614
INFO 2026-06-08 08:48:30 MarkDuplicates Tracking 278066 as yet unmatched pairs. 5166 records in RAM.
INFO 2026-06-08 08:48:32 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:15:57s. Time for last 1,000,000: 1s. Last read position: chr17:82,093,344
INFO 2026-06-08 08:48:32 MarkDuplicates Tracking 275307 as yet unmatched pairs. 2404 records in RAM.
INFO 2026-06-08 08:48:34 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:15:59s. Time for last 1,000,000: 1s. Last read position: chr18:5,979,010
INFO 2026-06-08 08:48:34 MarkDuplicates Tracking 272054 as yet unmatched pairs. 10086 records in RAM.
INFO 2026-06-08 08:48:36 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:16:01s. Time for last 1,000,000: 1s. Last read position: chr18:21,849,196
INFO 2026-06-08 08:48:36 MarkDuplicates Tracking 270067 as yet unmatched pairs. 8098 records in RAM.
INFO 2026-06-08 08:48:38 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:16:03s. Time for last 1,000,000: 1s. Last read position: chr18:36,126,348
INFO 2026-06-08 08:48:38 MarkDuplicates Tracking 268273 as yet unmatched pairs. 6300 records in RAM.
INFO 2026-06-08 08:48:39 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:16:05s. Time for last 1,000,000: 1s. Last read position: chr18:50,286,192
INFO 2026-06-08 08:48:39 MarkDuplicates Tracking 266048 as yet unmatched pairs. 4071 records in RAM.
INFO 2026-06-08 08:48:41 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:16:06s. Time for last 1,000,000: 1s. Last read position: chr18:63,318,591
INFO 2026-06-08 08:48:41 MarkDuplicates Tracking 263610 as yet unmatched pairs. 1632 records in RAM.
INFO 2026-06-08 08:48:44 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:16:09s. Time for last 1,000,000: 2s. Last read position: chr19:580,652
INFO 2026-06-08 08:48:44 MarkDuplicates Tracking 261983 as yet unmatched pairs. 123291 records in RAM.
INFO 2026-06-08 08:48:45 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:16:10s. Time for last 1,000,000: 1s. Last read position: chr19:1,014,428
INFO 2026-06-08 08:48:45 MarkDuplicates Tracking 259305 as yet unmatched pairs. 120612 records in RAM.
INFO 2026-06-08 08:48:47 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:16:12s. Time for last 1,000,000: 1s. Last read position: chr19:1,370,960
INFO 2026-06-08 08:48:47 MarkDuplicates Tracking 256660 as yet unmatched pairs. 117966 records in RAM.
INFO 2026-06-08 08:48:49 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:16:14s. Time for last 1,000,000: 1s. Last read position: chr19:1,924,135
INFO 2026-06-08 08:48:49 MarkDuplicates Tracking 254234 as yet unmatched pairs. 115540 records in RAM.
INFO 2026-06-08 08:48:50 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:16:16s. Time for last 1,000,000: 1s. Last read position: chr19:2,427,315
INFO 2026-06-08 08:48:50 MarkDuplicates Tracking 251656 as yet unmatched pairs. 112961 records in RAM.
INFO 2026-06-08 08:48:52 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:16:17s. Time for last 1,000,000: 1s. Last read position: chr19:3,591,672
INFO 2026-06-08 08:48:52 MarkDuplicates Tracking 248999 as yet unmatched pairs. 110303 records in RAM.
INFO 2026-06-08 08:48:54 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:16:19s. Time for last 1,000,000: 1s. Last read position: chr19:4,511,608
INFO 2026-06-08 08:48:54 MarkDuplicates Tracking 246796 as yet unmatched pairs. 108100 records in RAM.
INFO 2026-06-08 08:48:55 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:16:21s. Time for last 1,000,000: 1s. Last read position: chr19:5,215,288
INFO 2026-06-08 08:48:55 MarkDuplicates Tracking 244565 as yet unmatched pairs. 105869 records in RAM.
INFO 2026-06-08 08:48:57 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:16:22s. Time for last 1,000,000: 1s. Last read position: chr19:6,383,310
INFO 2026-06-08 08:48:57 MarkDuplicates Tracking 242160 as yet unmatched pairs. 103463 records in RAM.
INFO 2026-06-08 08:48:59 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:16:24s. Time for last 1,000,000: 1s. Last read position: chr19:7,620,927
INFO 2026-06-08 08:48:59 MarkDuplicates Tracking 239949 as yet unmatched pairs. 101252 records in RAM.
INFO 2026-06-08 08:49:01 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:16:26s. Time for last 1,000,000: 2s. Last read position: chr19:8,554,643
INFO 2026-06-08 08:49:01 MarkDuplicates Tracking 237639 as yet unmatched pairs. 98942 records in RAM.
INFO 2026-06-08 08:49:03 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:16:28s. Time for last 1,000,000: 1s. Last read position: chr19:10,567,199
INFO 2026-06-08 08:49:03 MarkDuplicates Tracking 235275 as yet unmatched pairs. 96578 records in RAM.
INFO 2026-06-08 08:49:04 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:16:30s. Time for last 1,000,000: 1s. Last read position: chr19:11,193,495
INFO 2026-06-08 08:49:04 MarkDuplicates Tracking 233211 as yet unmatched pairs. 94514 records in RAM.
INFO 2026-06-08 08:49:06 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:16:31s. Time for last 1,000,000: 1s. Last read position: chr19:12,669,190
INFO 2026-06-08 08:49:06 MarkDuplicates Tracking 230960 as yet unmatched pairs. 92263 records in RAM.
INFO 2026-06-08 08:51:10 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 124s. Last read position: chr19:13,135,916
INFO 2026-06-08 08:51:10 MarkDuplicates Tracking 228872 as yet unmatched pairs. 90175 records in RAM.
INFO 2026-06-08 08:51:12 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:18:37s. Time for last 1,000,000: 1s. Last read position: chr19:14,515,948
INFO 2026-06-08 08:51:12 MarkDuplicates Tracking 226830 as yet unmatched pairs. 88133 records in RAM.
INFO 2026-06-08 08:51:14 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 1s. Last read position: chr19:15,244,358
INFO 2026-06-08 08:51:14 MarkDuplicates Tracking 224936 as yet unmatched pairs. 86239 records in RAM.
INFO 2026-06-08 08:51:16 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:18:41s. Time for last 1,000,000: 1s. Last read position: chr19:16,325,689
INFO 2026-06-08 08:51:16 MarkDuplicates Tracking 222030 as yet unmatched pairs. 83333 records in RAM.
INFO 2026-06-08 08:51:17 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:18:43s. Time for last 1,000,000: 1s. Last read position: chr19:17,487,200
INFO 2026-06-08 08:51:17 MarkDuplicates Tracking 219606 as yet unmatched pairs. 80909 records in RAM.
INFO 2026-06-08 08:51:19 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 1s. Last read position: chr19:18,285,295
INFO 2026-06-08 08:51:19 MarkDuplicates Tracking 217061 as yet unmatched pairs. 78362 records in RAM.
INFO 2026-06-08 08:51:21 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 1s. Last read position: chr19:18,922,356
INFO 2026-06-08 08:51:21 MarkDuplicates Tracking 214523 as yet unmatched pairs. 75824 records in RAM.
INFO 2026-06-08 08:51:22 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 1s. Last read position: chr19:29,208,096
INFO 2026-06-08 08:51:22 MarkDuplicates Tracking 212646 as yet unmatched pairs. 73947 records in RAM.
INFO 2026-06-08 08:51:24 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 1s. Last read position: chr19:34,431,925
INFO 2026-06-08 08:51:24 MarkDuplicates Tracking 210248 as yet unmatched pairs. 71549 records in RAM.
INFO 2026-06-08 08:51:26 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:18:51s. Time for last 1,000,000: 1s. Last read position: chr19:35,547,324
INFO 2026-06-08 08:51:26 MarkDuplicates Tracking 207469 as yet unmatched pairs. 68767 records in RAM.
INFO 2026-06-08 08:51:27 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 1s. Last read position: chr19:35,787,840
INFO 2026-06-08 08:51:27 MarkDuplicates Tracking 204573 as yet unmatched pairs. 65871 records in RAM.
INFO 2026-06-08 08:51:29 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 1s. Last read position: chr19:38,119,767
INFO 2026-06-08 08:51:29 MarkDuplicates Tracking 202361 as yet unmatched pairs. 63658 records in RAM.
INFO 2026-06-08 08:51:30 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 1s. Last read position: chr19:38,724,472
INFO 2026-06-08 08:51:30 MarkDuplicates Tracking 200703 as yet unmatched pairs. 62000 records in RAM.
INFO 2026-06-08 08:51:32 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 1s. Last read position: chr19:39,406,908
INFO 2026-06-08 08:51:32 MarkDuplicates Tracking 201623 as yet unmatched pairs. 62919 records in RAM.
INFO 2026-06-08 08:51:34 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 1s. Last read position: chr19:39,539,631
INFO 2026-06-08 08:51:34 MarkDuplicates Tracking 195624 as yet unmatched pairs. 56920 records in RAM.
INFO 2026-06-08 08:51:36 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 1s. Last read position: chr19:40,371,747
INFO 2026-06-08 08:51:36 MarkDuplicates Tracking 193749 as yet unmatched pairs. 55045 records in RAM.
INFO 2026-06-08 08:51:37 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:19:02s. Time for last 1,000,000: 1s. Last read position: chr19:41,276,151
INFO 2026-06-08 08:51:37 MarkDuplicates Tracking 191335 as yet unmatched pairs. 52631 records in RAM.
INFO 2026-06-08 08:51:39 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 2s. Last read position: chr19:42,079,846
INFO 2026-06-08 08:51:39 MarkDuplicates Tracking 188905 as yet unmatched pairs. 50201 records in RAM.
INFO 2026-06-08 08:51:41 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chr19:42,289,862
INFO 2026-06-08 08:51:41 MarkDuplicates Tracking 187222 as yet unmatched pairs. 48516 records in RAM.
INFO 2026-06-08 08:51:43 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 1s. Last read position: chr19:42,410,767
INFO 2026-06-08 08:51:43 MarkDuplicates Tracking 184123 as yet unmatched pairs. 45401 records in RAM.
INFO 2026-06-08 08:51:45 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 2s. Last read position: chr19:44,814,608
INFO 2026-06-08 08:51:45 MarkDuplicates Tracking 182126 as yet unmatched pairs. 43404 records in RAM.
INFO 2026-06-08 08:51:47 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 2s. Last read position: chr19:45,145,424
INFO 2026-06-08 08:51:47 MarkDuplicates Tracking 179600 as yet unmatched pairs. 40877 records in RAM.
INFO 2026-06-08 08:51:48 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 1s. Last read position: chr19:45,687,603
INFO 2026-06-08 08:51:48 MarkDuplicates Tracking 177605 as yet unmatched pairs. 38882 records in RAM.
INFO 2026-06-08 08:51:50 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chr19:46,609,195
INFO 2026-06-08 08:51:50 MarkDuplicates Tracking 174896 as yet unmatched pairs. 36173 records in RAM.
INFO 2026-06-08 08:51:52 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 2s. Last read position: chr19:47,320,040
INFO 2026-06-08 08:51:52 MarkDuplicates Tracking 172361 as yet unmatched pairs. 33638 records in RAM.
INFO 2026-06-08 08:51:53 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 1s. Last read position: chr19:48,197,242
INFO 2026-06-08 08:51:53 MarkDuplicates Tracking 170113 as yet unmatched pairs. 31390 records in RAM.
INFO 2026-06-08 08:51:55 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chr19:48,750,587
INFO 2026-06-08 08:51:55 MarkDuplicates Tracking 167652 as yet unmatched pairs. 28929 records in RAM.
INFO 2026-06-08 08:51:56 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chr19:49,153,927
INFO 2026-06-08 08:51:56 MarkDuplicates Tracking 165334 as yet unmatched pairs. 26611 records in RAM.
INFO 2026-06-08 08:51:58 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 1s. Last read position: chr19:49,514,277
INFO 2026-06-08 08:51:58 MarkDuplicates Tracking 163616 as yet unmatched pairs. 24893 records in RAM.
INFO 2026-06-08 08:52:00 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: chr19:49,666,730
INFO 2026-06-08 08:52:00 MarkDuplicates Tracking 160868 as yet unmatched pairs. 22145 records in RAM.
INFO 2026-06-08 08:52:01 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 1s. Last read position: chr19:49,932,623
INFO 2026-06-08 08:52:01 MarkDuplicates Tracking 158497 as yet unmatched pairs. 19774 records in RAM.
INFO 2026-06-08 08:52:02 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 1s. Last read position: chr19:50,878,405
INFO 2026-06-08 08:52:02 MarkDuplicates Tracking 156757 as yet unmatched pairs. 18034 records in RAM.
INFO 2026-06-08 08:52:04 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chr19:52,157,492
INFO 2026-06-08 08:52:04 MarkDuplicates Tracking 153341 as yet unmatched pairs. 14617 records in RAM.
INFO 2026-06-08 08:52:06 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 1s. Last read position: chr19:54,148,648
INFO 2026-06-08 08:52:06 MarkDuplicates Tracking 151260 as yet unmatched pairs. 12533 records in RAM.
INFO 2026-06-08 08:52:08 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 2s. Last read position: chr19:54,461,521
INFO 2026-06-08 08:52:08 MarkDuplicates Tracking 149771 as yet unmatched pairs. 11044 records in RAM.
INFO 2026-06-08 08:52:10 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 2s. Last read position: chr19:55,484,305
INFO 2026-06-08 08:52:10 MarkDuplicates Tracking 146733 as yet unmatched pairs. 8006 records in RAM.
INFO 2026-06-08 08:52:12 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 2s. Last read position: chr19:56,814,020
INFO 2026-06-08 08:52:12 MarkDuplicates Tracking 145224 as yet unmatched pairs. 6497 records in RAM.
INFO 2026-06-08 08:52:14 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 1s. Last read position: chr19:57,841,414
INFO 2026-06-08 08:52:14 MarkDuplicates Tracking 142811 as yet unmatched pairs. 4084 records in RAM.
INFO 2026-06-08 08:52:15 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chr19:58,417,622
INFO 2026-06-08 08:52:15 MarkDuplicates Tracking 140185 as yet unmatched pairs. 1458 records in RAM.
INFO 2026-06-08 08:52:17 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 2s. Last read position: chr20:1,135,162
INFO 2026-06-08 08:52:17 MarkDuplicates Tracking 137705 as yet unmatched pairs. 45697 records in RAM.
INFO 2026-06-08 08:52:19 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 1s. Last read position: chr20:3,591,225
INFO 2026-06-08 08:52:19 MarkDuplicates Tracking 135327 as yet unmatched pairs. 43319 records in RAM.
INFO 2026-06-08 08:52:20 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 1s. Last read position: chr20:16,367,481
INFO 2026-06-08 08:52:20 MarkDuplicates Tracking 132967 as yet unmatched pairs. 40958 records in RAM.
INFO 2026-06-08 08:52:22 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: chr20:20,000,704
INFO 2026-06-08 08:52:22 MarkDuplicates Tracking 131055 as yet unmatched pairs. 39046 records in RAM.
INFO 2026-06-08 08:52:24 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chr20:31,605,456
INFO 2026-06-08 08:52:24 MarkDuplicates Tracking 128906 as yet unmatched pairs. 36897 records in RAM.
INFO 2026-06-08 08:52:25 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 1s. Last read position: chr20:33,303,023
INFO 2026-06-08 08:52:25 MarkDuplicates Tracking 126703 as yet unmatched pairs. 34693 records in RAM.
INFO 2026-06-08 08:52:27 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: chr20:34,749,476
INFO 2026-06-08 08:52:27 MarkDuplicates Tracking 124712 as yet unmatched pairs. 32702 records in RAM.
INFO 2026-06-08 08:52:28 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 1s. Last read position: chr20:35,557,074
INFO 2026-06-08 08:52:28 MarkDuplicates Tracking 122571 as yet unmatched pairs. 30561 records in RAM.
INFO 2026-06-08 08:52:30 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 1s. Last read position: chr20:36,526,979
INFO 2026-06-08 08:52:30 MarkDuplicates Tracking 120180 as yet unmatched pairs. 28170 records in RAM.
INFO 2026-06-08 08:52:32 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 1s. Last read position: chr20:37,316,314
INFO 2026-06-08 08:52:32 MarkDuplicates Tracking 117805 as yet unmatched pairs. 25794 records in RAM.
INFO 2026-06-08 08:52:34 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:19:59s. Time for last 1,000,000: 2s. Last read position: chr20:41,404,612
INFO 2026-06-08 08:52:34 MarkDuplicates Tracking 115606 as yet unmatched pairs. 23595 records in RAM.
INFO 2026-06-08 08:52:36 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 2s. Last read position: chr20:44,489,336
INFO 2026-06-08 08:52:36 MarkDuplicates Tracking 113518 as yet unmatched pairs. 21507 records in RAM.
INFO 2026-06-08 08:52:38 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 1s. Last read position: chr20:45,943,156
INFO 2026-06-08 08:52:38 MarkDuplicates Tracking 111252 as yet unmatched pairs. 19240 records in RAM.
INFO 2026-06-08 08:52:39 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 1s. Last read position: chr20:48,651,556
INFO 2026-06-08 08:52:39 MarkDuplicates Tracking 109343 as yet unmatched pairs. 17331 records in RAM.
INFO 2026-06-08 08:52:41 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 1s. Last read position: chr20:50,893,217
INFO 2026-06-08 08:52:41 MarkDuplicates Tracking 107118 as yet unmatched pairs. 15097 records in RAM.
INFO 2026-06-08 08:52:42 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 1s. Last read position: chr20:57,652,353
INFO 2026-06-08 08:52:42 MarkDuplicates Tracking 105132 as yet unmatched pairs. 13111 records in RAM.
INFO 2026-06-08 08:52:44 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 1s. Last read position: chr20:58,895,660
INFO 2026-06-08 08:52:44 MarkDuplicates Tracking 106847 as yet unmatched pairs. 14826 records in RAM.
INFO 2026-06-08 08:52:45 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:20:11s. Time for last 1,000,000: 1s. Last read position: chr20:59,001,612
INFO 2026-06-08 08:52:45 MarkDuplicates Tracking 100122 as yet unmatched pairs. 8101 records in RAM.
INFO 2026-06-08 08:52:47 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: chr20:62,330,564
INFO 2026-06-08 08:52:47 MarkDuplicates Tracking 97970 as yet unmatched pairs. 5948 records in RAM.
INFO 2026-06-08 08:52:49 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:20:14s. Time for last 1,000,000: 1s. Last read position: chr20:63,493,051
INFO 2026-06-08 08:52:49 MarkDuplicates Tracking 95080 as yet unmatched pairs. 3057 records in RAM.
INFO 2026-06-08 08:52:50 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 1s. Last read position: chr20:63,964,634
INFO 2026-06-08 08:52:50 MarkDuplicates Tracking 92531 as yet unmatched pairs. 506 records in RAM.
INFO 2026-06-08 08:52:52 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 1s. Last read position: chr21:8,215,982
INFO 2026-06-08 08:52:52 MarkDuplicates Tracking 91089 as yet unmatched pairs. 21113 records in RAM.
INFO 2026-06-08 08:52:53 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 1s. Last read position: chr21:8,397,729
INFO 2026-06-08 08:52:53 MarkDuplicates Tracking 90253 as yet unmatched pairs. 20270 records in RAM.
INFO 2026-06-08 08:52:54 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 1s. Last read position: chr21:8,442,275
INFO 2026-06-08 08:52:54 MarkDuplicates Tracking 88842 as yet unmatched pairs. 18854 records in RAM.
INFO 2026-06-08 08:52:55 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 1s. Last read position: chr21:29,056,468
INFO 2026-06-08 08:52:55 MarkDuplicates Tracking 87167 as yet unmatched pairs. 17179 records in RAM.
INFO 2026-06-08 08:52:56 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 1s. Last read position: chr21:33,775,054
INFO 2026-06-08 08:52:56 MarkDuplicates Tracking 84989 as yet unmatched pairs. 15001 records in RAM.
INFO 2026-06-08 08:52:59 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 2s. Last read position: chr21:36,391,569
INFO 2026-06-08 08:52:59 MarkDuplicates Tracking 82468 as yet unmatched pairs. 12480 records in RAM.
INFO 2026-06-08 08:53:00 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 1s. Last read position: chr21:42,312,174
INFO 2026-06-08 08:53:00 MarkDuplicates Tracking 82521 as yet unmatched pairs. 12533 records in RAM.
INFO 2026-06-08 08:53:02 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 1s. Last read position: chr21:44,316,326
INFO 2026-06-08 08:53:02 MarkDuplicates Tracking 78899 as yet unmatched pairs. 8911 records in RAM.
INFO 2026-06-08 08:53:04 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 1s. Last read position: chr21:45,981,804
INFO 2026-06-08 08:53:04 MarkDuplicates Tracking 76714 as yet unmatched pairs. 6726 records in RAM.
