File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/778ae520539280eb669aea218af052/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 09:43:00
                             Started mapping on |	Jun 08 09:50:03
                                    Finished on |	Jun 08 10:41:25
       Mapping speed, Million of reads per hour |	260.16

                          Number of input reads |	222722746
                      Average input read length |	250
                                    UNIQUE READS:
                   Uniquely mapped reads number |	211997039
                        Uniquely mapped reads % |	95.18%
                          Average mapped length |	250.18
                       Number of splices: Total |	198745073
            Number of splices: Annotated (sjdb) |	194466589
                       Number of splices: GT/AG |	196263252
                       Number of splices: GC/AG |	1420864
                       Number of splices: AT/AC |	190337
               Number of splices: Non-canonical |	870620
                      Mismatch rate per base, % |	0.23%
                         Deletion rate per base |	0.02%
                        Deletion average length |	2.01
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.68
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	7421241
             % of reads mapped to multiple loci |	3.33%
        Number of reads mapped to too many loci |	336065
             % of reads mapped to too many loci |	0.15%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2009993
                 % of reads unmapped: too short |	0.90%
                Number of reads unmapped: other |	958408
                     % of reads unmapped: other |	0.43%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%