Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/2befc6497f5e4010c50c22d9b84c3b/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/2befc6497f5e4010c50c22d9b84c3b/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/0e131d051e1c2aec66758007368190/tih_rna_sample_00592_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/0eaac37a0c5a44ae4c844ffe4e352c/tih_rna_sample_00592_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00592_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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