Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/ded029741321efd15cf761867438de/tih_rna_sample_00685_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/ca55ed3ffc255802f9ab32a428dbf6/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/ca55ed3ffc255802f9ab32a428dbf6/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/1213c1c91a3c503a4b93430f2d0a50/tih_rna_sample_00685_B23MVV7LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory