Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/ba6cbd746ede3ed7b15d64725e0280/tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/77d22aa0eaf10db9a728ff3458416e/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/a58649d724a965fbd7ef7faab463ec/tih_rna_sample_00602_B23MVV7LT4_1.FusionInspector.fusions.tsv Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/arriba/cytobands_hg38_GRCh38_v2.4.0.tsv Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_annot.gtf Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/arriba/protein_domains_hg38_GRCh38_v2.4.0.gff3 Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/77d22aa0eaf10db9a728ff3458416e/.command.run Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/957ec5fa50300d91ef3e1172ba0204/tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam ==> STAGING COMPLETE (8 inputs) Loading annotation Read 3041209 records Warning in parseGtfAttribute("exon_number", exons) : Failed to parse 'exon_number' attribute of 8 record(s). Loading protein domains Read 134356 records Drawing fusion #1: DNM2:SMARCA4 [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #2: DNM2:SMARCA4 [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #3: DNM2:SMARCA4 [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #4: TVP23C:CDRT4 [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #5: TVP23C:CDRT4 [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #6: TVP23C:CDRT4 [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #7: TVP23C:CDRT4 [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #8: TVP23C:CDRT4 [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #9: STX16:NPEPL1 [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #10: STX16:NPEPL1 [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #11: TLK2:AC240565.1 [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #12: AC015911.9:SLFN12L [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #13: AC015911.9:SLFN12L [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #14: AC015911.9:SLFN12L [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #15: TLK2P1:AC110079.1 [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #16: TMED7:TICAM2 [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #17: TMED7:TICAM2 [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #18: TMED7:TICAM2 [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #19: TMED7:TICAM2 [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #20: TMED7:TICAM2 [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #21: KLRC4:KLRK1 [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #22: AP001347.1:ANKRD20A11P [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #23: AP001347.1:ANKRD20A11P [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #24: AP001347.1:ANKRD20A11P [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #25: AP001347.1:ANKRD20A11P [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #26: AP001347.1:ANKRD20A11P [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #27: AP001347.1:ANKRD20A11P [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #28: AP001347.1:ANKRD20A11P [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #29: EFL1:GOLGA6L11P [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Drawing fusion #30: UBA1:ZFX [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai [W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00602_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai Done