INFO 2026-06-08 08:53:05 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 1s. Last read position: chr21:46,111,991
INFO 2026-06-08 08:53:05 MarkDuplicates Tracking 74283 as yet unmatched pairs. 4295 records in RAM.
INFO 2026-06-08 08:53:07 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 1s. Last read position: chr21:46,284,270
INFO 2026-06-08 08:53:07 MarkDuplicates Tracking 71473 as yet unmatched pairs. 1485 records in RAM.
INFO 2026-06-08 08:53:09 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 1s. Last read position: chr22:19,408,575
INFO 2026-06-08 08:53:09 MarkDuplicates Tracking 68950 as yet unmatched pairs. 26963 records in RAM.
INFO 2026-06-08 08:53:10 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 1s. Last read position: chr22:21,939,543
INFO 2026-06-08 08:53:10 MarkDuplicates Tracking 66849 as yet unmatched pairs. 24862 records in RAM.
INFO 2026-06-08 08:53:12 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 1s. Last read position: chr22:24,568,013
INFO 2026-06-08 08:53:12 MarkDuplicates Tracking 64519 as yet unmatched pairs. 22532 records in RAM.
INFO 2026-06-08 08:53:13 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 1s. Last read position: chr22:28,800,384
INFO 2026-06-08 08:53:13 MarkDuplicates Tracking 63473 as yet unmatched pairs. 21486 records in RAM.
INFO 2026-06-08 08:53:15 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 1s. Last read position: chr22:30,337,798
INFO 2026-06-08 08:53:15 MarkDuplicates Tracking 60327 as yet unmatched pairs. 18340 records in RAM.
INFO 2026-06-08 08:53:16 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 1s. Last read position: chr22:32,849,479
INFO 2026-06-08 08:53:16 MarkDuplicates Tracking 58206 as yet unmatched pairs. 16219 records in RAM.
INFO 2026-06-08 08:53:18 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 1s. Last read position: chr22:36,504,567
INFO 2026-06-08 08:53:18 MarkDuplicates Tracking 55667 as yet unmatched pairs. 13680 records in RAM.
INFO 2026-06-08 08:53:20 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 1s. Last read position: chr22:38,506,007
INFO 2026-06-08 08:53:20 MarkDuplicates Tracking 53637 as yet unmatched pairs. 11650 records in RAM.
INFO 2026-06-08 08:53:22 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:20:47s. Time for last 1,000,000: 2s. Last read position: chr22:40,844,842
INFO 2026-06-08 08:53:22 MarkDuplicates Tracking 51199 as yet unmatched pairs. 9212 records in RAM.
INFO 2026-06-08 08:53:23 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 1s. Last read position: chr22:42,602,023
INFO 2026-06-08 08:53:23 MarkDuplicates Tracking 49056 as yet unmatched pairs. 7069 records in RAM.
INFO 2026-06-08 08:53:25 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:20:50s. Time for last 1,000,000: 1s. Last read position: chr22:46,397,701
INFO 2026-06-08 08:53:25 MarkDuplicates Tracking 46612 as yet unmatched pairs. 4625 records in RAM.
INFO 2026-06-08 08:53:27 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 1s. Last read position: chr22:50,290,063
INFO 2026-06-08 08:53:27 MarkDuplicates Tracking 44351 as yet unmatched pairs. 2364 records in RAM.
INFO 2026-06-08 08:53:28 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 1s. Last read position: chrX:1,389,710
INFO 2026-06-08 08:53:28 MarkDuplicates Tracking 42787 as yet unmatched pairs. 35080 records in RAM.
INFO 2026-06-08 08:53:30 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:20:55s. Time for last 1,000,000: 1s. Last read position: chrX:10,117,456
INFO 2026-06-08 08:53:30 MarkDuplicates Tracking 39373 as yet unmatched pairs. 31665 records in RAM.
INFO 2026-06-08 08:53:32 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 1s. Last read position: chrX:23,837,066
INFO 2026-06-08 08:53:32 MarkDuplicates Tracking 37138 as yet unmatched pairs. 29418 records in RAM.
INFO 2026-06-08 08:53:33 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 1s. Last read position: chrX:41,342,621
INFO 2026-06-08 08:53:33 MarkDuplicates Tracking 35496 as yet unmatched pairs. 27775 records in RAM.
INFO 2026-06-08 08:53:35 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 1s. Last read position: chrX:47,586,542
INFO 2026-06-08 08:53:35 MarkDuplicates Tracking 33734 as yet unmatched pairs. 26013 records in RAM.
INFO 2026-06-08 08:53:36 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:21:01s. Time for last 1,000,000: 1s. Last read position: chrX:49,245,976
INFO 2026-06-08 08:53:36 MarkDuplicates Tracking 30912 as yet unmatched pairs. 23191 records in RAM.
INFO 2026-06-08 08:53:38 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:21:03s. Time for last 1,000,000: 1s. Last read position: chrX:53,534,545
INFO 2026-06-08 08:53:38 MarkDuplicates Tracking 28856 as yet unmatched pairs. 21134 records in RAM.
INFO 2026-06-08 08:53:39 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:21:05s. Time for last 1,000,000: 1s. Last read position: chrX:54,812,979
INFO 2026-06-08 08:53:39 MarkDuplicates Tracking 27785 as yet unmatched pairs. 20063 records in RAM.
INFO 2026-06-08 08:53:41 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:21:06s. Time for last 1,000,000: 1s. Last read position: chrX:71,136,501
INFO 2026-06-08 08:53:41 MarkDuplicates Tracking 24561 as yet unmatched pairs. 16839 records in RAM.
