File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/1a8b2e55c1466f7131982dacc07cc9/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 10:01:16
                             Started mapping on |	Jun 08 10:07:38
                                    Finished on |	Jun 08 11:03:40
       Mapping speed, Million of reads per hour |	292.20

                          Number of input reads |	272885379
                      Average input read length |	248
                                    UNIQUE READS:
                   Uniquely mapped reads number |	262263987
                        Uniquely mapped reads % |	96.11%
                          Average mapped length |	247.66
                       Number of splices: Total |	268881807
            Number of splices: Annotated (sjdb) |	264397087
                       Number of splices: GT/AG |	265454877
                       Number of splices: GC/AG |	1966336
                       Number of splices: AT/AC |	246278
               Number of splices: Non-canonical |	1214316
                      Mismatch rate per base, % |	0.33%
                         Deletion rate per base |	0.03%
                        Deletion average length |	2.20
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.72
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	6884675
             % of reads mapped to multiple loci |	2.52%
        Number of reads mapped to too many loci |	475558
             % of reads mapped to too many loci |	0.17%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2418797
                 % of reads unmapped: too short |	0.89%
                Number of reads unmapped: other |	842362
                     % of reads unmapped: other |	0.31%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%