Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/e88fd7fc7045f143707b3a331bf8bc/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/679282a6bc79512170b683a3912a93/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/679282a6bc79512170b683a3912a93/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/0f71a0c154cf351fb20ae48f0bca50/tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/06c2d4721a1880f0c93d310501f4f9/tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 312034742
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00582_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	312034742
Known Splicing Events:	308738025
Partial Novel Splicing Events:	1881625
Novel Splicing Events:	1271209
Filtered Splicing Events:	143883

Total splicing  Junctions:	572821
Known Splicing Junctions:	280040
Partial Novel Splicing Junctions:	155241
Novel Splicing Junctions:	137540

===================================================================
Create BED file ...
Create Interact file ...