INFO 2026-06-08 08:53:42 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 1s. Last read position: chrX:76,173,117
INFO 2026-06-08 08:53:42 MarkDuplicates Tracking 22607 as yet unmatched pairs. 14884 records in RAM.
INFO 2026-06-08 08:53:44 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:21:09s. Time for last 1,000,000: 1s. Last read position: chrX:103,609,258
INFO 2026-06-08 08:53:44 MarkDuplicates Tracking 20880 as yet unmatched pairs. 13157 records in RAM.
INFO 2026-06-08 08:53:46 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:21:11s. Time for last 1,000,000: 1s. Last read position: chrX:123,514,533
INFO 2026-06-08 08:53:46 MarkDuplicates Tracking 18679 as yet unmatched pairs. 10956 records in RAM.
INFO 2026-06-08 08:53:47 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:21:12s. Time for last 1,000,000: 1s. Last read position: chrX:136,879,341
INFO 2026-06-08 08:53:47 MarkDuplicates Tracking 17109 as yet unmatched pairs. 9386 records in RAM.
INFO 2026-06-08 08:53:49 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:21:15s. Time for last 1,000,000: 2s. Last read position: chrX:153,767,570
INFO 2026-06-08 08:53:49 MarkDuplicates Tracking 14737 as yet unmatched pairs. 7012 records in RAM.
INFO 2026-06-08 08:53:51 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:21:16s. Time for last 1,000,000: 1s. Last read position: chrX:154,349,415
INFO 2026-06-08 08:53:51 MarkDuplicates Tracking 12547 as yet unmatched pairs. 4822 records in RAM.
INFO 2026-06-08 08:53:53 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:21:18s. Time for last 1,000,000: 1s. Last read position: chrX:154,442,544
INFO 2026-06-08 08:53:53 MarkDuplicates Tracking 10197 as yet unmatched pairs. 2472 records in RAM.
INFO 2026-06-08 08:53:54 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:21:19s. Time for last 1,000,000: 1s. Last read position: chrX:155,457,759
INFO 2026-06-08 08:53:54 MarkDuplicates Tracking 7799 as yet unmatched pairs. 74 records in RAM.
INFO 2026-06-08 08:53:55 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:21:21s. Time for last 1,000,000: 1s. Last read position: GL000220.1:116,805
INFO 2026-06-08 08:53:55 MarkDuplicates Tracking 5773 as yet unmatched pairs. 59 records in RAM.
INFO 2026-06-08 08:53:56 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:21:22s. Time for last 1,000,000: 0s. Last read position: KI270713.1:5,142
INFO 2026-06-08 08:53:56 MarkDuplicates Tracking 5633 as yet unmatched pairs. 30 records in RAM.
INFO 2026-06-08 08:53:57 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:21:23s. Time for last 1,000,000: 1s. Last read position: KI270733.1:175,399
INFO 2026-06-08 08:53:57 MarkDuplicates Tracking 139 as yet unmatched pairs. 118 records in RAM.
INFO 2026-06-08 08:53:58 MarkDuplicates Read 614794024 records. 0 pairs never matched.
INFO 2026-06-08 08:54:33 MarkDuplicates After buildSortedReadEndLists freeMemory: 204142048; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:54:33 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 08:54:37 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 08:54:37 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:55:03 OpticalDuplicateFinder Large duplicate set. size = 1582
INFO 2026-06-08 08:55:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,661
INFO 2026-06-08 08:55:51 OpticalDuplicateFinder Large duplicate set. size = 1464
INFO 2026-06-08 08:55:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,168
INFO 2026-06-08 08:55:51 OpticalDuplicateFinder Large duplicate set. size = 1268
INFO 2026-06-08 08:55:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,801
INFO 2026-06-08 08:55:51 OpticalDuplicateFinder Large duplicate set. size = 1432
INFO 2026-06-08 08:55:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,488
INFO 2026-06-08 08:55:51 OpticalDuplicateFinder Large duplicate set. size = 1293
INFO 2026-06-08 08:55:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,183
INFO 2026-06-08 08:55:52 OpticalDuplicateFinder Large duplicate set. size = 1019
INFO 2026-06-08 08:55:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,102
INFO 2026-06-08 08:55:52 OpticalDuplicateFinder Large duplicate set. size = 1526
INFO 2026-06-08 08:55:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,897
INFO 2026-06-08 08:55:52 OpticalDuplicateFinder Large duplicate set. size = 1070
INFO 2026-06-08 08:55:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,307
INFO 2026-06-08 08:55:52 OpticalDuplicateFinder Large duplicate set. size = 1199
INFO 2026-06-08 08:55:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,710
INFO 2026-06-08 08:55:52 OpticalDuplicateFinder Large duplicate set. size = 1237
INFO 2026-06-08 08:55:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,733
INFO 2026-06-08 08:55:52 OpticalDuplicateFinder Large duplicate set. size = 1304
INFO 2026-06-08 08:55:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,195
INFO 2026-06-08 08:55:52 OpticalDuplicateFinder Large duplicate set. size = 1247
INFO 2026-06-08 08:55:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,587
INFO 2026-06-08 08:55:53 OpticalDuplicateFinder Large duplicate set. size = 1148
INFO 2026-06-08 08:55:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,168
INFO 2026-06-08 08:55:53 OpticalDuplicateFinder Large duplicate set. size = 1339
INFO 2026-06-08 08:55:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,901
INFO 2026-06-08 08:55:53 OpticalDuplicateFinder Large duplicate set. size = 1937
INFO 2026-06-08 08:55:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,744
INFO 2026-06-08 08:55:53 OpticalDuplicateFinder Large duplicate set. size = 1238
INFO 2026-06-08 08:55:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,935
INFO 2026-06-08 08:55:53 OpticalDuplicateFinder Large duplicate set. size = 1042
INFO 2026-06-08 08:55:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,930
INFO 2026-06-08 08:55:53 OpticalDuplicateFinder Large duplicate set. size = 1486
