File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/f02c3f7a693b69ee8223f6ae39b982/.command.log
Size
1.1 KB
Task
NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (tih_rna_sample_00576_B23MVV7LT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/7a3cfd20c1c344604c0d200a233a0c/tih_rna_sample_00576_B23MVV7LT4_1.sample_qc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/f02c3f7a693b69ee8223f6ae39b982/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/f02c3f7a693b69ee8223f6ae39b982/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/c135177d58ced1fcc7f116731656be/tih_rna_sample_00576_B23MVV7LT4_1
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: tih_rna_sample_00576_B23MVV7LT4_1/abundance.h5
Successfully converted tih_rna_sample_00576_B23MVV7LT4_1/abundance.h5 to tih_rna_sample_00576_B23MVV7LT4_1_kallisto_mqc.tsv
  Sample: tih_rna_sample_00576_B23MVV7LT4_1
  Mean Fragment Length: 134.1 bp
  Median Fragment Length: 123.0 bp
  pct_mito_est_counts: 0.012%
  pct_ribo_est_counts: 0.623%
  pct_hk_est_counts: 0.333%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.026%
  pct_ribo_tpm: 1.937%
  pct_hk_tpm: 0.514%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 0.034%