File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/0af986241eec627d28eb517d8e740d/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 09:53:08
                             Started mapping on |	Jun 08 09:59:32
                                    Finished on |	Jun 08 10:48:18
       Mapping speed, Million of reads per hour |	305.54

                          Number of input reads |	248332402
                      Average input read length |	256
                                    UNIQUE READS:
                   Uniquely mapped reads number |	235176243
                        Uniquely mapped reads % |	94.70%
                          Average mapped length |	256.19
                       Number of splices: Total |	251972247
            Number of splices: Annotated (sjdb) |	248187208
                       Number of splices: GT/AG |	249148296
                       Number of splices: GC/AG |	1684507
                       Number of splices: AT/AC |	183250
               Number of splices: Non-canonical |	956194
                      Mismatch rate per base, % |	0.23%
                         Deletion rate per base |	0.02%
                        Deletion average length |	1.81
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.70
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	9610730
             % of reads mapped to multiple loci |	3.87%
        Number of reads mapped to too many loci |	422353
             % of reads mapped to too many loci |	0.17%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2748037
                 % of reads unmapped: too short |	1.11%
                Number of reads unmapped: other |	375039
                     % of reads unmapped: other |	0.15%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%