INFO 2026-06-08 08:55:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,354
INFO 2026-06-08 08:55:53 OpticalDuplicateFinder Large duplicate set. size = 1411
INFO 2026-06-08 08:55:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,116
INFO 2026-06-08 08:55:53 OpticalDuplicateFinder Large duplicate set. size = 1050
INFO 2026-06-08 08:55:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,380
INFO 2026-06-08 08:55:53 OpticalDuplicateFinder Large duplicate set. size = 1670
INFO 2026-06-08 08:55:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,515
INFO 2026-06-08 08:55:53 OpticalDuplicateFinder Large duplicate set. size = 1915
INFO 2026-06-08 08:55:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,613
INFO 2026-06-08 08:55:53 OpticalDuplicateFinder Large duplicate set. size = 1145
INFO 2026-06-08 08:55:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,237
INFO 2026-06-08 08:55:53 OpticalDuplicateFinder Large duplicate set. size = 1328
INFO 2026-06-08 08:55:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,996
INFO 2026-06-08 08:55:53 OpticalDuplicateFinder Large duplicate set. size = 1189
INFO 2026-06-08 08:55:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,028
INFO 2026-06-08 08:55:53 OpticalDuplicateFinder Large duplicate set. size = 1312
INFO 2026-06-08 08:55:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,119
INFO 2026-06-08 08:55:54 OpticalDuplicateFinder Large duplicate set. size = 1410
INFO 2026-06-08 08:55:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,497
INFO 2026-06-08 08:56:12 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 08:56:12 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:57:10 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 08:57:17 MarkDuplicates After generateDuplicateIndexes freeMemory: 203950704; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:57:17 MarkDuplicates Marking 363232397 records as duplicates.
INFO 2026-06-08 08:57:17 MarkDuplicates Found 15716918 optical duplicate clusters.
INFO 2026-06-08 08:57:17 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 08:57:36 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:19s. Time for last 10,000,000: 19s. Last read position: chr1:21,864,166
INFO 2026-06-08 08:57:54 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:37s. Time for last 10,000,000: 17s. Last read position: chr1:43,604,910
INFO 2026-06-08 08:58:12 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:55s. Time for last 10,000,000: 17s. Last read position: chr1:119,967,499
INFO 2026-06-08 08:58:29 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:12s. Time for last 10,000,000: 16s. Last read position: chr1:155,660,145
INFO 2026-06-08 08:58:45 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:28s. Time for last 10,000,000: 16s. Last read position: chr1:207,886,992
INFO 2026-06-08 08:59:02 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:44s. Time for last 10,000,000: 16s. Last read position: chr2:27,664,100
INFO 2026-06-08 08:59:17 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:02:00s. Time for last 10,000,000: 15s. Last read position: chr2:73,902,381
INFO 2026-06-08 08:59:33 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:16s. Time for last 10,000,000: 15s. Last read position: chr2:181,916,070
INFO 2026-06-08 08:59:48 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:31s. Time for last 10,000,000: 15s. Last read position: chr2:237,352,522
INFO 2026-06-08 09:00:03 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:46s. Time for last 10,000,000: 15s. Last read position: chr3:49,123,584
INFO 2026-06-08 09:00:18 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:01s. Time for last 10,000,000: 15s. Last read position: chr3:170,178,791
INFO 2026-06-08 09:00:34 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:17s. Time for last 10,000,000: 15s. Last read position: chr4:84,774,896
INFO 2026-06-08 09:00:50 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:33s. Time for last 10,000,000: 15s. Last read position: chr5:54,518,798
INFO 2026-06-08 09:01:08 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:51s. Time for last 10,000,000: 18s. Last read position: chr5:168,712,282
INFO 2026-06-08 09:01:26 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:09s. Time for last 10,000,000: 17s. Last read position: chr6:17,771,146
INFO 2026-06-08 09:01:48 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:31s. Time for last 10,000,000: 22s. Last read position: chr6:32,028,973
INFO 2026-06-08 09:02:12 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:55s. Time for last 10,000,000: 24s. Last read position: chr6:44,255,202
INFO 2026-06-08 09:02:33 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:16s. Time for last 10,000,000: 21s. Last read position: chr6:158,095,840
INFO 2026-06-08 09:02:55 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:37s. Time for last 10,000,000: 21s. Last read position: chr7:44,539,514
INFO 2026-06-08 09:03:16 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:59s. Time for last 10,000,000: 21s. Last read position: chr7:98,238,515
INFO 2026-06-08 09:03:35 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:06:18s. Time for last 10,000,000: 19s. Last read position: chr7:139,600,426
INFO 2026-06-08 09:03:54 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:37s. Time for last 10,000,000: 19s. Last read position: chr8:56,074,380
INFO 2026-06-08 09:04:11 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:54s. Time for last 10,000,000: 17s. Last read position: chr8:127,738,762
INFO 2026-06-08 09:04:27 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:07:10s. Time for last 10,000,000: 15s. Last read position: chr8:143,862,334
INFO 2026-06-08 09:04:43 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:07:26s. Time for last 10,000,000: 15s. Last read position: chr8:144,312,139
INFO 2026-06-08 09:04:59 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:42s. Time for last 10,000,000: 16s. Last read position: chr9:92,258,715
INFO 2026-06-08 09:05:17 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:08:00s. Time for last 10,000,000: 17s. Last read position: chr9:132,509,396
INFO 2026-06-08 09:05:34 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:08:17s. Time for last 10,000,000: 16s. Last read position: chr10:70,145,390
INFO 2026-06-08 09:05:50 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:33s. Time for last 10,000,000: 16s. Last read position: chr10:116,921,514
INFO 2026-06-08 09:06:07 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:50s. Time for last 10,000,000: 16s. Last read position: chr11:17,330,949
INFO 2026-06-08 09:06:24 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:09:07s. Time for last 10,000,000: 17s. Last read position: chr11:62,690,327
INFO 2026-06-08 09:06:42 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:09:25s. Time for last 10,000,000: 17s. Last read position: chr11:70,486,050
INFO 2026-06-08 09:06:59 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:41s. Time for last 10,000,000: 16s. Last read position: chr11:123,097,888
INFO 2026-06-08 09:07:16 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:59s. Time for last 10,000,000: 17s. Last read position: chr12:47,785,390
INFO 2026-06-08 09:07:33 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:10:16s. Time for last 10,000,000: 16s. Last read position: chr12:56,714,625
INFO 2026-06-08 09:07:50 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:10:33s. Time for last 10,000,000: 16s. Last read position: chr12:115,966,188
INFO 2026-06-08 09:08:07 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:50s. Time for last 10,000,000: 17s. Last read position: chr13:97,434,628
INFO 2026-06-08 09:08:25 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:11:08s. Time for last 10,000,000: 17s. Last read position: chr14:68,912,178
INFO 2026-06-08 09:08:42 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:11:25s. Time for last 10,000,000: 17s. Last read position: chr15:28,142,838
INFO 2026-06-08 09:09:01 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:44s. Time for last 10,000,000: 19s. Last read position: chr15:84,197,303
INFO 2026-06-08 09:09:18 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:12:01s. Time for last 10,000,000: 16s. Last read position: chr16:3,289,736
INFO 2026-06-08 09:09:34 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:12:17s. Time for last 10,000,000: 16s. Last read position: chr16:21,834,776
INFO 2026-06-08 09:09:50 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:12:33s. Time for last 10,000,000: 16s. Last read position: chr16:30,225,689
INFO 2026-06-08 09:10:07 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:12:50s. Time for last 10,000,000: 16s. Last read position: chr16:71,448,758
INFO 2026-06-08 09:10:23 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:13:06s. Time for last 10,000,000: 16s. Last read position: chr17:4,969,230
INFO 2026-06-08 09:10:39 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:13:22s. Time for last 10,000,000: 16s. Last read position: chr17:39,726,861
INFO 2026-06-08 09:10:57 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:13:40s. Time for last 10,000,000: 17s. Last read position: chr17:50,189,393
INFO 2026-06-08 09:11:15 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:13:58s. Time for last 10,000,000: 18s. Last read position: chr17:50,199,555
INFO 2026-06-08 09:11:33 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:14:16s. Time for last 10,000,000: 17s. Last read position: chr17:82,054,507
INFO 2026-06-08 09:11:50 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:14:32s. Time for last 10,000,000: 16s. Last read position: chr19:1,370,960
INFO 2026-06-08 09:12:05 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:14:48s. Time for last 10,000,000: 15s. Last read position: chr19:11,193,495
INFO 2026-06-08 09:12:21 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:15:04s. Time for last 10,000,000: 15s. Last read position: chr19:34,431,925
INFO 2026-06-08 09:12:38 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:15:20s. Time for last 10,000,000: 16s. Last read position: chr19:42,289,862
INFO 2026-06-08 09:12:53 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:15:36s. Time for last 10,000,000: 15s. Last read position: chr19:49,514,277
INFO 2026-06-08 09:13:09 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:15:52s. Time for last 10,000,000: 15s. Last read position: chr19:58,417,622
INFO 2026-06-08 09:13:24 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:16:07s. Time for last 10,000,000: 15s. Last read position: chr20:37,316,314
INFO 2026-06-08 09:13:40 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:16:23s. Time for last 10,000,000: 15s. Last read position: chr20:63,493,051
INFO 2026-06-08 09:13:54 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:16:37s. Time for last 10,000,000: 14s. Last read position: chr21:45,981,804
INFO 2026-06-08 09:14:09 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:16:52s. Time for last 10,000,000: 15s. Last read position: chr22:38,506,007
INFO 2026-06-08 09:14:24 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:17:07s. Time for last 10,000,000: 14s. Last read position: chrX:49,245,976
INFO 2026-06-08 09:14:39 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:17:22s. Time for last 10,000,000: 14s. Last read position: chrX:154,442,544
INFO 2026-06-08 09:14:54 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:14:54 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:14:54 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:14:54 MarkDuplicates Before output close freeMemory: 203894560; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:14:54 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:14:54 MarkDuplicates After output close freeMemory: 104149512; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:14:54 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 42.36 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory